Sample 3300009941

3300009941: Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 7, 12m depth; RNA IDBA-UD

Overview

Basic Information
IMG/M Taxon OID	3300009941 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0116874 \| Gp0151168 \| Ga0132240
Sample Name	Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 7, 12m depth; RNA IDBA-UD
Sequencing Status	Permanent Draft
Sequencing Center	Marine Biological Laboratory
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	162357808
Sequencing Scaffolds	37
Novel Protein Genes	39
Associated Families	39

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → Viruses → Predicted Viral	4
Not Available	15
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2
All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	2
All Organisms → Viruses	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium S5133MH16	1
All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → unclassified Spirochaetales → Spirochaetales bacterium	1
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Pond → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater biome → meromictic pond → pond water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Falmouth, Massachusetts
Coordinates	Lat. (^o)	41.548517	Long. (^o)	-70.622961	Alt. (m)	N/A	Depth (m)	12
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F001640	Metagenome / Metatranscriptome	659	Y
F001806	Metagenome / Metatranscriptome	631	Y
F001881	Metagenome / Metatranscriptome	622	Y
F003687	Metagenome / Metatranscriptome	473	Y
F007919	Metagenome / Metatranscriptome	342	Y
F015997	Metagenome / Metatranscriptome	250	N
F020907	Metagenome / Metatranscriptome	221	Y
F021098	Metagenome / Metatranscriptome	220	N
F021732	Metagenome / Metatranscriptome	217	Y
F023595	Metagenome / Metatranscriptome	209	Y
F024291	Metagenome / Metatranscriptome	206	Y
F030930	Metagenome / Metatranscriptome	184	N
F034112	Metagenome / Metatranscriptome	175	N
F037632	Metagenome / Metatranscriptome	167	Y
F039399	Metagenome / Metatranscriptome	164	N
F041648	Metagenome / Metatranscriptome	159	Y
F042640	Metagenome / Metatranscriptome	158	N
F046981	Metagenome / Metatranscriptome	150	Y
F047392	Metagenome / Metatranscriptome	150	Y
F049303	Metagenome / Metatranscriptome	147	Y
F049620	Metagenome / Metatranscriptome	146	N
F058177	Metagenome / Metatranscriptome	135	Y
F060411	Metagenome / Metatranscriptome	133	N
F060609	Metagenome / Metatranscriptome	132	Y
F060862	Metagenome / Metatranscriptome	132	Y
F063622	Metagenome / Metatranscriptome	129	Y
F072364	Metagenome / Metatranscriptome	121	N
F074578	Metagenome / Metatranscriptome	119	Y
F077299	Metagenome / Metatranscriptome	117	N
F083923	Metagenome / Metatranscriptome	112	N
F084270	Metagenome / Metatranscriptome	112	N
F088317	Metagenome / Metatranscriptome	109	Y
F088916	Metagenome / Metatranscriptome	109	Y
F089995	Metagenome / Metatranscriptome	108	Y
F090088	Metagenome / Metatranscriptome	108	N
F091790	Metagenome / Metatranscriptome	107	Y
F098267	Metagenome / Metatranscriptome	104	N
F101141	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0132240_1004931	All Organisms → cellular organisms → Bacteria	1779	Open in IMG/M
Ga0132240_1005037	All Organisms → Viruses → Predicted Viral	1761	Open in IMG/M
Ga0132240_1005798	All Organisms → Viruses → Predicted Viral	1648	Open in IMG/M
Ga0132240_1006080	All Organisms → Viruses → Predicted Viral	1612	Open in IMG/M
Ga0132240_1007730	Not Available	1433	Open in IMG/M
Ga0132240_1008603	Not Available	1364	Open in IMG/M
Ga0132240_1009744	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1285	Open in IMG/M
Ga0132240_1010028	All Organisms → Viruses → Predicted Viral	1268	Open in IMG/M
Ga0132240_1022272	Not Available	866	Open in IMG/M
Ga0132240_1022495	All Organisms → cellular organisms → Bacteria	862	Open in IMG/M
Ga0132240_1023809	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	842	Open in IMG/M
Ga0132240_1024582	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	831	Open in IMG/M
Ga0132240_1025718	Not Available	814	Open in IMG/M
Ga0132240_1026184	All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl	808	Open in IMG/M
Ga0132240_1026321	All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl	806	Open in IMG/M
Ga0132240_1026576	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	803	Open in IMG/M
Ga0132240_1027303	Not Available	793	Open in IMG/M
Ga0132240_1027578	All Organisms → Viruses	789	Open in IMG/M
Ga0132240_1028286	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01	780	Open in IMG/M
Ga0132240_1041326	Not Available	663	Open in IMG/M
Ga0132240_1043556	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	649	Open in IMG/M
Ga0132240_1051805	All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl	603	Open in IMG/M
Ga0132240_1053356	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	596	Open in IMG/M
Ga0132240_1055164	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium S5133MH16	589	Open in IMG/M
Ga0132240_1055295	Not Available	588	Open in IMG/M
Ga0132240_1058523	Not Available	575	Open in IMG/M
Ga0132240_1058530	Not Available	575	Open in IMG/M
Ga0132240_1059464	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → unclassified Spirochaetales → Spirochaetales bacterium	572	Open in IMG/M
Ga0132240_1060984	Not Available	566	Open in IMG/M
Ga0132240_1066749	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	546	Open in IMG/M
Ga0132240_1068405	Not Available	540	Open in IMG/M
Ga0132240_1070381	Not Available	534	Open in IMG/M
Ga0132240_1078097	Not Available	513	Open in IMG/M
Ga0132240_1078152	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01	513	Open in IMG/M
Ga0132240_1078343	Not Available	512	Open in IMG/M
Ga0132240_1079883	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	508	Open in IMG/M
Ga0132240_1082794	Not Available	501	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0132240_1004931	Ga0132240_10049312	F060609	MKKEKIRESLRPTTDSLTRREFCDKAIKRSSITAAVGVAGYLAYNKPAVRSFFGAGDAYAASTGPGRFSLKGDSN*
Ga0132240_1005037	Ga0132240_10050371	F042640	SPRDLVHHTYLQCINALESNQNIIDNLPGYFHTSMWNQAQNLFRKLYEIHETPTDTLVSDYDISEAIKREEAMIMANHLPWFDRTVLSLYLDGWSMAQISRESGINVSVLYESISKSKNKLRHVISKRTEEK*
Ga0132240_1005798	Ga0132240_10057982	F037632	MTKIIVEFSGWAECDSDKVLFQYIGNDDGRCPVITGTEWLKLSQDEQDDYILEDCVHAQETAIDGSLEVLDVIVEDEDGSEVTASRTYS*
Ga0132240_1006080	Ga0132240_10060801	F000325	QTMKVADGNAKLGSGCIVVSRPVGDTCPSTCVYLDKDCYALQTERQYKNAREAGFANVITEIAKIRSMLIDAIKRGKSIRFHERGDWFLDGKLDEDYVNNVCVACESVINSGYTLPDMWFYTHIYDSRLPSKLGKYMAVYASVHNDDDMQSAKAAGFTLFAWCDSDMKIAPKRPKRKGPKRDAWHKALPKLVVLSGETFVTCPEIRKGRDFVTCTGNKDSRACKMCITGKKNVLFPNH*
Ga0132240_1007730	Ga0132240_10077302	F049620	MTPEERDEKIVGILTKICINVLVKNLFDKNGVRVYEEVLHELNQLPVNEEEYTRCNHAHAFLHKTAIEYLQKTIVFNEERKNK*
Ga0132240_1007730	Ga0132240_10077303	F077299	MHTIGKILNAYLIYRRKIIAAHDNEVAALRHNANMEEKARKTREELYANFPTMLKEFKGKDFSTVPLYWYDMCIQFNMIEYQEGEKRALWEEAQALALEEPPESMDLMTIRSHAKKIEQGNTRRAVVIAQQLAVWRKVLKR*
Ga0132240_1008603	Ga0132240_10086031	F034112	EQYIYFVKFLLPQHPKAELEAIQYMNERDAVYEKIKPYARKLKVGTKDENQATVVRQLVRILDTQEVKDNVRRFLPALISQWETNDDELGIRLQIMDEVWEAKERYPYMAKVVNYFTNIPLDACYGKVAESVELKYLTFLYTKIVNAVNTPTETTYKQLYDFNGKVYTLPEKLMEKSTLLEFTMAAQYDKAVKQIQGGEAEGLLNVMAVLLKPLNEEYSDELFEQNKVDFLQMPLQTSFEVAFFLTKLSEKYTLDLQTSMLHQAMENLN*
Ga0132240_1009744	Ga0132240_10097442	F049303	MLSDPVRVLAVIAAVAVLVVPYLPAIGKRIAKLWRSLPSAPVPPANGIGVDDLTYVLGLANRLRLDGNEQATDLAKQLLDAMLEVPKK*
Ga0132240_1010028	Ga0132240_10100282	F063622	MKLHERLTEWYYIHNAVQSGDVIVNEIVNVVKDWLKTHHREETKYDADYNAGWMDCIETLEKDAR*
Ga0132240_1022272	Ga0132240_10222722	F021732	MITKYTVKCTLDKKLGHFVHVIFSSGFGLYGANKPHHEDDNIEIHGWTFEPHDIDLELYPRITRFNLMPLVDEHEIDWVILNNQSL*
Ga0132240_1022495	Ga0132240_10224951	F088916	EREKQKMPSTILNNIKGSDLPRIWANKINIIPDKTYTVIIQPQEERKSLDKIMSEISRNAKARSMTPDILEDILCEKIKHTL*
Ga0132240_1023809	Ga0132240_10238091	F047392	SRVAAQEPGGSGQPSSRIGLVHAHDAVKYAGYVLYFVEGKLAGHDQLTQTWSIVPREEAEFEHAFKIETHAIHSDADDAKPSFNMRNSWKEAYEDSVRYELFHQDEDRGLVLDAIQGPDGKPQEIDHETEHYIFPGSLKIGTKWLSEPVTSSLPGTCELEVIGSEVYNGTNCWVVSSTRQPKKDPLMKNSETMRKTARFLFDPLTLSVLRIDAVTEGVGPLGRDFKFVYHMEVAE*
Ga0132240_1024582	Ga0132240_10245821	F101141	MIEKPKKERRFLKAIGRVGEILIQEVLIKIGSNLIKKIGGKKNLPSILFLLASLSLFAQFPNTGNKQRLGFQTTGDGLVWRGSESDTVSIQPINNQNAWVILDTVNLKFYSFDFTSNVWNQLPSGTTI
Ga0132240_1024582	Ga0132240_10245822	F015997	SPHIQDAEYRWIVPAIGVSFYDTLIADKGSSTAFSSTAYQDLWNSQLKSFCANAVLYEASPYIVMQMGSNGLYTLDNEYGQNVGVEGLKFYQDTLLQRLDVKKKRIKDYLCSCAAGLTGFVSSAIGCPESTCDEHEEITDIYNTLGIVL*
Ga0132240_1025718	Ga0132240_10257181	F039399	YVKHKANTPWPNFAAAWYVWWRLLFKRKARITITVGADISNASTGSNVWLKACGWKSGWETKTNNETLIAYRIVGPCVEFCRYERRGEKLSFEDEKKFARGLSFWKWRRSAKPTIEDQRARGIGRLTSVTYEIKKPKGSAMRWPAIPWSEGGGKIPTASFCYFLEIE*
Ga0132240_1026184	Ga0132240_10261842	F003687	MSPSSVEHLLTQKARLLARRESPVIDQELESMRQAALEIFYQWQDGLVQFQDLVPFVAILEKKVDLNRSLLKWEQQHITD*
Ga0132240_1026321	Ga0132240_10263211	F060862	RTPRSVMSVFNTASTNGFQQEGLLLPTREELGARAFDTIRFWMEDGHSQLLSREQSLQIAAWALKSAGCKELQHHVLAELVELPENYG*
Ga0132240_1026576	Ga0132240_10265761	F007919	MTEKVKFTQVSRVICPKTGIHYLDAIDEYGNHWTAQQETGVERWITYKQLWTQDPQQPWDL*
Ga0132240_1027303	Ga0132240_10273031	F021098	LFNGFLEYLHYSEIIGTWSAILPGLVFAILRFGSGLGGIKMIQNQEAPRGVFFVFVSIGLTAWATSHASEISESIAINQDQLANAKWFVITALWVALLGELMIAAYMQSVQEKINKDLKMATIRKRPALKTTHKTNQTGTTSNLNAIGFKTNSQQLVADLQRAKNNLAAYESKVRNGIGNPIKMQQGAERWKEKVALIEQALSN*
Ga0132240_1027578	Ga0132240_10275783	F089995	DTLSPQYLQAMHLVAKMKASADKHGVGFVGGFVSPDGKKFMMTNMNEEDTQFLLPDDLK*
Ga0132240_1028286	Ga0132240_10282863	F001881	MTERAQEFMNAVWEHRNNGANTEEKLVAAILFTAAENIRSYTAQNDLIVLGRNDMIQLAEELNA*
Ga0132240_1041326	Ga0132240_10413262	F090088	MDKEALGRRVFMEFYTTFILDEEIEDTGRVFYLAQKASIIHLKLIRGVLQSDEYIINMAFLNDVINKIKI*
Ga0132240_1043556	Ga0132240_10435561	F088317	FRRTIVLSISLEEELMPGPEDNVKYPEIQKFTQEELCKDAPKTRRDLWYGNSYTPTLPPLDESQLVRWIKSGGKEEEVAGRYVMMPPPELPFRKLPVSTKFISCNTRHLKEIGAFRTMLPELFGDAGYKAVDDAYASFAYSEFKTAQKRGQLLNAPNCTAREIGTFIATVYDIQNFPIVIAEASDERVRIQLYKGLPIYCPYDVRRGDYRLCAATA
Ga0132240_1051805	Ga0132240_10518051	F001806	MDAGVRQKRVEALEKIKEHALGRAKEGADSFEVRDFVTSAKKELAYSLPDEEAFKKAVRATQANKGSKAN*
Ga0132240_1053356	Ga0132240_10533561	F046981	MALGIEQIEDFVAGIHQKFAGEERLAAQDISLPLQEYKYASRLFSGNLKKDTMSTSQCKWKVKVDTNDNFQVVGLYHRDSSTRVNVLGEGELKWGLTTNNYHYDIDEEIFRTGGRQVYDYIESLESDLLTSFYTGMEDLMFGPGPSSATQSPFPPVSLLWWITDTDDSVTEGN
Ga0132240_1055164	Ga0132240_10551642	F023595	MVDFGSERGLSVFETTGIAGYFEDFKKAKTKCWAKRCHL
Ga0132240_1055295	Ga0132240_10552952	F024291	MAQSSQGLTFTFGGSGVTVTNVNVSDTQDLVDATHLGIAPNARRVYVGGFTSDREVSVDYISGTILTAGVSGVLAISGPMSFSGNATIASASLGGSVGDFVRG
Ga0132240_1058523	Ga0132240_10585231	F060411	KEKVMVIFNIGNKAIRYEYPETAADITLEQYIFFVKFLLPQHPKAELEAIQYMNDRDAVYEKIKPYARKLKVGTKDENQATVVRQLDRILETQEVKDNVRRFLPSLISTWTAFDNGLRQNLKIMDEVWEAKERYPYMAKVVNYFTNIPLDACYGKVAESVELKYLTFLYTKIVNAVNTPTETTYKQLYDFN
Ga0132240_1058530	Ga0132240_10585301	F041648	MENIVSTFTNNSLTRYYEERIKYLEREKERLTNEARADFKITLDFWIYAQRMVNTYVMLHKESNHEFYADLITGVLKMYEAHDDIALDTSINRLRIENITHCKESIVKCQQITEAR*
Ga0132240_1059464	Ga0132240_10594641	F084270	MPRQTGQTNTVFPDGFRLEISTDGTTGSTWEEVGVLAGGATATLTWDDYYLDAGNYEGLVDKAKNPVFAVAPSAVWNWDAAVIAALFPGLFSTSAATTPAVGDDVEYAGTSNQVTLTRSKIRLTHYTVDASGGSETDGDIDWQFTLHNAKIDSGASFNFKGVNEDGLDEFTVSFT
Ga0132240_1060984	Ga0132240_10609841	F074578	DATQDLWSLMAAATNKLVLHGWEISSDAVAATLLEVTLLRLSAVGSEGAAATAVKLDTDDGTITGSARVGDTTPGTPGDILAGFQWEQLGPLGIIYTPEMRPVIEVSTGIALVCSTADAFEMSGWICWEEL*
Ga0132240_1066749	Ga0132240_10667491	F001640	MTTFSDSTVTGNKQILGDSLTAIKALVTDAERQSNTIAIHAKPLILKGKAVKRINYYNSLHLQISGRPVYTSTALRDTTAFLGTWNLNFDGEIILGEIQLNNNNRFIFNPDNGKVYSISTNLLLSTFTNQVSFAFNGVRYDLYKFANGKFATVDGEVRLIKKE*
Ga0132240_1068405	Ga0132240_10684051	F091790	MGLFKEYCSKSHAVEAHYIQSELASMNLAPEVYSRVCRVRMPEGKLSDYGFYTEEAEPLEQCDCDYYCYCSMKTERARLALCETVEYWTGWEFVDFHEGNFGYIERDGLKLLAIIGDL
Ga0132240_1070381	Ga0132240_10703811	F098267	MTNDRINQEYTEDQLFILNDIADEQRTAMEEGWDEDGAQEYLSDIAVKLMMEDHDWHE*
Ga0132240_1078097	Ga0132240_10780972	F083923	AILLMRNGQHINNDYITGINPTSGTITLTFAPDQGDDITLIWFVEEFVTPSNSAAVSMFQEEFTADGLTPTFTVTENEGKLPDSLSAIMVYRNGQFISNQFISSHDSVSGTITFGFVPRSGEKITIIWVVSNL*
Ga0132240_1078152	Ga0132240_10781523	F020907	MTNDEQLLNSLQGTMATIDPYSVKKEAIDEYRIDTVEERLTRIEDKVDLLITQLKIEFYKKNDGTSR*
Ga0132240_1078343	Ga0132240_10783431	F030930	MYATLILTVVHEVPSGDLVTNRYCVGFSLDDPRFQGFDIDRWAEPEMRSILMRSLIDEWAEGALGITGCEEISGSVQWQQRAITP*
Ga0132240_1079883	Ga0132240_10798831	F058177	MAKDIQDVTPVTEQPVGAPMGTPPGAQAVDSTQTVEQNAYVPTYKIKPEFKQAVLSCIGDRPFNEIAGLIQAINVETMDHTTLTQVINAMGQFPFQRVEKFMASINTYVEQVIED*
Ga0132240_1082794	Ga0132240_10827941	F072364	DLGFADGISGNSIKMFLDGVPVLALQNFNWKIKKGKKPLFGAGFKTAHGVTRSAHKIYEIDFEIKEILINSAINVVQTAKNAVFLSIFEDFTDIRNAVIIIMYPGAAAVRSKTFTGVEITDQEGGFSDSEDAEPIGIKCSGFATGATGVF*

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300009941: Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 7, 12m depth; RNA IDBA-UD

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences