NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F105025

Metagenome / Metatranscriptome Family F105025

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105025
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 60 residues
Representative Sequence MDTHQATASFTGLLATATGLTVSMLPELEAWLRIASLVIGCLVGLASLYAILRNKKHPHE
Number of Associated Samples 66
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 20.00 %
% of genes near scaffold ends (potentially truncated) 21.00 %
% of genes from short scaffolds (< 2000 bps) 59.00 %
Associated GOLD sequencing projects 61
AlphaFold2 3D model prediction Yes
3D model pTM-score0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (44.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater
(34.000 % of family members)
Environment Ontology (ENVO) Unclassified
(74.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(55.000 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 60.23%    β-sheet: 0.00%    Coil/Unstructured: 39.77%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.42
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF13539Peptidase_M15_4 10.00
PF05257CHAP 9.00
PF00149Metallophos 4.00
PF03237Terminase_6N 3.00
PF03796DnaB_C 2.00
PF07812TfuA 2.00
PF01402RHH_1 1.00
PF07275ArdA 1.00
PF02557VanY 1.00
PF13385Laminin_G_3 1.00
PF13884Peptidase_S74 1.00
PF00856SET 1.00
PF01510Amidase_2 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG0305Replicative DNA helicaseReplication, recombination and repair [L] 2.00
COG1066DNA repair protein RadA/Sms, contains AAA+ ATPase domainReplication, recombination and repair [L] 2.00
COG3482Uncharacterized conserved proteinFunction unknown [S] 2.00
COG1876LD-carboxypeptidase LdcB, LAS superfamilyCell wall/membrane/envelope biogenesis [M] 1.00
COG2173D-alanyl-D-alanine dipeptidaseCell wall/membrane/envelope biogenesis [M] 1.00
COG4734Antirestriction protein ArdADefense mechanisms [V] 1.00

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms56.00 %
UnclassifiedrootN/A44.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300003413|JGI25922J50271_10005348All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage3618Open in IMG/M
3300003413|JGI25922J50271_10015023All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2022Open in IMG/M
3300004125|Ga0066182_10074765Not Available787Open in IMG/M
3300005581|Ga0049081_10041117Not Available1755Open in IMG/M
3300005581|Ga0049081_10168496Not Available795Open in IMG/M
3300005582|Ga0049080_10116753All Organisms → cellular organisms → Bacteria903Open in IMG/M
3300005582|Ga0049080_10193367Not Available674Open in IMG/M
3300005582|Ga0049080_10308150Not Available510Open in IMG/M
3300005805|Ga0079957_1093457All Organisms → cellular organisms → Bacteria1660Open in IMG/M
3300005805|Ga0079957_1098691All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → Clostridium scatologenes1599Open in IMG/M
3300005805|Ga0079957_1142095All Organisms → cellular organisms → Bacteria1234Open in IMG/M
3300006641|Ga0075471_10074667All Organisms → cellular organisms → Bacteria1849Open in IMG/M
3300006917|Ga0075472_10063423All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1764Open in IMG/M
3300007363|Ga0075458_10156672Not Available704Open in IMG/M
3300007559|Ga0102828_1018776Not Available1486Open in IMG/M
3300007708|Ga0102859_1025879All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1556Open in IMG/M
3300008261|Ga0114336_1001995All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage15497Open in IMG/M
3300008266|Ga0114363_1021470All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2836Open in IMG/M
3300008572|Ga0103775_100794Not Available1399Open in IMG/M
3300009161|Ga0114966_10296019All Organisms → cellular organisms → Bacteria981Open in IMG/M
3300009163|Ga0114970_10190055All Organisms → cellular organisms → Bacteria1214Open in IMG/M
3300009185|Ga0114971_10054723All Organisms → cellular organisms → Bacteria2501Open in IMG/M
3300010885|Ga0133913_11644346All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1618Open in IMG/M
3300012017|Ga0153801_1011555All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1601Open in IMG/M
3300012666|Ga0157498_1023330All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage962Open in IMG/M
3300013372|Ga0177922_10769727Not Available577Open in IMG/M
3300013372|Ga0177922_10830313Not Available500Open in IMG/M
3300017761|Ga0181356_1037967Not Available1703Open in IMG/M
3300017774|Ga0181358_1285341Not Available508Open in IMG/M
3300017777|Ga0181357_1335272Not Available506Open in IMG/M
3300017785|Ga0181355_1051002All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1758Open in IMG/M
3300019784|Ga0181359_1014112All Organisms → cellular organisms → Bacteria2926Open in IMG/M
3300019784|Ga0181359_1103154Not Available1043Open in IMG/M
3300020048|Ga0207193_1001812Not Available37907Open in IMG/M
3300020048|Ga0207193_1466733Not Available838Open in IMG/M
3300020151|Ga0211736_10285279All Organisms → cellular organisms → Bacteria4289Open in IMG/M
3300020161|Ga0211726_10790444Not Available970Open in IMG/M
3300022190|Ga0181354_1179737Not Available644Open in IMG/M
3300022190|Ga0181354_1217078Not Available561Open in IMG/M
3300023174|Ga0214921_10003449Not Available24131Open in IMG/M
3300023174|Ga0214921_10003543Not Available23759Open in IMG/M
3300023174|Ga0214921_10050728All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage3655Open in IMG/M
3300023184|Ga0214919_10345501Not Available996Open in IMG/M
3300023184|Ga0214919_10385604Not Available917Open in IMG/M
3300023184|Ga0214919_10450805Not Available813Open in IMG/M
3300024346|Ga0244775_10038410All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage4227Open in IMG/M
3300025848|Ga0208005_1120255All Organisms → cellular organisms → Bacteria820Open in IMG/M
3300025848|Ga0208005_1189200All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage639Open in IMG/M
3300025872|Ga0208783_10036082All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2327Open in IMG/M
3300025872|Ga0208783_10157452Not Available961Open in IMG/M
3300025872|Ga0208783_10412024Not Available520Open in IMG/M
3300027608|Ga0208974_1184979Not Available511Open in IMG/M
3300027659|Ga0208975_1000418Not Available21158Open in IMG/M
3300027659|Ga0208975_1018894All Organisms → cellular organisms → Bacteria2280Open in IMG/M
3300027659|Ga0208975_1052613Not Available1248Open in IMG/M
3300027679|Ga0209769_1017138All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2573Open in IMG/M
3300027707|Ga0209443_1219941Not Available660Open in IMG/M
(restricted) 3300027728|Ga0247836_1229025All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage714Open in IMG/M
(restricted) 3300027730|Ga0247833_1018426All Organisms → cellular organisms → Bacteria5376Open in IMG/M
3300027747|Ga0209189_1000315Not Available41188Open in IMG/M
3300027756|Ga0209444_10082708All Organisms → cellular organisms → Bacteria1355Open in IMG/M
3300027760|Ga0209598_10035014All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2725Open in IMG/M
3300027769|Ga0209770_10000138Not Available41391Open in IMG/M
3300027769|Ga0209770_10001679All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage11382Open in IMG/M
3300027805|Ga0209229_10069491All Organisms → cellular organisms → Bacteria1579Open in IMG/M
3300027805|Ga0209229_10263352Not Available765Open in IMG/M
3300027969|Ga0209191_1155475All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage930Open in IMG/M
(restricted) 3300028044|Ga0247838_1037881All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium2648Open in IMG/M
(restricted) 3300028569|Ga0247843_1014567All Organisms → cellular organisms → Bacteria7337Open in IMG/M
3300031758|Ga0315907_10164732All Organisms → cellular organisms → Bacteria1872Open in IMG/M
3300031857|Ga0315909_10062779All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage3367Open in IMG/M
3300031951|Ga0315904_10026259All Organisms → cellular organisms → Bacteria6879Open in IMG/M
3300031951|Ga0315904_10114283All Organisms → cellular organisms → Bacteria → Proteobacteria2809Open in IMG/M
3300031951|Ga0315904_10143800All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2427Open in IMG/M
3300031951|Ga0315904_10746565All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage814Open in IMG/M
3300032116|Ga0315903_10320875All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1298Open in IMG/M
3300033979|Ga0334978_0000517Not Available23480Open in IMG/M
3300033980|Ga0334981_0399059Not Available589Open in IMG/M
3300033994|Ga0334996_0010616All Organisms → cellular organisms → Bacteria6123Open in IMG/M
3300033994|Ga0334996_0067541All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Leptolyngbyaceae → unclassified Leptolyngbyaceae → Leptolyngbyaceae cyanobacterium JSC-122166Open in IMG/M
3300033994|Ga0334996_0288325All Organisms → cellular organisms → Bacteria823Open in IMG/M
3300033996|Ga0334979_0232659Not Available1073Open in IMG/M
3300034012|Ga0334986_0000354Not Available39856Open in IMG/M
3300034012|Ga0334986_0000968All Organisms → cellular organisms → Bacteria25115Open in IMG/M
3300034012|Ga0334986_0002720Not Available14298Open in IMG/M
3300034019|Ga0334998_0001135Not Available22161Open in IMG/M
3300034022|Ga0335005_0037925All Organisms → cellular organisms → Bacteria → Proteobacteria3299Open in IMG/M
3300034022|Ga0335005_0201990All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1232Open in IMG/M
3300034023|Ga0335021_0000238Not Available39218Open in IMG/M
3300034023|Ga0335021_0156432All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1294Open in IMG/M
3300034068|Ga0334990_0032001All Organisms → cellular organisms → Bacteria2810Open in IMG/M
3300034068|Ga0334990_0079813All Organisms → cellular organisms → Bacteria1763Open in IMG/M
3300034102|Ga0335029_0000417All Organisms → cellular organisms → Bacteria34168Open in IMG/M
3300034102|Ga0335029_0000773Not Available25526Open in IMG/M
3300034104|Ga0335031_0391379All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage876Open in IMG/M
3300034105|Ga0335035_0053575All Organisms → cellular organisms → Bacteria2655Open in IMG/M
3300034107|Ga0335037_0000190Not Available40782Open in IMG/M
3300034107|Ga0335037_0389966All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage753Open in IMG/M
3300034107|Ga0335037_0415194Not Available725Open in IMG/M
3300034283|Ga0335007_0375852Not Available899Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater34.00%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake17.00%
Freshwater LenticEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic9.00%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous8.00%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake7.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater7.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater5.00%
LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Lake3.00%
Freshwater And SedimentEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment2.00%
Freshwater, PlanktonEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton2.00%
Freshwater Lake SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment2.00%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine2.00%
Freshwater, Surface IceEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Surface Ice1.00%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine1.00%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300003413Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DDEnvironmentalOpen in IMG/M
3300004125Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SD (version 2)EnvironmentalOpen in IMG/M
3300005581Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRFEnvironmentalOpen in IMG/M
3300005582Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRFEnvironmentalOpen in IMG/M
3300005805Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USAEnvironmentalOpen in IMG/M
3300006641Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_DNAEnvironmentalOpen in IMG/M
3300006917Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_<0.8_DNAEnvironmentalOpen in IMG/M
3300007363Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_<0.8_DNAEnvironmentalOpen in IMG/M
3300007559Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.541EnvironmentalOpen in IMG/M
3300007708Estuarine microbial communities from the Columbia River estuary - metaG 1371B-02EnvironmentalOpen in IMG/M
3300008261Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NAEnvironmentalOpen in IMG/M
3300008266Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NAEnvironmentalOpen in IMG/M
3300008572Microbial communities of Cyanobacterial mats from a recreation lake in Champs-sur-Marne, France - CSM2012-AB-F-NEnvironmentalOpen in IMG/M
3300009161Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaGEnvironmentalOpen in IMG/M
3300009163Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaGEnvironmentalOpen in IMG/M
3300009185Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaGEnvironmentalOpen in IMG/M
3300010885northern Canada Lakes Co-assemblyEnvironmentalOpen in IMG/M
3300012017Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Top - Depth 1mEnvironmentalOpen in IMG/M
3300012666Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Surface Ice version 2EnvironmentalOpen in IMG/M
3300013372Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPsEnvironmentalOpen in IMG/M
3300017761Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.NEnvironmentalOpen in IMG/M
3300017774Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.DEnvironmentalOpen in IMG/M
3300017777Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.D.NEnvironmentalOpen in IMG/M
3300017785Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.NEnvironmentalOpen in IMG/M
3300019784Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300020048Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915EnvironmentalOpen in IMG/M
3300020151Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1EnvironmentalOpen in IMG/M
3300020161Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1EnvironmentalOpen in IMG/M
3300022190Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.NEnvironmentalOpen in IMG/M
3300023174Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505EnvironmentalOpen in IMG/M
3300023184Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503EnvironmentalOpen in IMG/M
3300024346Whole water sample coassemblyEnvironmentalOpen in IMG/M
3300025848Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025872Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027608Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027659Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027679Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.DN (SPAdes)EnvironmentalOpen in IMG/M
3300027707Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DCMD (SPAdes)EnvironmentalOpen in IMG/M
3300027728 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14mEnvironmentalOpen in IMG/M
3300027730 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_8mEnvironmentalOpen in IMG/M
3300027747Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027756Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DN (SPAdes)EnvironmentalOpen in IMG/M
3300027760Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027769Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)EnvironmentalOpen in IMG/M
3300027805Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)EnvironmentalOpen in IMG/M
3300027969Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300028044 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_15mEnvironmentalOpen in IMG/M
3300028569 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2017_8mEnvironmentalOpen in IMG/M
3300031758Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123EnvironmentalOpen in IMG/M
3300031857Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125EnvironmentalOpen in IMG/M
3300031951Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120EnvironmentalOpen in IMG/M
3300032116Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119EnvironmentalOpen in IMG/M
3300033979Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME30Aug2017-rr0003EnvironmentalOpen in IMG/M
3300033980Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME09Aug2015-rr0007EnvironmentalOpen in IMG/M
3300033994Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046EnvironmentalOpen in IMG/M
3300033996Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004EnvironmentalOpen in IMG/M
3300034012Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027EnvironmentalOpen in IMG/M
3300034019Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Sep2014-rr0049EnvironmentalOpen in IMG/M
3300034022Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Apr2018-rr0058EnvironmentalOpen in IMG/M
3300034023Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Oct2016-rr0090EnvironmentalOpen in IMG/M
3300034068Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Apr2016-rr0031EnvironmentalOpen in IMG/M
3300034102Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112EnvironmentalOpen in IMG/M
3300034104Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120EnvironmentalOpen in IMG/M
3300034105Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15May2014-rr0127EnvironmentalOpen in IMG/M
3300034107Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Apr2017-rr0133EnvironmentalOpen in IMG/M
3300034283Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
JGI25922J50271_1000534833300003413Freshwater LakeMDTHQATASFTGLVATASGITVSMLPEIEAWLRVSSLVIGCAVGIASFIVIVRKWDVPPKE*
JGI25922J50271_1001502323300003413Freshwater LakeMDTHQATASLTGLLATATGLGVSMLPEIEAWLRIASLLVGIAVGVASLYAILNKKRTPHDP*
Ga0066182_1007476533300004125Freshwater LakeMDTHQTAASFTGLVATATGLTVSMLPELEAWLRVASLVIGCLVGLASLYAILRNKKHPHE
Ga0049081_1004111733300005581Freshwater LenticMDHHHYTATVTGLLATASGLGVSMLPEIEAWLRILSLVIGCAVGVVSFLVIVRKWDGPPEE*
Ga0049081_1016849623300005581Freshwater LenticMDTHQATASFTGLVATASGITVSMLPEIEAWLRVSSLIIGCAVGIASFIVIVRKWDVPPKE*
Ga0049080_1011675323300005582Freshwater LenticMDHHHYTATVTGLLATASGLGVSLLPEIEAWLRILSLVIGCAVGVVSFLVIVRKWDGPPEE*
Ga0049080_1019336743300005582Freshwater LenticMDTHQATASFTGLVATASGITVSLLPEIEAWLRVSSLVIGCAVGIASFIVIVRKWDVPKE
Ga0049080_1030815013300005582Freshwater LenticMDHHQATASFTGLLATASGITVSLLPEIEAWLRIASLVIGCAVGVASFVVIVRKSLDVPP
Ga0079957_109345763300005805LakeRTNRRRPQLMDAHQATASFAGLLATASGITLSMLPELEAWLRIASLLIGCAVGLASLYAILKNKKHPHE*
Ga0079957_109869133300005805LakeMDTHQAAASFTGLVATATGLGVSLLPEIEAWLRIVSLLIGCAVGLASLYAILKRKHPHE*
Ga0079957_114209543300005805LakeMDTHQATASFTGLLATASGITLSMLPELEAWLRIASLLIGCAVGLASLYAILRNKKHPHE
Ga0075471_1007466723300006641AqueousMDTHQATASFTGLVATATGLTVSLLPEIEAWLRIVSLLIGCAVGIASLYAILKNKKPHE*
Ga0075472_1006342323300006917AqueousMDTHQATASFTGLFATASGITLSMLPELEAWLRIASLLIGCAVGLASLYAILKRKHPHE*
Ga0075458_1015667223300007363AqueousMDTHQTTASFTGLLATATGLTVSMLPEIEAWLRIVSLLIGCAVGLASLYAILKNKKHPHE
Ga0102828_101877633300007559EstuarineMDHQHFNATLTGLLATASGITVSLLPEIEAWLRVSSLIIGCAVGIASFIVILRKWDVPPKE*
Ga0102859_102587923300007708EstuarineMDHQHFNATLTGLVATASGITVSLLPEIEAWLRVSSLVIGCAVGIASFIVILRKWDVPKD
Ga0114336_1001995103300008261Freshwater, PlanktonMDTHQATASLTGLVATATGLGVSMLPEIEAWLRIASLLVGIAVGVASLYAILNKKRPPHDP*
Ga0114363_102147043300008266Freshwater, PlanktonMDTHQAAASFTGLVATATGLGVSMLPEIEAWLRIASLLVGIAVGVASLYAILNKKRPPH
Ga0103775_10079413300008572Freshwater LakeMDHHQATASFTGLVATATGLTVSLLPEIEAWLRIASLLIGCAVGLASFAVIVRNWTKN
Ga0114966_1029601913300009161Freshwater LakeLTMDHQHFNATLTGLLATASGITVSLLPEIEAWLRVSSLIIGCAVGIASFIVIVRKWDVPKE*
Ga0114970_1019005523300009163Freshwater LakeMDTHQATASFTGLLATAGGITVSMLPEIEAWLRVSSLVIGCAVGIASFIVILRKWDVPPKD*
Ga0114971_1005472323300009185Freshwater LakeMDHQHFNATLTGLVATASGITVSLLPEIEAWLRVSSLIIGCAVGIASFIVILRKWDVPKE
Ga0133913_1164434623300010885Freshwater LakeMDHQHFNATLTGLLATASGITVSLLPEIEAWLRVSSLVIGCAVGIASFIVILRKWDVPPKD*
Ga0153801_101155523300012017FreshwaterMDHHHYTATVTGLLATASGLGVSLLPEIEAWLRILSLVIGCAVGVVSFLVIVRKWDVPPED*
Ga0157498_102333023300012666Freshwater, Surface IceMDHHHYTATVTGLLATASGLGVSMLPEIEAWLRILSLVIGCAVGVVSFLVIVRKWDVPPEE*
Ga0177922_1076972723300013372FreshwaterMDTHQATASFTGLVATASGITVSLLPEIEAWLRVSSLVIGCAVGIASFIVILRKWDVPKE
Ga0177922_1083031323300013372FreshwaterMDHHHYTATVTGLLATASGLGVSLLPEIEAWLRILSLVIGCAVGVVSFLVIVRKWDGPPED*
Ga0181356_103796723300017761Freshwater LakeMDTHQAIASFTGLVATATGLTVSMLPELEAWLRVASLVIGCLVGLASLYAILRNRKHPQ
Ga0181358_128534123300017774Freshwater LakeMDTHQATASFTGLLATAGGITVSMLPELEAWLRIASLVIGCLVGLASLYAILKNRKHPHE
Ga0181357_133527213300017777Freshwater LakeRTQLMDTHQATASLTGLLATATGLTVSMLPELEAWLRIASLVIGCLVGLASLYAILKNRKHPHE
Ga0181355_105100213300017785Freshwater LakeSQPPSADMDTHQATASFTGLLATATGLTVSMLPELEAWLRVASLVIGCLVGLASLYAILRNRKTPQ
Ga0181359_101411233300019784Freshwater LakeMDTHQATASLTGLLATATGLTVSMLPELEAWLRIASLVIGCLVGLASLYAILKNRKHPHE
Ga0181359_110315423300019784Freshwater LakeMDTHQTAASFTGLLATATGLTVSMLPELEAWLRIASLVIGCLVGLASLYAILKNRKHPHE
Ga0207193_1001812473300020048Freshwater Lake SedimentMDTHQATASFTGLLATATGLTVSMLPELEAWLRIASLVIGCLVGLASLYAILRNKKHPHE
Ga0207193_146673323300020048Freshwater Lake SedimentMDTHQATASLTGLVATATGLTVSLLPEIEAWLRIASLLVGIAVGVASLYAILNKKRPPHD
Ga0211736_1028527953300020151FreshwaterMDHHHYTATVTGLLATASGLGVSLLPEIEAWLRILSLVIGCAVGVVSFLVIVRKWDVPPE
Ga0211726_1079044423300020161FreshwaterMDHHHYTATVTGLLATASGLGVSLLPEIEAWLRILSLVIGCAVGVVSF
Ga0181354_117973713300022190Freshwater LakeMDTHQATASFTGLLATAGGITVSMLPELEAWLRVSSLIIGCAVGIASLL
Ga0181354_121707833300022190Freshwater LakeMDTHQATASFTGLLATATGLTVSMLPELEAWLRIASLVIGCLVGLASLYAILKNRKHPHE
Ga0214921_10003449113300023174FreshwaterMDTHQATASFTGLLATASGITLSMLPELEAWLRVASLVIGCLVGLASLYAILRNKKHPHE
Ga0214921_1000354363300023174FreshwaterMDTHQATASFTGLVATATGLTVSLLPEIEAWLRIASLLVGIAVGVASLYAILNKKRPQHD
Ga0214921_1005072853300023174FreshwaterMDTHQATASFTGLLATASGITLSMLPELEAWLRVASLVIGCLVGLASLYAILRNRKHPHE
Ga0214919_1034550133300023184FreshwaterMDHQHFNATLTGLLATASGITVSLLPEIEAWLRVSSLIIGCAVGIASFIVIVRKWNLPPE
Ga0214919_1038560423300023184FreshwaterMDHQHFNATLTGLVATASGITVSLLPEIEAWLRVSSLIIGCAVGVASFIVIVRKWDEPKE
Ga0214919_1045080523300023184FreshwaterMDHHQATASFTGLVATATGITVSLLPEIEAWLRVASLVIGCAVGIASFIVIVRKWHLPPE
Ga0244775_1003841023300024346EstuarineMDHQHFNATLTGLLATASGITVSLLPEIEAWLRVSSLIIGCAVGIASFIVILRKWDVPPK
Ga0208005_112025543300025848AqueousRPQLTMDTHQATASFTGLFATASGITLSMLPELEAWLRIASLLIGCAVGLASLYAILKRKHPHE
Ga0208005_118920023300025848AqueousMDTHQATASFTGLVATATGLTVSLLPEIEAWLRIVSLLIGCAVGIASLYAILKNKKPHE
Ga0208783_1003608213300025872AqueousMDTHQATASFTGLFATASGITLSMLPELEAWLRIASLLIGCAVGLASLYAILKNKKHPHE
Ga0208783_1015745233300025872AqueousMDTHQATASFTGLLATATGLTVSMLPEIEAWLRIVSLLIGCAVGLASLYAILKNKKHSHE
Ga0208783_1041202413300025872AqueousTGLFATASGITLSMLPELEAWLRIASLLIGCAVGLASLYAILKRKHPHE
Ga0208974_118497913300027608Freshwater LenticMDTHQATASFTGLVATASGITVSLLPEIEAWLRVSSLVIGCAVGIASFIVIVRKWDVPP
Ga0208975_1000418143300027659Freshwater LenticMDHHHYTATVTGLLATASGLGVSMLPEIEAWLRILSLVIGCAVGVVSFLVIVRKWDGPPE
Ga0208975_101889433300027659Freshwater LenticMDTHQATASFTGLVATASGITVSMLPEIEAWLRVSSLIIGCAVGIASFIVIVRKWDVPPK
Ga0208975_105261323300027659Freshwater LenticMDTHQATASFTGLVATASGVTVSLLPEIEAWLRVSSLVIGCAVGIASFIVILRKWDVPKE
Ga0209769_101713843300027679Freshwater LakeMDTHQATASFTGLLATAGGITVSMLPELEAWLRVSSLIIGCAVGIASLLVILRKWDVPPK
Ga0209443_121994123300027707Freshwater LakeMDTHQATASFTGLLATASGITVSLLPEIEAWLRVSSLVIGCAVGIASFIVILRKWDVPKE
(restricted) Ga0247836_122902513300027728FreshwaterMDTHHATATFTGLLATTSGLTVSMLPEVEAWLRVTSLIIGCLVGLASLYAILRNRKTNPTNPN
(restricted) Ga0247833_101842623300027730FreshwaterMDTHHATATFTGLLATTSGLTVSMLPEVEAWLRVTSLIIGCLVGLASLYAILRNRKTNPTNPTNPNDPL
Ga0209189_1000315443300027747Freshwater LakeMDTHQATASFTGLLATASGITLSMLPELEAWLRVASLVIGCAVGLASLYAILRNKKHPHE
Ga0209444_1008270833300027756Freshwater LakeMDTHQATASFTGLLATAGGITVSMLPEIEAWLRVSSLVIGCAVGIASFIVILRKWDVPKE
Ga0209598_1003501413300027760Freshwater LakeMDHQQATASFTGLLATASGITLSMLPELEAWLRVASLVIGCLVGLASLYAILRNRKHPHE
Ga0209770_10000138193300027769Freshwater LakeMDTHQATASLTGLLATATGLGVSMLPEIEAWLRIASLLVGIAVGVASLYAILNKKRTPHD
Ga0209770_1000167953300027769Freshwater LakeMDTHQATASFTGLVATASGITVSMLPEIEAWLRVSSLVIGCAVGIASFIVIVRKWDVPPK
Ga0209229_1006949143300027805Freshwater And SedimentMDTHQATASFTGLLATASGITLSMLPELEAWLRVASLVIGCLVGLASLYAILRNRKPPQ
Ga0209229_1026335223300027805Freshwater And SedimentMDTHQATASFTGLVATATGLGVSMLPEIEAWLRIASLLVGIAVGVASLYAILKRKHPHE
Ga0209191_115547543300027969Freshwater LakeMDTHQATASFTGLLATATGLTVSMLPELEAWLRIASLLIGCLVGLASLYAILRNRKHPHE
(restricted) Ga0247838_103788173300028044FreshwaterSANMDTHHATATFTGLLATTSGLTVSMLPEVEAWLRVTSLIIGCLVGLASLYAILRNRKTNPTNPTNPNDPL
(restricted) Ga0247843_101456793300028569FreshwaterMDTHHATATFTGLLATTSGLTVSMLPEVEAWLRVTSLIIGCLVGLASLYAILRNRKTNPTNPTNPNDPNDPL
Ga0315907_1016473233300031758FreshwaterMDTHQATASFTGLLATAGGITVSMLPELEAWLRVASLVIGCLVGLASLYAILRNKKHPHE
Ga0315909_1006277923300031857FreshwaterMDTHQAAASFTGLVATATGLGVSMLPEIEAWLRIASLLVGIAVGVASLYAILNKKRPPHD
Ga0315904_10026259103300031951FreshwaterFTGLVATATGLGVSMLPEIEAWLRIASLLVGIAVGVASLYAILNKKRPPHDP
Ga0315904_1011428313300031951FreshwaterMDTHQATASFTGLVATATGLGVSMLPEIEAWLRIASLLVGIAVGVASLYAI
Ga0315904_1014380033300031951FreshwaterMDTHQATASFTGLVATATGLTVSMLPEIEAWLRIASLLVGIAVGVASLYAILKRKHPHE
Ga0315904_1074656513300031951FreshwaterMDTHQAAASFTGLVATATGLGVSMLPEIEAWLRIASLLVGIAVGVASLYAI
Ga0315903_1032087543300032116FreshwaterMDTHHATATFTGLLATTSGLTVSMLPEVEAWLRVASLIIGCAVGLASLYAILRNRKHPQ
Ga0334978_0000517_18762_189443300033979FreshwaterMDTQQATASFTGLLATATGLTVSMLPELEAWLRVASLVIGCLVGLASLYAILRNRKHPHE
Ga0334981_0399059_3_1673300033980FreshwaterMDHHQAAASFTGLVATATGLTVSLLPEIEAWLRIASLLIGCAVGLASFAVIVRNW
Ga0334996_0010616_3234_34253300033994FreshwaterMDHHQAAASFTGLVATATGLTVSLLPEIEAWLRIASLLIGCAVGLASFAVIVRNWTKNHPPHE
Ga0334996_0067541_310_4923300033994FreshwaterMDTHQATASFTGLIATATGLTVSMLPELEAWLRIASLVIGCLVGLASLYAILRNRKHPHE
Ga0334996_0288325_528_7193300033994FreshwaterMDTHQATASFTGLLATATGLTVSLLPEIEAWLRIASLLIGCAVGLASFAVIVRNWTKNHHPHE
Ga0334979_0232659_418_6033300033996FreshwaterMETHQVTASFTGLLATATGLTVSLLPEIEAWLRIASLLIGCLVGIASLYAILRKKSPPHD
Ga0334986_0000354_27815_279973300034012FreshwaterMDTHQATASFTGLLATASGLTLSMLPELEAWLRIASLLIGCAVGLASLYAILKNRKHPHE
Ga0334986_0000968_17326_175113300034012FreshwaterMDTHQATASFTGLVATATGLGVSMLPEIEAWLRIASLLVGIAVGVASLYAILNKKRPPHD
Ga0334986_0002720_2945_31273300034012FreshwaterMDTHQATASFTGLLATASGITLSMLPELEAWLRIASLIIGCAVGLASLYAILRNKKHPHE
Ga0334998_0001135_14934_151193300034019FreshwaterMDTHQAAASFTGLVATATGLTVSLLPEIEAWLRIASLLVGIAVGVASLYAILNKKRPPLD
Ga0335005_0037925_1208_13933300034022FreshwaterMDTHQATASFTGMLATAGGITVSMLPEIEAWLRVSSLVIGCAVGIASFIVILRKWDVPPK
Ga0335005_0201990_1_1233300034022FreshwaterMDHQHFNATLTGLLATASGVTVSLLPEIEAWLRVSSLVIGC
Ga0335021_0000238_18665_188473300034023FreshwaterMDTHQATASFTGLLATATGLTVSMLPELEAWLRIASLLIGCAVGLASLYAILKNKKHPHE
Ga0335021_0156432_701_8833300034023FreshwaterMDAHQATASFTGLLATASGITLSMLPELEAWLRIASLLIGCAVGLASLYAILRNKKHPHE
Ga0334990_0032001_2616_28073300034068FreshwaterMDTHHPLATFTGIFATTTSVGISMLPELEAWLRILSLIIGCLVGLASLYAILRSRKTNPTEPQ
Ga0334990_0079813_1269_14483300034068FreshwaterMDTHHPLATFTGIFATTTSVGISMLPELEAWLRILSLVIGCAVGIASLYVILTRKHPPE
Ga0335029_0000417_14645_148303300034102FreshwaterMDHHQAAASFTGLVATATGLTVSMLPEIEAWLRIASLLVGIAVGVASLYALLNKKRPPHD
Ga0335029_0000773_20078_202693300034102FreshwaterMDTHQAAASFTGLVATATGLTVSLLPEIEAWLRIASLLIGCAVGLASFAVIVRNWTKNHHPHE
Ga0335031_0391379_12_2033300034104FreshwaterMDTHQAAASFTGLVATATGLTVSLLPEIEAWLRIASLLIGCAVGLASFAVIVRNWTKNHPPHE
Ga0335035_0053575_1688_18673300034105FreshwaterMDTHQATASLTGLLATASGITLSMLPELEAWLRVASLVIGCLVGLASLYAILRNRKHPQ
Ga0335037_0000190_9307_94923300034107FreshwaterMDTHQATASFTGLVATASGITVSMLPEIEAWLRVSSLVIGCAVGIASFIVILRKWDVPPK
Ga0335037_0389966_1_1773300034107FreshwaterDTHQATASFTGLLATASGITLSMLPELEAWLRVASLVIGCLVGLASLYAILRNRKHPQ
Ga0335037_0415194_188_3703300034107FreshwaterMDHQHFNATLTGLLATASGVTVSLLPEIEAWLRVSSLVIGCAVGIASFIVILRKWDVPKE
Ga0335007_0375852_103_2943300034283FreshwaterMDHHQAAASFTGLVATATGLTVSLLPEIEAWLRIASLLIGCAVGLASFAVIVRNWTKNHHPHE

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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