| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300008689 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0117987 | Gp0126537 | Ga0103948 |
| Sample Name | Planktonic microbial communities from coastal waters of California, USA - Canon-58 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | University of Hawaii |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 1420820 |
| Sequencing Scaffolds | 7 |
| Novel Protein Genes | 7 |
| Associated Families | 7 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Sar | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas paralcaligenes | 1 |
| Not Available | 3 |
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Planktonic Microbial Communities From Coastal Waters Of California, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Coastal → Unclassified → Coastal Water → Planktonic Microbial Communities From Coastal Waters Of California, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → coastal water body → coastal sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | N/A | Long. (o) | N/A | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001926 | Metagenome / Metatranscriptome | 616 | Y |
| F003081 | Metagenome / Metatranscriptome | 508 | Y |
| F003868 | Metagenome / Metatranscriptome | 464 | Y |
| F010914 | Metagenome / Metatranscriptome | 297 | Y |
| F013645 | Metagenome / Metatranscriptome | 269 | Y |
| F091607 | Metagenome / Metatranscriptome | 107 | N |
| F097458 | Metagenome / Metatranscriptome | 104 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0103948_10395 | All Organisms → cellular organisms → Eukaryota → Sar | 767 | Open in IMG/M |
| Ga0103948_10537 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas paralcaligenes | 692 | Open in IMG/M |
| Ga0103948_10699 | All Organisms → cellular organisms → Eukaryota → Sar | 633 | Open in IMG/M |
| Ga0103948_10753 | Not Available | 620 | Open in IMG/M |
| Ga0103948_11385 | Not Available | 504 | Open in IMG/M |
| Ga0103948_11400 | Not Available | 502 | Open in IMG/M |
| Ga0103948_11414 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea | 500 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0103948_10395 | Ga0103948_103952 | F001926 | VRHEDIPDINNPKTMKAVLEGDKLMKEVLNGGYNVHPVPPPNSETKERSARKYERKRTKIEKLFTLGYTTSGDP* |
| Ga0103948_10537 | Ga0103948_105372 | F091607 | LLLLGSKEQHSKVECSPVEPVNLCQTEQQTFLPEVAKSDEYTREQLQSLCLEATKRNAANRDIIKAIMLSNFEARKTSDLADNQINLCYSMIAQATKDTTNHDRTR* |
| Ga0103948_10699 | Ga0103948_106992 | F013645 | MNPAFLLGTAFNIAYWHRKYHSGTICKGVSNAQASNALSGCESEEIPK* |
| Ga0103948_10753 | Ga0103948_107531 | F097458 | PPIYLSLAFAALLPRRGIYALADTPKIYF*HIMPIDSRYELLGSPILIDNPYNLLEFYL* |
| Ga0103948_11385 | Ga0103948_113852 | F010914 | MIYNILVEQNGKFVATGETVECEFEETQAVIDELRLERGCCCALEAVSE* |
| Ga0103948_11400 | Ga0103948_114001 | F003868 | TSGKEVSSDGTSVNSETEKALFATAGYFIEKDLAFLPGPFGRLSVGYDNIVHDLDLGEQSNYREASLRDAGNARSERNHTVEAEVTGFDTLYATLNITDWLYLKAGSVTVDVTTKFTGTETSSYPTSHSLDGSVVGFGVEKSSDNGMFFRLEYNDYSIDGKTVANA |
| Ga0103948_11414 | Ga0103948_114141 | F003081 | MVIELREEMFNDTRYGAEVYYMHVRGVDSLMILSYVHMIKKNFLKN* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |