NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300010223

3300010223: Freshwater aquifer microbial community from Bangor, North Wales, UK, before enrichment, replicate 3



Overview

Basic Information
IMG/M Taxon OID3300010223 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0121426 | Gp0154206 | Ga0136270
Sample NameFreshwater aquifer microbial community from Bangor, North Wales, UK, before enrichment, replicate 3
Sequencing StatusPermanent Draft
Sequencing CenterFidelity Systems Inc
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size81600217
Sequencing Scaffolds8
Novel Protein Genes9
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage6

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameFreshwater Microbial Communities Enriched With Nitrile Substrates
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Microbial Communities Enriched With Nitrile Substrates

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater lake biome → aquifer → fresh water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationBangor, North Wales, UK
CoordinatesLat. (o)53.23Long. (o)-4.13Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031713Metagenome182Y
F038776Metagenome / Metatranscriptome165Y
F040370Metagenome162Y
F042051Metagenome / Metatranscriptome159Y
F042607Metagenome158Y
F094045Metagenome106Y
F094469Metagenome106Y
F096147Metagenome105Y
F103138Metagenome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0136270_1000223All Organisms → cellular organisms → Bacteria23862Open in IMG/M
Ga0136270_1001194All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage5298Open in IMG/M
Ga0136270_1001975All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage3699Open in IMG/M
Ga0136270_1002446All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage3235Open in IMG/M
Ga0136270_1003291All Organisms → cellular organisms → Bacteria2608Open in IMG/M
Ga0136270_1003705All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2398Open in IMG/M
Ga0136270_1003863All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2324Open in IMG/M
Ga0136270_1015146All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage825Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0136270_1000223Ga0136270_10002235F094045MKYASIFFTILFIWLAIIIMAFSSPSTKEVFQLYLTVMLSTIVLFLIGFARK*
Ga0136270_1001194Ga0136270_10011941F038776YSSLENTICKKAYRLEDVKDSIERVAFDVVRFKDDDNGANLWQIQSSDDGDYIVSIYEPDPEEKVASENWKVSINKISGDLQVSYKGDPLVRVAYSKLGIPRAELNKAEQYLPQKLADNKKLVTALLNELNESAKKEVLSKYPELV*
Ga0136270_1001194Ga0136270_10011945F094469MNKNALKKILEHPDKDEIISKLVIGISSKDIHDWLKAKYTNVSEAKFVIAEKSIKSFQSNYLDIYNMINDDLAKSKSALVASTEEQLALSVQNNPTYKSKMLELAGKELDIRQIVTNLCVAIESRLAQVFDEIQEDPRNINTRVDRLLIDYAEVLGNILEKYYKFTEVPVNQTVEHKVTLQVVDQHISVFHDVIRKVLSQMDLETSLYFMEVFNEEFSKLKLPTEKDGPNTEVRLAEAKLLSETINKKINE*
Ga0136270_1001975Ga0136270_10019754F040370MGSNNFFKSDLYDIHSIIQASMIVYPKEIILATLRDYFSKDSYYHFSKDQWGFPNTTDHTNLPPGADLPITSYGSSAALGDLLSTRLFIGENYRHDGIYYPAILVKNGGSKYVPISINREKGAVQYEDVVFEDGYGNKTIIHSPAYFVTAGAWEGQIIIDVMSRSLRARDDLAQLIGMCFAEITVDSLYDVGIIVKPPSIGAPSETDDRNDKLFRQSITLDIRTEWRREIPIGNIIDAIFFTATFEDLSNPTAPVSPNITINTELNVLDMLLNS*
Ga0136270_1002446Ga0136270_10024465F096147ISAYLKMDAENLKKEFVPKYIANGEQKFYRFLILYAVNKLMAIKNGKYKGVSPELEFMKYYDCFIILYRREGDSTYXXXXDLARLFRKAAHKIYRVMLKEDMTPRNAKFLNLV*
Ga0136270_1003291Ga0136270_10032913F103138MQGTILLNYNENVKQIEEEEKLSFLRNLLEQMGVPIDDFWTIGTVLSIEQRMKLRTILATYGIQVIDDLDGHMQVYVERELVGEWFKSTYKLKRDLRELDPRKQLYMEMTINFWTIFEEQEQ*
Ga0136270_1003705Ga0136270_10037056F042607MPLRVIDNKRVDLTYAEDQMYQKIVASYTSLTNKGEDLFIDLFETDENGIIIFLKPPSKRQTSFEVFLFLMAVMQQQHIRLMYKQVDELCTEVREKIKDK*
Ga0136270_1003863Ga0136270_10038632F042051MTNTFGEVSWNDDVYAGSEKKNSKDLFLRLDEGSNEMRLVTQPFQYLVHKYKKEGDPGFGQKVSCSAVHGSCPLCAIGDKAKPRWLLGVISRKTGKXXXXVFSQIRKYARNTARWGDPTKYDIDIVVDKNGGATGYYAVQPIPKEPLSASDQVIKDSVDFEDLKRRVTPPTPEMVQKRIDKINGVTGETAEAAPEPKAGKAKSAAKSAPAPVSMTDEEDEAFPAYDGDQKNA*
Ga0136270_1015146Ga0136270_10151461F031713KARKDVDGQTFYVGKLKCPVMIDASEGVVFLVFVSDKGDEQLQIAPMDKKEDD*
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