NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300011196

3300011196: Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 17 - S13.2.60.2.a - transect 2, repeat 2, age 113 years, surface depth)



Overview

Basic Information
IMG/M Taxon OID3300011196 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0121480 | Gp0155991 | Ga0137482
Sample NameArctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 17 - S13.2.60.2.a - transect 2, repeat 2, age 113 years, surface depth)
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Bristol
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size16687388
Sequencing Scaffolds22
Novel Protein Genes23
Associated Families23

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes5
All Organisms → cellular organisms → Bacteria9
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Intrasporangium → Intrasporangium calvum1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus → Phycicoccus sp.1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae1
Not Available2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMetagenomes Of Arctic Soils
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → glacial feature → soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationMidre Lovenbreen, Svalbard, Norway
CoordinatesLat. (o)78.99166667Long. (o)12.23Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001675Metagenome / Metatranscriptome654Y
F010995Metagenome296Y
F014266Metagenome264Y
F014312Metagenome / Metatranscriptome264Y
F014740Metagenome260Y
F015256Metagenome256Y
F024393Metagenome / Metatranscriptome206Y
F030046Metagenome186Y
F038916Metagenome165Y
F040574Metagenome / Metatranscriptome161Y
F045796Metagenome / Metatranscriptome152Y
F049665Metagenome146Y
F051096Metagenome144Y
F057767Metagenome / Metatranscriptome136Y
F059290Metagenome / Metatranscriptome134N
F063781Metagenome / Metatranscriptome129Y
F064034Metagenome / Metatranscriptome129Y
F064587Metagenome128Y
F065818Metagenome / Metatranscriptome127N
F073412Metagenome120Y
F074624Metagenome119Y
F089339Metagenome109Y
F091838Metagenome / Metatranscriptome107Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0137482_100030All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes19302Open in IMG/M
Ga0137482_100031All Organisms → cellular organisms → Bacteria19049Open in IMG/M
Ga0137482_100035All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes18305Open in IMG/M
Ga0137482_100053All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Intrasporangium → Intrasporangium calvum16894Open in IMG/M
Ga0137482_100056All Organisms → cellular organisms → Bacteria16681Open in IMG/M
Ga0137482_100058All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes16602Open in IMG/M
Ga0137482_100089All Organisms → cellular organisms → Bacteria14495Open in IMG/M
Ga0137482_100122All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes12862Open in IMG/M
Ga0137482_100181All Organisms → cellular organisms → Bacteria10623Open in IMG/M
Ga0137482_100221All Organisms → cellular organisms → Bacteria9540Open in IMG/M
Ga0137482_100334All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria8007Open in IMG/M
Ga0137482_100343All Organisms → cellular organisms → Bacteria7949Open in IMG/M
Ga0137482_100603All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus → Phycicoccus sp.5674Open in IMG/M
Ga0137482_100677All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes5248Open in IMG/M
Ga0137482_100751All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas4855Open in IMG/M
Ga0137482_100908All Organisms → cellular organisms → Bacteria4107Open in IMG/M
Ga0137482_100951All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia3936Open in IMG/M
Ga0137482_101081All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae3506Open in IMG/M
Ga0137482_101144All Organisms → cellular organisms → Bacteria3325Open in IMG/M
Ga0137482_101208All Organisms → cellular organisms → Bacteria3159Open in IMG/M
Ga0137482_101686Not Available2022Open in IMG/M
Ga0137482_101879Not Available1700Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0137482_100030Ga0137482_1000302F073412METLNQLETQPIPIEEEEKRHTRRLLVGILCAVLLTGLVFGGYIFLRKRHERQLAAAAEVEIKKKVTKVEVSVDDPVVNGKTTVLSGTIHNISSEPLHNLGVELQLRRRVGSGVDLHAVTPEATDLAPGASTRYSLEIQTQDYLTATFLRVVGGSDRASIASKVQPGNPRPPMDSPESKTVVVDKPRTDRKDEFLNTPNNPGRVP*
Ga0137482_100031Ga0137482_1000315F064034MKEISIKIDDDLYRRASQKVSNLEAEVNQRVTEYLESVNGDADDVVATRARMAELFASTTNFGVGVRSSREEMHDR*
Ga0137482_100035Ga0137482_10003513F030046MDSETVAEIFTIVVVLFLIALIVSPVLAIWIYVFYQNRKRKRIRQRMLATRSDLIGNKNWFPARYASQPRFDALFKFFPWDGAGVFVVAPGSALFVGETLSGAPVTLQFAPGNARINWLGKCPWPNGMVSWIRFDTAAEKHYFSSETGVMIFGSHDTTKAIYDEANRNFGAPAAQNL*
Ga0137482_100053Ga0137482_10005310F010995MTIVQVAEEPMPSRRGTDVANEAQYHVVILYEHALLGEGIAKYLRAQAGVEATVASAYDAGAVISALALDPAVVIYELNDPLQQMGLAALAPNAVLIDVSTVITRGLGGAPCLAGLDQILQAVGDCGTVARPA*
Ga0137482_100056Ga0137482_1000565F065818MPEKGQQAKVYDIPEADLAKFEAVEGTKATYDEAKEKIAGGKELGMGVDLDKADVQAYSDICICYFWWRGVLYYRYQYCWQDCP*
Ga0137482_100056Ga0137482_1000566F091838MALVTTIAKKGEQSKVYDVPEAELAKYEAAEANQTSYEEGKDKLAEGEELAGLEFDKGDVQAYGNICICWIRMGHRWYYRYQYCWQSCP*
Ga0137482_100058Ga0137482_1000589F049665MSVRLKAIYKDGAFVPITNGDKLNVPENSEVELTVHNPYIIPPKAKSEEERQRALRELFASWDAHPLRADAPRLTRDEMHERR*
Ga0137482_100089Ga0137482_10008911F059290MNINGLRIYTNLLNAEVRNGLGVFYSRRDNGPFYRWSYEEKRWLAARVSSSNFSPKTLNPTSWKVVPAALQRSIVEHYQE*
Ga0137482_100122Ga0137482_10012210F040574MSFLARFRRPKEDPEVARRALLLQQGRIGDATVLSVEPDSEGIVMLAYTYTIGGVDYEAFQRLDAQQLLREYDYLPGARVPLRYDPRRPVNSFVV*
Ga0137482_100181Ga0137482_1001818F015256MKRNIFIGMVGLVLLFGSAASSAAQVKRVQMHIAGYLCGN*
Ga0137482_100221Ga0137482_1002211F014740MSNSFFNLLKPSRSIGLIGEKMRKLILVSLSLLLFCCAAPTQLQAQQPTPTPGPLTFFYDYSVFPGKELEVNTLINTVGGPVRDKLMAEGVVMAWGVETPILRYPGGTTHLIWFTVANWAGVEKVLNAMEARLAKVAADEALAAR
Ga0137482_100334Ga0137482_1003345F045796MTLSYSNLQQLAVSLIGAIVASSLFISAAVGPVPIV*
Ga0137482_100343Ga0137482_1003435F024393MMPVNESSATALVRFTGLGIICFNKERQRGEIGAIRDNKHELTIKIQKPVFQDGIDNDIIVYQDVATYEKLPKTDVQIEIKAAGKPAIEGYETYQSGDFDRLASADVNDFRWIVNMNALHGETALSPTANGKHPLAKIYIGNGLFYVHKLDRNLFFERVEKDAEGTAMQRETFGNVAETIGVKIEGDEVNFTIRIGGREETHSLRRIDGLPYRIEIKNIDPDGDAIVSDMPDYYQYLSSSTGNQFDLMPIVEDEGNDTATQPAVDFKVFCHPIGSDDLSSIDDL*
Ga0137482_100603Ga0137482_1006033F057767MNHPAVLAVAGRLDADQQKVADLVQRTTMAVSTLGQNWFGKDSTQFASDWAAHSKQLHLAADGIAAMAKQARTQASDQQATSTA*
Ga0137482_100677Ga0137482_1006773F089339MGRSPEDLTGKWADLSERRLLQYQGKLTGLYGHDGDQAAYDFLPRDKQEALALLADRLASLDLWQYVDRIVNVYGQGGVGMYFSESSGLEPVLDTRRDFTRKFARHRDNSGGFIEKHRKRASLHFLYIDPKEGEREWHVHLDLYGPMGSMFSAALHLYYERWKKFRPDWRIMKLWG*
Ga0137482_100751Ga0137482_1007513F063781MDVSVEIHCESCGSANYSLPEGAGEDAPILCNDCGADQGSVAELRAALAARALEQSAESLRRDLERLRGNDP*
Ga0137482_100908Ga0137482_1009085F014266MNFQQVENVLIRFRGETVHIKTMSGGIYEGAITDVTNDFVTLKVHGAAGEIDQVMVLLHSIESILPRSRT*
Ga0137482_100951Ga0137482_1009511F074624KTSMTNEQFERKMEFIVETLAQVAVNDQRHDARLDRLERIAKLMVRAGRRERRFRREQNARFDEQFGKVNIALAELAEAQKRTEASIAHTDSKLDALVDIIRKQQNGGS*
Ga0137482_101081Ga0137482_1010814F051096MTYHPTPRSTTAGTTCEDTVTQACVHIDAAARQLQAAADGDVFSPLLALAGQLALIRGGIDPSIRAAVDPNDCLGAIAHLDRALSLLDAVPPSAGPTDLLVWTLRLADARDSLLAARAGQP*
Ga0137482_101144Ga0137482_1011443F001675MWDTKRQIIWLVAGISFGTFIVFMDAHDEAGNFDKTVFVFWEIVLLAIIVTLFYIYSRKKT*
Ga0137482_101208Ga0137482_1012082F014312MKNKTDRSLTREFVFGIRLNVTKVTAIETDEGTANGVVRLWERAKAERFAIAMTPLVEAERLARKIERFSGRPDKNG*
Ga0137482_101686Ga0137482_1016861F064587IPLVKKGELVGSISVFDIITYLAECYPKATMNLPPLSAQVMDTVDGG*
Ga0137482_101879Ga0137482_1018791F038916LKDAAPADPRRCIHQTIVVAAPTTAPTETMNHISINPSDARDVLDYHNPDGDFEGGDFKRNLITAIICAGPEDRARLALGFPSLVAAIRSQTFNPAGIEYLEGIARSYERPSGQGR*
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