NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300007217

3300007217: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S10 NT17 metaT (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300007217 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0114292 | Gp0119833 | Ga0079268
Sample NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S10 NT17 metaT (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size100535059
Sequencing Scaffolds10
Novel Protein Genes11
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae1
Not Available4
All Organisms → cellular organisms → Eukaryota → Sar1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Endopterygota → Diptera → Nematocera → Culicomorpha → Culicoidea → Culicidae → Anophelinae → Anopheles → Cellia → Pyretophorus → gambiae species complex → Anopheles gambiae1
All Organisms → cellular organisms → Eukaryota2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Harpacticoida → Harpacticidae → Tigriopus → Tigriopus californicus1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationSouthern Atlantic ocean
CoordinatesLat. (o)-28.2362Long. (o)-38.4949Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000237Metagenome / Metatranscriptome1498Y
F000481Metagenome / Metatranscriptome1089Y
F001926Metagenome / Metatranscriptome616Y
F005202Metatranscriptome408N
F022892Metagenome / Metatranscriptome212Y
F041786Metagenome / Metatranscriptome159Y
F042355Metagenome / Metatranscriptome158Y
F090441Metatranscriptome108N
F098751Metatranscriptome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0079268_1004121All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae617Open in IMG/M
Ga0079268_1012796Not Available775Open in IMG/M
Ga0079268_1017679Not Available622Open in IMG/M
Ga0079268_1020784All Organisms → cellular organisms → Eukaryota → Sar636Open in IMG/M
Ga0079268_1276399All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Endopterygota → Diptera → Nematocera → Culicomorpha → Culicoidea → Culicidae → Anophelinae → Anopheles → Cellia → Pyretophorus → gambiae species complex → Anopheles gambiae533Open in IMG/M
Ga0079268_1284610All Organisms → cellular organisms → Eukaryota510Open in IMG/M
Ga0079268_1301824Not Available528Open in IMG/M
Ga0079268_1310690All Organisms → cellular organisms → Eukaryota563Open in IMG/M
Ga0079268_1315763Not Available552Open in IMG/M
Ga0079268_1324325All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Harpacticoida → Harpacticidae → Tigriopus → Tigriopus californicus801Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0079268_1004121Ga0079268_10041211F001926VRHEDIPETNNPRIRFPVLEGDKLMKEVLNGGYNVHPVPPPNSEIKERSARRYERKRIKIERLLTLGYTTSGDP*
Ga0079268_1012796Ga0079268_10127961F090441WELATLSFPDSLALGALITRRVIVGCQFPDAASHRKNDSDTFRSRNGT*
Ga0079268_1017679Ga0079268_10176791F090441IESEDFIKGEVWELATLSFLDSLALGALITRRVIVGCQFPDAASYRKNDSDMFRSHSGT*
Ga0079268_1020784Ga0079268_10207842F001926VRHEDIPEINNPKIRFAVLEGDKLMKEVLNGGYNVHPVPPPKSEIKERITKRYERNRINIEKLLALGYTTSGDP*
Ga0079268_1276399Ga0079268_12763991F000481LIQKHEELIPTVQKTSLMVDLYWKCYAYGDELKPHIEFLDGIMLSSTRDIAPSCVENVDELIERQEKSLTQLDSKRGIVVDLIAKGKVILEHPDKPKFLEGNVKRIQDGWEDTKNKAQERLKLLNDTKEAWVGYANNNETIASEFEVAEEEIKKVKKRYALDDALSDLKKRQELYNK
Ga0079268_1284610Ga0079268_12846103F022892MNPIVNNIGVLKVILPPHKVAIQLKILIPVGTAIIIVAAVK*
Ga0079268_1292103Ga0079268_12921031F000237P*YYLYLVQLHVMFCHES*DTDSGESTIEDKSGTYVSWFYDAFLKEIQDA*F*SQFVFVYFAMHHFHASTVNYHFFER*NISELDEIRFYGVAPH*YFRPLMGLLTITPTHYEGLL*MGM*FGLLAALPLLNSFYNSGLRYVPVIPMQSSFVQTSAFILYMLSMYCAASMLPCGRYYYDPEGGYVGNP*VKFSYQYAYLYMA*
Ga0079268_1301824Ga0079268_13018241F098751LNLIDGFSHSQVEINLFHDTGIVLITGIFIFVAILGGSLVFNKLRDRKMLEDQALETI*
Ga0079268_1310690Ga0079268_13106901F005202QFKQMFNSYRSKRQASRRQGPRPAPRQTGDNLDLGDRLVEKLAEQKHHMEAKIGNMTCVMKELNVLDASNNIDVQAMKRDIQKYTMPSEWFKNKYEHLLDTCYEMATNLPADIAENSVVTGDSFGTVKLGEVKMFTKCCEKAKTKLCMHQDIKKKVESNFGPMEDILQETQLTEHEFFPLVMQLLHG
Ga0079268_1315763Ga0079268_13157632F042355MSSDLKKINKKNSGRKSNSQELKLVERLIKISRVSKVTKGG
Ga0079268_1324325Ga0079268_13243251F041786AEAFRHSLMTFGNKFSAGEVDDAFAEMKIDEGMIDAAHLKGLMVAK*
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