NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008799

3300008799: Planktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany - sample NO3-1



Overview

Basic Information
IMG/M Taxon OID3300008799 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0117972 | Gp0126355 | Ga0103766
Sample NamePlanktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany - sample NO3-1
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Duisburg-Essen
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size103118441
Sequencing Scaffolds11
Novel Protein Genes16
Associated Families13

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar1
Not Available2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium monilatum1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Monogononta → Pseudotrocha → Ploima → Brachionidae → Brachionus3
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Siphonostomatoida → Caligidae → Lepeophtheirus → Lepeophtheirus salmonis1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Endopterygota → Coleoptera → Polyphaga → Cucujiformia → Tenebrionoidea → Tenebrionidae → Tenebrionidae incertae sedis → Tribolium → Tribolium castaneum1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NamePlanktonic Communities From Eutrophic Pond At The Campus Essen Of The University Duisburg-essen, Germany
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Eutrophic Pond → Planktonic Communities From Eutrophic Pond At The Campus Essen Of The University Duisburg-essen, Germany

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater biome → eutrophic pond → planktonic material
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUniversity Duisburg-Essen, Germany
CoordinatesLat. (o)51.46Long. (o)7.0Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000007Metagenome / Metatranscriptome8691Y
F000081Metatranscriptome2481Y
F000241Metagenome / Metatranscriptome1481Y
F000606Metagenome / Metatranscriptome993Y
F004094Metagenome / Metatranscriptome453Y
F004781Metagenome / Metatranscriptome423Y
F014507Metagenome / Metatranscriptome262Y
F027191Metagenome / Metatranscriptome195Y
F030134Metagenome / Metatranscriptome186Y
F040635Metagenome / Metatranscriptome161Y
F041786Metagenome / Metatranscriptome159Y
F061886Metagenome / Metatranscriptome131Y
F080070Metagenome / Metatranscriptome115Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0103766_1005487All Organisms → cellular organisms → Eukaryota → Sar1095Open in IMG/M
Ga0103766_1006088Not Available1041Open in IMG/M
Ga0103766_1008041All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium monilatum909Open in IMG/M
Ga0103766_1012503Not Available725Open in IMG/M
Ga0103766_1013802All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Monogononta → Pseudotrocha → Ploima → Brachionidae → Brachionus689Open in IMG/M
Ga0103766_1014420All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Siphonostomatoida → Caligidae → Lepeophtheirus → Lepeophtheirus salmonis674Open in IMG/M
Ga0103766_1020136All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Monogononta → Pseudotrocha → Ploima → Brachionidae → Brachionus569Open in IMG/M
Ga0103766_1020263All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Endopterygota → Coleoptera → Polyphaga → Cucujiformia → Tenebrionoidea → Tenebrionidae → Tenebrionidae incertae sedis → Tribolium → Tribolium castaneum567Open in IMG/M
Ga0103766_1020579All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae562Open in IMG/M
Ga0103766_1024448All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Monogononta → Pseudotrocha → Ploima → Brachionidae → Brachionus515Open in IMG/M
Ga0103766_1025207All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae507Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0103766_1005487Ga0103766_10054871F040635VRHEDIPEINNPKIRFPVLEGDKLMKEVLNGGYNVHPVPPPNSEIIERIKKRYETKRI
Ga0103766_1006088Ga0103766_10060881F030134KKDKIQPVLQRFKLRSCTFLIVEQTNYICDYNTYEKIIQHRGSSYIYR*
Ga0103766_1008041Ga0103766_10080411F004781HIRTFDNMRSDYYSPGEYWIVKSAAVWIQGRYLPLPSTSGLGVTKVIVVGGPFLKGHKLFVETRTATWDGQPVLQGFPSDFTVPGIVDMHYNGIGEVMQNGREGKALHIVHIRLEDGSPEGLQIQVNRWMEASEGDYINVKITMHKQPNQDGHCGNFNGIPADDDRIQVRARVGKTGVDPSVLLFDYKTPVVQANRPNINDCPADQLEAAKATCKEREHKFIPSMACLIDVCFGGKGFAAEG*
Ga0103766_1012503Ga0103766_10125031F000606FKFQNLLKKMKAALALIFFACVAGSMATDARNPMIEALVQQGQGIAQSVLGQLQQQILGFVQQTVGQLTSLFGSAGRFDFNAIIEQFKPLVNQLINQALGSVAGSLQGLIGGRAGIDLGAIFSEFLAGVTKPLTEIGQHFLNQGLSAVLGSLAGSRGIADLFAGLQQQIGTAVGAAQGALSGALSNLAALGSNLLDASKPHWEQLQEQLVGHGLNALGSLSETINNLHGSITGGR*
Ga0103766_1013802Ga0103766_10138021F061886MKEMHFLATTEAPASDNLDRGRFRDHYTNDYVWIEKNHVNDVGVRYDGLSRKVDHKPSHWRCEDEIERGKEYKRMNDECADKIADNRYSIANSREWLVDQGGISDRVHLMSAKTLKTRYDLDSIKRNMDNLKAMRARLLKS*
Ga0103766_1014420Ga0103766_10144201F004094VRADVLGHAEGAELLGTEDLGHLLVGDEELLVLRVLKVVLLDVGPQLLDAFSSGCFLLADNISEVSRELHGLGESGSLRHGEGFLVTEIYGEEKTVKV*
Ga0103766_1015173Ga0103766_10151731F000241MQSAARRPVLSLLLAGGALCALSSGLSFVGAWAPRAERGLVAARVSAGYLERLGPKDTDVPFQPTAGTGPGAEVEFKKRPFGILRYQPGQGGKGAMVMEVIPKSRYPGDPQGQAFLAGVKGGWVVKSVNGQDVLKEPFGKVMDLLDDEVADPRFSKSTAVALQEQGGRLAEPAALPAKVTFATIPGYVYK
Ga0103766_1015315Ga0103766_10153151F000241MTRRTLLPVVFAGAAVTYVFSTTMSFVGSFRPAHCRGDLVPARVSAEYLERCGPKDSDVPFQFSAVTGPGADVTFKKRPFGILRYQPGQGGKGAMAMEIIPTSRYPGDPQGQAFSSGVKSGWVVKSINGVDVLNEDFGKIMDLLDDEVADPRFSKSTALALEKQGGRLAPAADTPLSISFASIPGYVYKGKELRQDGQDGFH*
Ga0103766_1019414Ga0103766_10194141F000241FDSSAATGPGADVTFKKRPFGILRYQPGNGGKGAMAMEIIPTSRYPGDPQGQAMVAGVKSGWVLKSINGVNVLTESFGKIMDMLDDEVADPRFSKSTALALEKQGGRLAPAADTPLSISYASIPGYVYQGKELKQDGQDGFAR*
Ga0103766_1020136Ga0103766_10201361F080070VYLQFIQIGTQLLFAGQQVWAQVTPVLSQLKDDLINHTGDAVTIVAQTIATLNQIIGAGKRDANQKDLISTIVSSLGLDQVWSTITSLGSAVYLQFIQIGTQLLFAGQQVWAQVTPVLSQLKDDLINHTGDAVTIVAQTIASLNQIIG*
Ga0103766_1020263Ga0103766_10202631F041786FRHSLMTFGDKFTAQECDDAFAEFKIEDGMIDAVHLKSLMVAKKEGEES*
Ga0103766_1020579Ga0103766_10205791F014507AMFPDYWWTCTLCFGVPFAYIAIQNIYIDHDVMHGATFPPYEWQNYITHPFADFISLPWQEFVLEHNRHHASTVDLLQQGEFGWDPEEFHYALQQWSDKWYCLMLTVPWVPVIHFLGLNDTGALFAMEWWCHFPDEGAGGKCNKEFWTKWVPRRIKHNAFVLSLWACIWLLGTWPLGRPLSEGWRF
Ga0103766_1023056Ga0103766_10230561F000007MHKYYYSFSVDAPEDDLAKEMTHDLSMNFNKIAPFGKEDTARELQDHAAKTQDTLVDAVENAEVAEIKRAVFRALTRLRAATIKEFDTIARLETQAIDAYNDAHHYRAENPLAHLHEDEAPVETDKLKSFH*
Ga0103766_1024161Ga0103766_10241611F000081LELGLTGVRQALTALRNYYGSSSAGKDFSSSFMQQPANIRWGKSTGAGKSIIDILEVVESDFAKNLAKEEMEEADAVSEYEKMTQENSIVRTTKEQDVKYKTQEAASLDKTITELTSDRTTTDAELSAVLEYYAKIKERCIAKPETYEQRSARRAAEIEGLKQALATLSEET
Ga0103766_1024448Ga0103766_10244481F080070KDKKIDFTNKKFNKMKSFIIVLAICVASTLGAHLNAREVAQKDLISTIVSSLGLDQVWSTITSLGSAVYLQFINIGTQLLFAGQQVWAQVTPVLSQLKDDLINHTGDAVTIVAQTIATLNQIIGAGKRDANQKDLISTIVSSLGLDQVWATITSLGSAVYLQFIQIGTQLL
Ga0103766_1025207Ga0103766_10252072F027191VKDEREKRLLFKRHKAVRFLISPKKKKVKIEVNKIMNPAFLLGTAFNIAYWHRKYHSGTICKGVSNPQTSKALSGCEKEEIPK*
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