NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300006626

3300006626: Soil microbial communities from the Leymus chinensis steppe, China - after adding 17.5 g N m- 2, yr-1



Overview

Basic Information
IMG/M Taxon OID3300006626 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0117801 | Gp0125025 | Ga0101570
Sample NameSoil microbial communities from the Leymus chinensis steppe, China - after adding 17.5 g N m- 2, yr-1
Sequencing StatusPermanent Draft
Sequencing CenterChengdu Institute of Biology, Chinese Academy of Sciences
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size314721732
Sequencing Scaffolds33
Novel Protein Genes34
Associated Families32

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2
Not Available7
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae → Lichenibacterium → unclassified Lichenibacterium → Lichenibacterium sp. 6Y811
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Eremiobacterota → unclassified Candidatus Eremiobacteraeota → Candidatus Eremiobacteraeota bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → unclassified Geodermatophilus → Geodermatophilus sp. DSM 445111
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium → Sphingobium yanoikuyae1
All Organisms → Viruses → Predicted Viral1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From The Leymus Chinensis Steppe, China - Nitrogen Deposition
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The Leymus Chinensis Steppe, China - Nitrogen Deposition

Alternative Ecosystem Assignments
Environment Ontology (ENVO)grassland biome → land → fertilized soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
Locationthe Inner Mongolia Grassland Ecosystem Research Station (IMGERS), China
CoordinatesLat. (o)43.63Long. (o)116.7Alt. (m)N/ADepth (m).1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000230Metagenome / Metatranscriptome1517Y
F003605Metagenome / Metatranscriptome477Y
F004245Metagenome447Y
F005005Metagenome / Metatranscriptome415Y
F006607Metagenome / Metatranscriptome369Y
F012145Metagenome283Y
F014168Metagenome / Metatranscriptome265Y
F030746Metagenome / Metatranscriptome184Y
F031172Metagenome / Metatranscriptome183Y
F032371Metagenome / Metatranscriptome180Y
F033870Metagenome / Metatranscriptome176Y
F034918Metagenome / Metatranscriptome173Y
F035454Metagenome172Y
F038868Metagenome / Metatranscriptome165Y
F043376Metagenome / Metatranscriptome156Y
F049102Metagenome / Metatranscriptome147N
F051097Metagenome / Metatranscriptome144Y
F053270Metagenome / Metatranscriptome141Y
F061129Metagenome / Metatranscriptome132Y
F063005Metagenome / Metatranscriptome130Y
F066027Metagenome127Y
F067704Metagenome / Metatranscriptome125Y
F067705Metagenome / Metatranscriptome125Y
F072456Metagenome121Y
F072702Metagenome / Metatranscriptome121Y
F073822Metagenome / Metatranscriptome120Y
F074831Metagenome / Metatranscriptome119Y
F077506Metagenome / Metatranscriptome117Y
F087255Metagenome / Metatranscriptome110Y
F090625Metagenome / Metatranscriptome108Y
F094083Metagenome / Metatranscriptome106Y
F097858Metagenome / Metatranscriptome104Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0101570_10048292All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia625Open in IMG/M
Ga0101570_10051249All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales869Open in IMG/M
Ga0101570_10110299All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria808Open in IMG/M
Ga0101570_10168723Not Available742Open in IMG/M
Ga0101570_10232320All Organisms → cellular organisms → Bacteria510Open in IMG/M
Ga0101570_10244865All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria795Open in IMG/M
Ga0101570_10297573All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria681Open in IMG/M
Ga0101570_10304232Not Available500Open in IMG/M
Ga0101570_10306960All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales691Open in IMG/M
Ga0101570_10361432All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae → Lichenibacterium → unclassified Lichenibacterium → Lichenibacterium sp. 6Y81845Open in IMG/M
Ga0101570_10418750Not Available568Open in IMG/M
Ga0101570_10528698All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae618Open in IMG/M
Ga0101570_10546971All Organisms → cellular organisms → Bacteria507Open in IMG/M
Ga0101570_10551529All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae546Open in IMG/M
Ga0101570_10574599All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Eremiobacterota → unclassified Candidatus Eremiobacteraeota → Candidatus Eremiobacteraeota bacterium2305Open in IMG/M
Ga0101570_10586040All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → unclassified Geodermatophilus → Geodermatophilus sp. DSM 44511504Open in IMG/M
Ga0101570_10615362All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia689Open in IMG/M
Ga0101570_10626778Not Available686Open in IMG/M
Ga0101570_10628401All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia738Open in IMG/M
Ga0101570_10649086All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria525Open in IMG/M
Ga0101570_10713097All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium543Open in IMG/M
Ga0101570_10739941All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales631Open in IMG/M
Ga0101570_10798486All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales587Open in IMG/M
Ga0101570_10853464All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria571Open in IMG/M
Ga0101570_10924705All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella509Open in IMG/M
Ga0101570_10976371Not Available809Open in IMG/M
Ga0101570_11084105All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria703Open in IMG/M
Ga0101570_11400728Not Available518Open in IMG/M
Ga0101570_11419830All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium → Sphingobium yanoikuyae642Open in IMG/M
Ga0101570_11803300All Organisms → Viruses → Predicted Viral1432Open in IMG/M
Ga0101570_11914534Not Available562Open in IMG/M
Ga0101570_11918160All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria575Open in IMG/M
Ga0101570_12317915All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales921Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0101570_10048292Ga0101570_100482922F034918MNWDNLLVIGRDRDSFKVLVGRKIRERRHDERQLAEHCTTKHQLQARNSCVADARSYRVARRLPVPAAARSRWKALIS
Ga0101570_10051249Ga0101570_100512492F033870RGVLLQRVEQGIESSGLKNYCLYLVAKRLTFAGPMNTAALSEQLRLNPHEVEDNLQLMLKKDMVRQEGEAWVITDAGRAALVAANDSGGQVLEDIRGAIGASACDQLVAGMRDALAALRRAA*
Ga0101570_10110299Ga0101570_101102992F067705MRVKAIAVLVIVAVSAGLFLAMHQENRADAAAGNCYMATDGPSTPTICQ*
Ga0101570_10168723Ga0101570_101687232F067704MNVKTTHVEQLWQSPDGKRKIWEVSLKGDDGREYRLKTYSPKISQLGFSGEVKSYVNYRGERFVRQVLSAPRPSFGRDDSAIRAQWAIGQAINLASVKMDKEAITLPVIETYAKELFATVSRVKGEQISPELEREAEQYIKGFVQIPSAI*
Ga0101570_10232320Ga0101570_102323202F063005LLVFFVVQLALWPLAVFEVRRPLRELVREAGFSVLRRPLGFAGLGLALLLVNAVGVAAAILPFLSLTIAYSFLVSAHYALPKNPAREV*
Ga0101570_10244865Ga0101570_102448651F066027EIEWKPLPTPMWPERSVMADWSGLILEASFEQGVPTWKVQRRMGKNALPTLVASGTADSLKAAKAAALHVAETELRSSSQGQPAE*
Ga0101570_10297573Ga0101570_102975732F014168MSADRLRLCLIAALVVAAIVSVIGNKANSPWLGWVSFAVFLCAIVLYAAWRRTALQERRGRVFDREAKTDETRTRPDQ*
Ga0101570_10304232Ga0101570_103042322F049102MHTPDADYFRHQAATCLRLAQLCRDLEVARRLFGMAGEFKSKAAEMDAGLQTMTVPSIEPSCGPARD*
Ga0101570_10306960Ga0101570_103069602F043376MSKTATFHIRATKRVPRWSMTRYAAARPSTWLALHSAPHASPKPIVNATQSKPISQTCGHNNLIPEPRRLPHTPTTAIKSP*
Ga0101570_10361432Ga0101570_103614322F035454MVEQVGRAIAKADGARFEDDPAPFQKLALAALQPLARPSEVMVDAAYDAGRFAEHWAINSRREFRKAVRAMIQAALEGR*
Ga0101570_10418750Ga0101570_104187501F031172MGLMDNIKKAQEMAQQAAQGGANTANPSAGDVEYANLAMKLNQNGLPGTATINSVTESGEGSDPVNKAYDLAVSVELENGQSYDTTVHQYLTQDAVNAYQPGGRFQVQADPDDTSKVMLYGQA*
Ga0101570_10445030Ga0101570_104450301F000230MSEQAKKVKHENIPQWAQGLYYNSGLIKEVLVYYDDEAIYFEHKGKESGIVRFTFEMIEGLKIVEDEAEHDGSPQ*
Ga0101570_10528698Ga0101570_105286981F097858MSTRHDICAIERTAATAGSAATLILGSLLLLISP*
Ga0101570_10546971Ga0101570_105469711F012145MPKPPETTRTTPTRQIRPPPLSQHLREFASRPGAWVVLGRNVIPVVGIYVFCWSVAVAVFNYWFDGLTALAAIVAAMIPRAMRETQSKRDRATLVGNVVRGV
Ga0101570_10551529Ga0101570_105515291F051097FMAPQTDLPAVWDSYQNVVKNLRDKGLTEGITITSHYEDRTGEPYQTAWTINPLLLEGSGYSDYKGYEDEVQAQEDQARALEKIAEDIEELKSAMEHPPNGRVG*
Ga0101570_10574599Ga0101570_105745994F053270LANITEVPSKVYLRFAQQSDAQRLFTDKVIGGPPPRRETWPQRVTKWLSEQQAGRRVILIAEDQTGLLGMVQVVFAFPPGYQDAEAANGMDVAMMEGLRLRPGSPPEVGNRLVEEVQRIAGKRNVKTLTFLLPMNDNRALRQAKMWGFEEFRIMPEPDKMLAFFRKSID*
Ga0101570_10586040Ga0101570_105860401F006607HRGVLPSRFRRVDSAPVALGVITVTEPHDWPLEQPAEGTLRPWYFRATGYLMVLFRDPDEAQRAQRGLLQRKVPQEELRLYESEEILRIVARLQEERSIVAKAVAALVADPSVKEHFLDTARTGGAALWLVAATRDRADHLVGLLADYSYSFLRYYGDDGVADVERDP
Ga0101570_10615362Ga0101570_106153621F004245DVRDDWAWRSDVSVNNGLQLMRDLRLNLGADVRGDVWNRFDAFNTVGVGASASLRYRFGLGRRAPWVLFEDRFGYDRFHDTPQSGNDNVVNLRGGVAFTDRIALEGGYAFESFVAPNDFYDRQLHRADARVVFDVTSSLQLALGYSYQEGDVISYAVPPRPDIARFSVEREDEDEFGQPLRTAYKLLGRTHGLSFSAAYQLTKHASVQLGYEYAVTTHDPLEYEKHLVE
Ga0101570_10626778Ga0101570_106267781F077506LNYLKRHDFAVHGGDLVEWFVRAGEGIVVNDFTVLRDNEVAEIVEMLPGRIYSVDLFKAWEGVFFSEEQCIYLGVWHDNVHNLRSDGQTGLAIVGLWHVLCYWLQKAHYPDDMQDVPPSELAWHYIRKTERWVTANLRRNTVRRADVLSTISAQQGDALFLSPPARNSFRSADARIWMWEAWWQGNPYYNIEHSYRDSLFGARSSDENGYARAFSSVLSSAQEYPVVI
Ga0101570_10628401Ga0101570_106284012F072702ELIACRRKHLNTHYSGKRGKGDRFDHAKGNVKAADVLLDWRVERIVLLGKNVARCFGLRDVPFLAEIHTYGRRFLFFPHPTGTNRWWNERRNERRARQLLQRFLRGEKVPAGFRKSGPSRRSRLSRN*
Ga0101570_10649086Ga0101570_106490861F074831LLTYQLSGTITDAAGKPVQGAVVITRTQDRDFWTHSSASDANGHYTSFFAASDETSADPVSLAVGVALGSTAYGGNVGQNANFARLKSSTMNIQLGSGTSYTVQQPRSFTGAVYSGLVVGVAAGGRVIKPISETWPTANGAFSMTLPASVRGKTLTFWENQRQSFSRFTAAPGR
Ga0101570_10713097Ga0101570_107130971F030746GDPAGTVATCTAGLLVFSATLCWNKVEDQPQAPTLPTLPETARCSVVETDDPETGRREILGEILALSERDFGSALDNVLRSLTTSAALSDAVLETRAARVTPPASAPATTLQSLALDLRDAGFAVRFAPSWTPVSEGAVGLGILGAEQELQSFIDAHLSWRVP*
Ga0101570_10739941Ga0101570_107399411F033870MNVSMEAPRTPQHDLVAMTAALRGALMQRVEQGIQSSGLATYYAYLVAKRLMFADPQTAATLSEQLRQNPRVIEDTLCQMSGQGLATREGDAWHITDAGRNALVSANDTGTEVLNDIREAIGASACDQLVTGMRDALAALR
Ga0101570_10798486Ga0101570_107984862F087255MANLFREQVAVTYIDPDSNVIATSWDTSPLPRAGENVRIAGVPYLVERVGYDLPKDKIERIWIVLRPA*
Ga0101570_10853464Ga0101570_108534642F094083FIRSSPSVVLATANLRHKPLDDHAFDTMQHWRRMAESERGNAVHWYHHLRGIGDVGCCLTVDQGARGAVAHFTATAPHPRRVLPKPVVRLALSSWSYLKLAGLARIAEAHDVDLA*
Ga0101570_10924705Ga0101570_109247051F073822VSVATVLSTVGNDIKSFYTKLAADFQKAKQAWLIISSPQTRAVLLTVGSDAIKTVKDATAAASGKGLSLSLDEAVIADIKQLIADAETGDGVIQSDLKALGLIA*
Ga0101570_10976371Ga0101570_109763711F067704MNVTTINSEQVWQSSDGQRTIWEVTLKGDDDKEYKLKTYSSKIAQLGFKGEVRSYLNPRGERFVRQLPSTKPAFQRDDYAIRAQWAIGQAINLASVKMEKEAITLPVIEEYAKELFETVTRVKGDAPSEEESKAAEGYIKGFTSAPSLF*
Ga0101570_11084105Ga0101570_110841051F005005YTYKDELHPRLTGTIVVKGAPPTLTLAASRAYTTFGDDATLSGVVSDHRAGEQVTIFYQPYPQPNLIQRTVVVTTAGGAYSFLISPEVLTTYQAFWKGAYSAPTTVQVQPKLSIGRDVVWILHAAAGHTMAGRDVLFQRLNTATGQWVTLVKTMLNARSSARVTVRLPKGVNHLRLAMSVNEAGAGYLAGFSPILDWRER*
Ga0101570_11400728Ga0101570_114007281F072456CRNLPARMLRRTWWLIPGVALLAMGIGCGIAIRRDLSTVPPGQVGFDDMCGLQEYFDALEIKTSPPPRVVSALDLEGESGGKAVRGGKETFAFDSDFLLHHLRRVLHENWRRLPDKLDTADRVDVEVKWSEKAGAKRVVTDAPPR*
Ga0101570_11419830Ga0101570_114198301F032371MRVAVLLAFFVLAAPAAAQRQKLDTLTPAEAISRAAAASPKPVRALFQLKVANAAKSRGGYYLDSEKNFRSPSNLGVVIRASAMPGLTEKYGADLKSALVGKTIKVIGQVRRISIGKAKTATATEVEVTHAGQILSVS*
Ga0101570_11803300Ga0101570_118033002F003605MAVGDQATAAGYDLVPDTGEEGRVRWGAREINRTRDYIAAVLAMIPVGKTGFRNASGISSGTADPSGGTDGDIYFKIVS*
Ga0101570_11914534Ga0101570_119145341F061129VERYGASVWTPPHAVWRKIPNPATTDELPDGIEALELDGEPQQVVFFVPEHATLVTGDVLTGRDGVMHVFVDEADREPLLASLERIAELPIERVIVPHCETPIFVDGAARIRAAVAEARQS*
Ga0101570_11918160Ga0101570_119181602F038868MESHGNWPASARLPIPGNAEWVWWVVAAIVIAIVAAAADSVGAAQWVEFMKWTTAAYLISRGIAKASRVLEQ*
Ga0101570_12317915Ga0101570_123179151F090625MLLALTGLLIGLGAFGHSFMGRKALDAGLASLAIDMHTDKLIYLVWYFCGGCMLVFGVLVIRGAWMAMRGERGALFAPCTIGMFYLATGVTALSYMHEAFWSVFVVLGGLALALSAVLGFAP
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