Sample 3300008251

Basic Information
IMG/M Taxon OID	3300008251 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0118071 \| Gp0127834 \| Ga0105359
Sample Name	Methane-oxidizing microbial communities from mesocosms in the Gulf of Mexico - GOM8C Gulf of Mexico
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300008251 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0118071 | Gp0127834 | Ga0105359

Sample Name

Methane-oxidizing microbial communities from mesocosms in the Gulf of Mexico - GOM8C Gulf of Mexico

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	1019492571
Sequencing Scaffolds	29
Novel Protein Genes	31
Associated Families	28

Dataset Contents

Total Genome Size

1019492571

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group → Pseudomonas aeruginosa	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
Not Available	20
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group → Pseudomonas aeruginosa

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria

Not Available

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales

All Organisms → cellular organisms → Bacteria → Proteobacteria

Ecosystem Assignment (GOLD)
Name	Methane-Oxidizing Microbial Communities From Mesocosms In The Gulf Of Mexico And Hudson Canyon, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Unclassified → Unclassified → Methane Seep Mesocosm → Methane-Oxidizing Microbial Communities From Mesocosms In The Gulf Of Mexico And Hudson Canyon, Usa

Ecosystem Assignment (GOLD)

Name

Methane-Oxidizing Microbial Communities From Mesocosms In The Gulf Of Mexico And Hudson Canyon, Usa

Type

Environmental

Taxonomy

Environmental → Aquatic → Marine → Unclassified → Unclassified → Methane Seep Mesocosm → Methane-Oxidizing Microbial Communities From Mesocosms In The Gulf Of Mexico And Hudson Canyon, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine cold seep biome → mesocosm → sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine cold seep biome → mesocosm → sediment

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location	Gulf of Mexico
Coordinates	Lat. (^o)	27.37	Long. (^o)	-90.57	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Gulf of Mexico

Coordinates

Lat. (^o)

27.37

Long. (^o)

-90.57

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000245	Metagenome / Metatranscriptome	1468	Y
F001048	Metagenome / Metatranscriptome	793	Y
F002006	Metagenome / Metatranscriptome	605	Y
F002187	Metagenome / Metatranscriptome	585	Y
F003285	Metagenome / Metatranscriptome	496	Y
F005429	Metagenome / Metatranscriptome	401	Y
F005610	Metagenome / Metatranscriptome	395	Y
F006321	Metagenome / Metatranscriptome	376	Y
F006552	Metagenome	370	Y
F010479	Metagenome / Metatranscriptome	303	Y
F011620	Metagenome / Metatranscriptome	289	Y
F013191	Metagenome / Metatranscriptome	273	N
F015654	Metagenome / Metatranscriptome	253	N
F021319	Metagenome	219	N
F033592	Metagenome / Metatranscriptome	177	Y
F041826	Metagenome / Metatranscriptome	159	Y
F042379	Metagenome / Metatranscriptome	158	Y
F047723	Metagenome	149	Y
F049927	Metagenome	146	Y
F054946	Metagenome / Metatranscriptome	139	Y
F059331	Metagenome	134	Y
F061265	Metagenome / Metatranscriptome	132	Y
F063067	Metagenome / Metatranscriptome	130	Y
F066857	Metagenome / Metatranscriptome	126	N
F086145	Metagenome / Metatranscriptome	111	N
F097523	Metagenome	104	Y
F101886	Metagenome / Metatranscriptome	102	N
F105490	Metagenome	100	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0105359_10076316	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group → Pseudomonas aeruginosa	1993	Open in IMG/M
Ga0105359_10082996	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1885	Open in IMG/M
Ga0105359_10157637	Not Available	1227	Open in IMG/M
Ga0105359_10174128	Not Available	1145	Open in IMG/M
Ga0105359_10179114	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group → Pseudomonas aeruginosa	1123	Open in IMG/M
Ga0105359_10204976	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	1021	Open in IMG/M
Ga0105359_10232925	Not Available	934	Open in IMG/M
Ga0105359_10245116	Not Available	901	Open in IMG/M
Ga0105359_10263276	Not Available	856	Open in IMG/M
Ga0105359_10272750	Not Available	834	Open in IMG/M
Ga0105359_10294631	Not Available	790	Open in IMG/M
Ga0105359_10320183	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	745	Open in IMG/M
Ga0105359_10323607	Not Available	739	Open in IMG/M
Ga0105359_10386330	Not Available	653	Open in IMG/M
Ga0105359_10393092	Not Available	645	Open in IMG/M
Ga0105359_10439080	Not Available	597	Open in IMG/M
Ga0105359_10445109	Not Available	592	Open in IMG/M
Ga0105359_10446337	Not Available	590	Open in IMG/M
Ga0105359_10460862	Not Available	577	Open in IMG/M
Ga0105359_10462061	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
Ga0105359_10464714	Not Available	574	Open in IMG/M
Ga0105359_10493025	Not Available	551	Open in IMG/M
Ga0105359_10507947	Not Available	540	Open in IMG/M
Ga0105359_10511482	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales	537	Open in IMG/M
Ga0105359_10513938	Not Available	535	Open in IMG/M
Ga0105359_10536991	Not Available	518	Open in IMG/M
Ga0105359_10543422	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group → Pseudomonas aeruginosa	514	Open in IMG/M
Ga0105359_10555016	All Organisms → cellular organisms → Bacteria → Proteobacteria	506	Open in IMG/M
Ga0105359_10556215	Not Available	505	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105359_10076316	Ga0105359_100763162	F101886	MLKKILIIGFCLFNVAFFIQIGIEVAAVTPEQAMLEGMTQRIYASISTLDYIMAALWGAILYTILTAKKEHFLRASYLYLGFYLCDIHFSHYMSIEMNDPYFTPGALA
Ga0105359_10082996	Ga0105359_100829962	F101886	MLKKSAIIGFCLFNVVLFILIGIEVAAVTPEQAMLEGMTQRIYASISTIDYIMATLWGAILYTILTANKEHFLRASWLYLGFYLCDIHFGHYMSMEMSDPYFTPGALALVVIQAWFLYWAKNKISAANAAVPS*
Ga0105359_10157637	Ga0105359_101576372	F066857	MCRLSCRRLDYLHDWQEKAKRVIDIFLITKGNVQFLDVFCIFQCQQNKGFSHFLDTDSKLTVYRDGVVRPSRKDNIPLPAVFDEFSAMP*
Ga0105359_10174128	Ga0105359_101741282	F086145	MRRIVCKGYAGCWEGIFYTQEASRGYLKLLAFFLIWQKKTTVSLKIPIIVRV*
Ga0105359_10179114	Ga0105359_101791142	F101886	LLANCATKYPLPYEIIYQVKKEEKTMLKKIAIIGFCLFNVVLFILIGIEVAAVTPERAMLEGVTQRIYASISTLDYIMAILWGVILYTILTVKKEHFLRASYLYLGFYLCDIHFSHYMSVEMNDPYFTPGALALVAIQIGFLFWAKNRINTANLALSN*
Ga0105359_10204976	Ga0105359_102049761	F006552	VEIPLLISPVLKIKSSRINPVANIPKPIPIAKKAIDNLNNVGLAVFLNPIYEIVPITRPTKSPTRLRIISKKNSNYADSVTVLNKV*
Ga0105359_10232925	Ga0105359_102329251	F006321	GIEETKDILDFMFSFVEAVGKAQKDGEMTWSDARYFIDPVKKLFEAVDDIEEVLPEIEDLSGEEYDELVEYVRGKWDYDEENLDWIVDTAIDAGKSILMLINMKK*
Ga0105359_10245116	Ga0105359_102451161	F005610	VRSFKEYLTEADSEEVRDAKKVFTALQGMYPKIPKFPLVFKNLKGRGSGYLETSKLKGGKVIFVDKMVIDDSGMSSFEPDYAVVHEFAHAILAVTKGDLGHNKRHADLTYKL
Ga0105359_10263276	Ga0105359_102632762	F011620	MIDKIIQVVLRFFGKEKPEPPTEENNESLEALERIEALDKIGESS*
Ga0105359_10272750	Ga0105359_102727502	F041826	TPPNAECAKASPNRENLLKTRNSPTALQSREMAIPDISACGIDSYVTDSKVILNQW*
Ga0105359_10294631	Ga0105359_102946312	F013191	FDLIPSMHYDTLKQTTDKKYKIGENQPKTDHFIQFAHEGVMYFIWIDPSDPTENIAWWSDTTFEEWVTDTVALRLAAQQNPSETFFYCVGFDYYHDQTKDGIFLGTSITDFHDEKQNSWVGQHKHIEEEFPNSKFIFVGKDMDYGEFENLLNK*
Ga0105359_10320183	Ga0105359_103201831	F005429	MELRKETVEEFLQRGGTVTKVPQVLDTVGSWWGYQERYQAESIKDGTQQVVSWKSVQPVERFDTEDDDRKYWKKLDKRCNQLLKKMKV*
Ga0105359_10323607	Ga0105359_103236071	F049927	KAVGNVDKDFIEVICDPIIPLKKTVIILAVNPKT*
Ga0105359_10345627	Ga0105359_103456273	F000245	MKTFKEYSLDRKLDKYVSDEIKKRKLARHPVNATDDYKMKKGKPDFKFPSPTGEMMIHVWLRPMAKPASKDTKAFNYQLEDK*
Ga0105359_10386330	Ga0105359_103863301	F063067	EKSLIIKDYIDGMEKIMKKHSKILGTLLTDYTKKRIQEPDPDSGDKPMWDELVVNNFKIKKVHISPEFGPDFEDDDDIDGFPFELYQDVGDMVDYITRTVSKIKL*
Ga0105359_10386330	Ga0105359_103863302	F010479	MIRFKQFLREFAQRSTSEYVFDTHSANSSSLKIPISTSMFKRIWPDTIRATVFHATDSLEKLGKLEGGKKSISAFFSMMSRYMEIGVATSGDVHVVAEMDADVLISARDDIW
Ga0105359_10393092	Ga0105359_103930922	F097523	CYFTHNSWNLLPADSYDALKHGLDGTEHETYRRFDCEYFVYISGLAANCIETKSYIIWVPKVMENKIKNIGEEVLEWSTGTSALHIACRDFTCNDYEKVYLLGFDHHNNYYDNIYTDTEHYFSKDSKRVDGWKAEYNNWDKQIFKVIEEHPALQFIWVNYRGDDFPKLPNLFSKDETEIWQA*
Ga0105359_10439080	Ga0105359_104390802	F033592	SESTDLSLTGKGKYGLRPGQLKFGNDKIFTLTTDSNVTSYLLVTEFRRN*
Ga0105359_10445109	Ga0105359_104451092	F054946	LAFLYNSDYERGVPHPPQNFAAGFSGFPQLLQDEDVCLVSAGFGLGL*
Ga0105359_10446337	Ga0105359_104463371	F002006	MPEELQSVKLQVGLLKQEVEARGRQIDALLTKLDSTADKIVELTVEIKSLNSRQERHSKVDDEIRSELKLLHSRAGSIHDEIGKSERRVSDSIHKLEERVRAVEQYKSKLMGIAITVSAGVGLAVASIMGLLNIFKN*
Ga0105359_10460862	Ga0105359_104608622	F042379	MEMKKMTFAPGWVQTIDPANEKQDLLTYINDTHKAVYGYRPRWDREWVDTVTLVDLRAEAKSLEDEVGASNKRDRAEEADRQSEMAAHHIAVSMAKKPVARTFKPFANLKEMLV*
Ga0105359_10462061	Ga0105359_104620612	F003285	MPDQESIHNLQTEIQTLKIKDEFRTKELDALMKKLSDTSSKLNALSENIGRLLAGQDLHKTSDNEVRDELKILHTRIGDLHDKCTEMIDKTETRVSSDISLLYKKVDSLERWRWITIGIATAIAWLLTNI
Ga0105359_10464714	Ga0105359_104647141	F001048	MKIVSTKQFWWRLNYLKRNGGEITVTDRTPEMDVKEFNRIESLVNKRVRWELGSEGYSIWSECGYKDIPTL
Ga0105359_10493025	Ga0105359_104930251	F015654	MKRFFKEVYIKGHGKEDKNTFDTFKDTKFYKVNADKFYKELKDCDNLQYITFGDIKR*
Ga0105359_10507947	Ga0105359_105079472	F105490	MKGHTGKRLRQEGAINRIELSIEKYEKILPAERELLKVGRKEKDLPPDNIPTMEKKIKQFEKKLERAKTTLENTKKNLNI*
Ga0105359_10511482	Ga0105359_105114821	F021319	INGTKIRPPPKPYKLYSMAAKKLAPAVKISKRRDTSMGFSSIFLLRNMYDAEEIRTSANKILKISGDISEDMNAPSMVPGTAIKPSFQPSESSIRFCLAYIAVDATELLNTANRLLLTANVGENPMNVNTGTIIIPPPKPIIDPNIPATNPSGINQSCSNILYRYYFQFRIFRYVKLI
Ga0105359_10513938	Ga0105359_105139381	F059331	NVLGILKATKKTSANGPDPRNIAIRTSLIYPSILLIIVKKPNVVVDLIKFINHISLKFAPIVYIIIVNEKI*
Ga0105359_10536991	Ga0105359_105369912	F047723	PSANNLLKVLGSLKATKKASARKLVPKKIAINMSLT*
Ga0105359_10543422	Ga0105359_105434221	F101886	MLKKSAIIGFCLFNVVLFILIGIEVAAVTPERAMSEGVTQRIYASISTLDYIMAALWWAILYTILTAKTEHFLRASWLYLGFYLCDIHFSHYMSMEMNDPYFTPGALSLVVIQAWFLYWAKNKINAANAAVSN*
Ga0105359_10555016	Ga0105359_105550161	F002187	NAVFVDQKFMQTIQKCNEYEDWEPKGAYWFNRLVKKLRSAQEDFNDTRNKMVTKYADEPDKDGNVKVAEVHIPAFSTAMGELMEEEFEIEGIKPIKFPERLKLSPIEMGLMEEVVDMSAFLDDDEDE*
Ga0105359_10556215	Ga0105359_105562151	F061265	KEYSMSLDWNLIWKILQVVALLIIAREIDKRIRKRKK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300008251: Methane-oxidizing microbial communities from mesocosms in the Gulf of Mexico - GOM8C Gulf of Mexico

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences