NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300011247

3300011247: Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_3, 0.02



Overview

Basic Information
IMG/M Taxon OID3300011247 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0121704 | Gp0173496 | Ga0151657
Sample NameMarine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_3, 0.02
Sequencing StatusPermanent Draft
Sequencing CenterToyama Prefectural University
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size55910521
Sequencing Scaffolds31
Novel Protein Genes34
Associated Families33

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available21
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium1
All Organisms → Viruses → Predicted Viral2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp.1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Tenericutes → Mollicutes → Acholeplasmatales → Acholeplasmataceae → unclassified Acholeplasmataceae → Acholeplasmataceae bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Staphylococcaceae → Staphylococcus → Staphylococcus haemolyticus1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Marinovum → unclassified Marinovum → Marinovum sp.1
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameEnvironmental Dna From Seawater And Marine Sediment
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine benthic biome → marine benthic feature → marine sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationJapan Sea near Toyama Prefecture, JAPAN
CoordinatesLat. (o)37.1316Long. (o)137.71844Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000502Metagenome / Metatranscriptome1073Y
F002281Metagenome / Metatranscriptome575Y
F004479Metagenome / Metatranscriptome436Y
F005415Metagenome401Y
F005580Metagenome396Y
F005817Metagenome / Metatranscriptome389N
F008944Metagenome / Metatranscriptome325Y
F010694Metagenome / Metatranscriptome300N
F010919Metagenome / Metatranscriptome297Y
F013702Metagenome / Metatranscriptome269Y
F014622Metagenome / Metatranscriptome261N
F015324Metagenome / Metatranscriptome255Y
F016813Metagenome / Metatranscriptome244Y
F018560Metagenome / Metatranscriptome234Y
F025412Metagenome202Y
F034978Metagenome173Y
F036268Metagenome170Y
F048410Metagenome / Metatranscriptome148Y
F049554Metagenome146Y
F051932Metagenome143Y
F056171Metagenome / Metatranscriptome138Y
F057768Metagenome136Y
F061021Metagenome132Y
F061521Metagenome / Metatranscriptome131Y
F064236Metagenome / Metatranscriptome129N
F065214Metagenome128N
F070648Metagenome123N
F071259Metagenome122Y
F071990Metagenome / Metatranscriptome121Y
F072323Metagenome / Metatranscriptome121N
F084115Metagenome112N
F084724Metagenome / Metatranscriptome112Y
F092857Metagenome / Metatranscriptome107Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0151657_1000896Not Available563Open in IMG/M
Ga0151657_1006524All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium1691Open in IMG/M
Ga0151657_1008179All Organisms → Viruses → Predicted Viral2280Open in IMG/M
Ga0151657_1008387Not Available1189Open in IMG/M
Ga0151657_1010919Not Available1503Open in IMG/M
Ga0151657_1014716Not Available604Open in IMG/M
Ga0151657_1015162Not Available630Open in IMG/M
Ga0151657_1016523All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp.679Open in IMG/M
Ga0151657_1016974All Organisms → Viruses → Predicted Viral1553Open in IMG/M
Ga0151657_1023997Not Available823Open in IMG/M
Ga0151657_1028235Not Available829Open in IMG/M
Ga0151657_1030816Not Available721Open in IMG/M
Ga0151657_1036952Not Available532Open in IMG/M
Ga0151657_1037591Not Available506Open in IMG/M
Ga0151657_1040879All Organisms → cellular organisms → Bacteria → Terrabacteria group → Tenericutes → Mollicutes → Acholeplasmatales → Acholeplasmataceae → unclassified Acholeplasmataceae → Acholeplasmataceae bacterium897Open in IMG/M
Ga0151657_1042424All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium549Open in IMG/M
Ga0151657_1045892All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Staphylococcaceae → Staphylococcus → Staphylococcus haemolyticus930Open in IMG/M
Ga0151657_1046674Not Available531Open in IMG/M
Ga0151657_1050889Not Available616Open in IMG/M
Ga0151657_1055754Not Available678Open in IMG/M
Ga0151657_1057103Not Available516Open in IMG/M
Ga0151657_1058077Not Available525Open in IMG/M
Ga0151657_1061041Not Available500Open in IMG/M
Ga0151657_1064105All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon696Open in IMG/M
Ga0151657_1069372Not Available574Open in IMG/M
Ga0151657_1073004Not Available541Open in IMG/M
Ga0151657_1074235All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Marinovum → unclassified Marinovum → Marinovum sp.774Open in IMG/M
Ga0151657_1076351All Organisms → Viruses → unclassified viruses → Circular genetic element sp.541Open in IMG/M
Ga0151657_1077751Not Available577Open in IMG/M
Ga0151657_1079080Not Available737Open in IMG/M
Ga0151657_1091388Not Available576Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0151657_1000896Ga0151657_10008962F065214MSKRSNIIIKNGRTEILLYRHCDGYLTGAGQDLHDDLSNSDFDNVGQYFNIAKFTEKLLSQNSSYRIDNQLGGDIEYLYTFEFEDGYEHGDHYNRVKLKSIEVDQEHEYGR
Ga0151657_1006524Ga0151657_10065243F071259VKHKQARIVFGVAISAAAIAVAVDHSKQRLPDPDKQLASQQAVIIIDEGEELPAENSGDCSKPTSSDRQASPCSL*
Ga0151657_1008179Ga0151657_10081794F072323MVTSLTIALAISLTGQVDDKVCYKKCTSHNDDVIHLDVKYNSNLNTVKDYVNANYDEDVYEWVCQGEDEGFKHTITNKLTCDGTNHEEWEKYGNKGECYVCY*
Ga0151657_1008387Ga0151657_10083871F071990MAEPTTRFRLIPQSTAVAAVDTAAERLAAIASESIVSTGDGNEADFGTIDISGGAANSSVLTILWDITADGGNTLAETFKLWLSDNGFDQAGSVLKVQPLSGGDNGAPSLTENYAANAGTGDYTFANMVEAEPGAINIWPTDEGTSMALSTASDDVVMWAMYCAIAAGERS
Ga0151657_1010919Ga0151657_10109192F061021MATYERLDYGSPDGCQVGDSAAKVSVYGAVPVVQRPYSSAVHATAGLATSASFGATQLAAMQEIQFTLIGLGVWATA*
Ga0151657_1014716Ga0151657_10147161F005415TLSDCQDQLREWASELAQREIERRPEGMKLKQLKDLKTKALDVVMESGTPDTLAIALNEVTKKIGLTWNTDVQALPNFKQAS*
Ga0151657_1015162Ga0151657_10151622F014622MIASAVYGFVAAILVLVITFMIIMLTSRFEKAGYGIMYGSLFIKMVTLCGFTLAVKPHLSDAIIYAAIILISIMFSNVYLIIKIKK*
Ga0151657_1016523Ga0151657_10165231F084115MKKFKFHYNTIGDCFYDIYCQPNCTKKEDLLKDMAGILNGELTADDVAKEIIQWVGERSDEGYLDDDCQISTSREVKEGSVSVPIAKQGRS*
Ga0151657_1016974Ga0151657_10169743F084115MKKFKFHYNTIGDCFYDIYCQPNCTKKEDLLKDMAGILNGELTPEEFKKEILQRVGERSEECYLDEDCQIRRFDEVKRGSVSVPIAKQGSS*
Ga0151657_1023997Ga0151657_10239972F000502MSEMIARLLMVLTGFVLAMLGIITFVHSGDHKMLGILISFAGVVSIFGGLPDNA*
Ga0151657_1028235Ga0151657_10282351F061521MSEAMIKIEIERIVNLVTGFGWKKVEEKTLTGKVQITLEKVIPVTQG*
Ga0151657_1030816Ga0151657_10308161F051932DITEQNCETITKLRWLQVKELAIKYSNDQEFGSEVRKLIKK*
Ga0151657_1034210Ga0151657_10342102F015324MAIVKQVQKKVVMSRKDIIKFQLLTHCYINKITVSNSDLECLALLGVTGPMEFTHFFYDVF*
Ga0151657_1036952Ga0151657_10369522F084724MKLTEYEENLILVSLEQMEEHQFIIYEAGDITEDTYNLRMEEVRTARTKIKQQ*
Ga0151657_1037591Ga0151657_10375913F048410MVTIKSKDGYNVDVTGIYLKALEKTITPQEYKSQLNTITRTNKNT*
Ga0151657_1040879Ga0151657_10408792F004479SGDKVFLQGNKVIKEAGHYPEKFKQQMDFLMCCDHPNFIDVKPLSETSYEMKRYSTWYDKILSQPMNTSLGQLESLISIIGKFDNIGSYVKTQDYFDKLQLRTGYTYEGKFDAVSAWGFVHGDLTVSNILHDKDFLFIDPRGTEEQNYYDYGKLMQSFVMEYESHIYNNPNEKYSKFCKEAEKVMYEWCDEYQLKFFLAVHLLGAVPFFELNERYELAGSFLKKGHELFDELEIKYTK*
Ga0151657_1042424Ga0151657_10424241F049554VAKLPHARSEIQPSNVKAVATYGIDAYGEDLFLPFTDVGLTETALTFSTAVVTRDLEDSNQPMDDFPAVYSVTDAGVLLNEGDDTQFSQTYSFVPDMTAIIYAIHLVFPAVVTCSAFTSGTLNCGALHI
Ga0151657_1042424Ga0151657_10424242F064236SASTGGGGLMQYNMPRGKGIPLANNVTITNYYTNRDARTGASNFINFVRYSKN*
Ga0151657_1045892Ga0151657_10458922F056171MRKFTHKAIIAITYATVIGMTTLALSGIGFLIFGLITGQLNADFGIYK*
Ga0151657_1046674Ga0151657_10466741F002281TRRSSDLTKRGDLMKIKHKIVAEHLGVKLRGNETFDELLKIEQQVKEHKERQERIDEEKANIQRVDAQTRGVKKW*
Ga0151657_1050889Ga0151657_10508892F036268MKGINMKNKCEDCEGKGYYTDVISTGLSDPNDPYHEPHIERCDKCKVFGDDVKAKEYHDKIK*
Ga0151657_1055754Ga0151657_10557542F010919KTDMKDTVNLPLDEFQKLYAIKLRLETYFSYMEDNRGVLKAIAPTFLDDAKSYIEEYNELTNEKV*
Ga0151657_1057103Ga0151657_10571031F010694MSIPVIFDNPHVFFEEATKQNYTDAHDLFYRSMVEYLLDESIQYICTFIYNDYDKYNFEPLSDEDEQILSRDALLYFEFIEEYETCQLIFDLLYSED*
Ga0151657_1058077Ga0151657_10580771F008944MKKFNGMESHLIIEALDCYVTHVEEDILELEKDGKRSIFAPGFYTNISNDLKYKVKSMTKKEKYLITD*
Ga0151657_1061041Ga0151657_10610412F034978MDIDINATKDQIEEFKSSILWSDITKELEIWKEGFNDEMMSIVDETADNNSSTASVLLHIGDLNGRQKAVDYMLSILDVFLSILETKETKETEEEFDG*
Ga0151657_1064105Ga0151657_10641052F005817MRSNLLSRLKPEFKKGLEDNKIRYPDMTNNIEFLLTQLFYYDDLTVRQVLNIFVFSDMEYLDRDSFNWRYGEDVFEIENNVA*
Ga0151657_1069372Ga0151657_10693722F092857MLADKFLQEELNKFAKYDIQKSRNKLSKTEKNDNKTLQNSLVYDIELTTK*
Ga0151657_1073004Ga0151657_10730041F016813MINLTKLPVLNENSEYLIDNSDYSELFERLNYNTEDYLIVYSYNSDFLEVIQELIQYNIEFSHHSCHLSDESYLLININK*
Ga0151657_1074235Ga0151657_10742351F070648LKSFIDEAANKGVTLSEDVAKNMVNEVWANAKLPIGVMMNEGTKSGVVRLGSVPNFFLKSEAADLLSKKGDFVKTSGGKNLSDLTGVGEQVIKKLLGKAENPMSTIVEGTNALSIQVRLNQYLDDLVKQSNVLKKNWDAWDSGGRVGPEPRVPFLVDNPGEAKKYFGANAKN
Ga0151657_1076351Ga0151657_10763511F005580SNMKKSIPHPSITGMASGLAIAAYLNAGKPTTTATGTSLGNVTVMTDGVIKDITDGQLGAAFNTLSGNAINMIASDAGRKTLVTAGGIAALGAFARRQFPQLKLGGSKLYFRI*
Ga0151657_1076351Ga0151657_10763512F057768MATTITRTIDATPTDKAYFSLTDNMLSSSLGNIQVPQGSSRISRVDCAFDTTNAKGYQVVCRLLG
Ga0151657_1077751Ga0151657_10777511F018560LHDALPI*KDYYLLIVKDISLGEFEKSELRHIIETIDNAI*
Ga0151657_1079080Ga0151657_10790801F013702IINDMEIVEREACYLIDTIEHALERIVNYNDLTDDEMKSIKDMAIIMLQEWS*
Ga0151657_1091388Ga0151657_10913881F025412MNYRELKWGALKSYATKLGINTKGMTKVELLECLAAMTEEAHEVEELKPFKGIKQEHPLFNEVEPYLPYLKAYKKLNAISREPKVNEAIATLFLKYIEQDKNIRLNLGCGICKQRYYQRMIAGYNRLVEEYGGERI*
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