NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008572

3300008572: Microbial communities of Cyanobacterial mats from a recreation lake in Champs-sur-Marne, France - CSM2012-AB-F-N



Overview

Basic Information
IMG/M Taxon OID3300008572 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0117973 | Gp0126364 | Ga0103775
Sample NameMicrobial communities of Cyanobacterial mats from a recreation lake in Champs-sur-Marne, France - CSM2012-AB-F-N
Sequencing StatusPermanent Draft
Sequencing CenterCentre National de la Recherche Scientifique (CNRS)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size24190424
Sequencing Scaffolds12
Novel Protein Genes14
Associated Families14

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available6
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetes incertae sedis → ac1 cluster → Actinobacteria bacterium BACL2 MAG-120820-bin501
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMicrobial Communities Of Cyanobacterial Mats From A Recreation Lake In Champs-sur-marne, France
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Microbial Communities Of Cyanobacterial Mats From A Recreation Lake In Champs-sur-marne, France

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater lake biome → freshwater lake → microbial mat material
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Surface (non-saline)

Location Information
LocationChamps-sur-Marne, France
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000191Metagenome / Metatranscriptome1666Y
F015952Metagenome / Metatranscriptome251Y
F038004Metagenome / Metatranscriptome167Y
F042867Metagenome / Metatranscriptome157Y
F046876Metagenome / Metatranscriptome150Y
F057131Metagenome / Metatranscriptome136Y
F058094Metagenome / Metatranscriptome135Y
F060948Metagenome / Metatranscriptome132Y
F076150Metagenome / Metatranscriptome118Y
F082580Metagenome / Metatranscriptome113N
F082584Metagenome / Metatranscriptome113Y
F085203Metagenome / Metatranscriptome111Y
F087193Metagenome / Metatranscriptome110Y
F105025Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0103775_100311Not Available2086Open in IMG/M
Ga0103775_100794Not Available1399Open in IMG/M
Ga0103775_101021Not Available1244Open in IMG/M
Ga0103775_102013All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage907Open in IMG/M
Ga0103775_102813All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage762Open in IMG/M
Ga0103775_103802All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes656Open in IMG/M
Ga0103775_104196Not Available625Open in IMG/M
Ga0103775_104343All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes614Open in IMG/M
Ga0103775_104487All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetes incertae sedis → ac1 cluster → Actinobacteria bacterium BACL2 MAG-120820-bin50605Open in IMG/M
Ga0103775_104847All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata581Open in IMG/M
Ga0103775_105170Not Available563Open in IMG/M
Ga0103775_105547Not Available544Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0103775_100127Ga0103775_1001271F000191SGYTVGDLVNQHVRFIEPGGKRPLMTYEKALNRPSQGQEIPDFD*
Ga0103775_100311Ga0103775_1003111F082584MAIQLLRSTVSGRVPTSAQVAQGALAINLADRRLFSKDHNNEVFRIARPRDPSDYQLLHHVDGNNAYLGRLAWSDYPATGSPEDSTAWVIYRISTNSAGDVVSEQSATGAWSNKTSLNFS
Ga0103775_100794Ga0103775_1007941F105025MDHHQATASFTGLVATATGLTVSLLPEIEAWLRIASLLIGCAVGLASFAVIVRNWTKN
Ga0103775_101021Ga0103775_1010212F058094MSQIAFDPLTGNMISTTAQVAQLDSSGQVSSSMIPDDFDDVQRFDSVADFPPEGVVARIYFPADTNIPHRWDPPTLSYIPIVSDSDGGEF*
Ga0103775_102013Ga0103775_1020131F057131DLFQQKLERLEAEVKKMGYHIHRNEQAIAYAKVEELLGSISDIQTLLNTEHQD*
Ga0103775_102813Ga0103775_1028131F046876QNKNTPWDSSGSVTTVNWNKYNVFQFYDPNIHTLFRAVKDMTLDACKHYGLDFNKEQFMVQGWFNVNYNHIGKLDWHEHGGEGAPHFHGYYCVKAEPSVTHYRVFENEIENHNKNNRAILSETGHPHAMGDWDWEGPRITIAYDVIPLRLIPREWEQHWIPLV*
Ga0103775_103429Ga0103775_1034291F085203IFASPAVKAVIKRMDGILKRKPKQAFDLWRRYVQAVNNKEFLDGVKSRELKAKLDKVARRTLRDATERILGDGSKVKGAIKKIYMAMQRMPKVALEKWRKYLQGLKDKSFFDNLRSAKLLNCLSRIPTRRTRDAAQRILGGGNKIKGCLQNLINGLKNIPKKALRRWNKTVDDIKNKRLYDNARSAKLLNALEKIQRRTMKEAADRCIGFIFASPAVKAVIKRMDGILKR
Ga0103775_103802Ga0103775_1038022F015952MSKNSARSMYTQLMEWIPTLGRTVVPKKEQSQSKFSKADHYKSKGAYGKAGN*
Ga0103775_104196Ga0103775_1041962F038004MAVKLGSMDTHIVLTALWDYRETLTDFDEAPPNPQVDEKIQRVDRLIKHYKQSFFALDRLGIY*
Ga0103775_104343Ga0103775_1043432F087193MAVQRATEFETLRVLYTLWKNRDIDIVQVKNILNENYGLELTVLTNGEITAQSLDGKTKYSIK*
Ga0103775_104487Ga0103775_1044872F042867MYGAVSDVAPRQVVTPLAVVHTGFALATVGAATSRDAASAVPATSVKERLNLKFLMSYLVILSLA
Ga0103775_104847Ga0103775_1048471F060948ITLIIAVNIMNTFFLNLGKFYWWLFTDKNLNSDTLIRLAYGHYVSAFFLFYLGVLHSFDMHYD*
Ga0103775_105170Ga0103775_1051701F082580IIFIFDKTLIMKGDKYWASNPKKNGSYLGQGRVEGRPASINSLKEDMSCACKPGFKLMYKNTKDKKYCD*
Ga0103775_105547Ga0103775_1055471F076150NAVGKLVRRTGNVGCQFEVGTPRGITRRNYAKNKIIQFYYCEFHYDRVLKTERYVRVQVVLLPTLMIPYQRNCFEVILMYGNGDISQSS*
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