NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300006562

3300006562: Marine microbial communities from the Black Sea in Odessa region - Od_2



Overview

Basic Information
IMG/M Taxon OID3300006562 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0117798 | Gp0124962 | Ga0101390
Sample NameMarine microbial communities from the Black Sea in Odessa region - Od_2
Sequencing StatusFinished
Sequencing CenterHellenic Centre for Marine Research (HCMR)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size31351919
Sequencing Scaffolds12
Novel Protein Genes13
Associated Families13

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria1
All Organisms → cellular organisms → Eukaryota2
All Organisms → cellular organisms → Bacteria2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae1
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameInvestigation Of Black Sea Water Bacterial Metagenome
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Investigation Of Black Sea Water Bacterial Metagenome

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine neritic zone → surface water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationIllichivsk, Odessa region, Ukraine
CoordinatesLat. (o)46.302094Long. (o)30.668915Alt. (m)N/ADepth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008422Metagenome / Metatranscriptome333Y
F015595Metagenome / Metatranscriptome253Y
F017555Metagenome / Metatranscriptome240Y
F021995Metagenome / Metatranscriptome216Y
F026012Metagenome / Metatranscriptome199Y
F026265Metagenome / Metatranscriptome198Y
F028043Metagenome / Metatranscriptome193N
F033025Metagenome / Metatranscriptome178Y
F066764Metagenome126Y
F070091Metagenome / Metatranscriptome123Y
F070191Metagenome / Metatranscriptome123N
F088867Metagenome / Metatranscriptome109N
F092018Metagenome107N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0101390_1000190Not Available1263Open in IMG/M
Ga0101390_1000337Not Available1134Open in IMG/M
Ga0101390_1000436All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria1065Open in IMG/M
Ga0101390_1000618All Organisms → cellular organisms → Eukaryota1002Open in IMG/M
Ga0101390_1001006All Organisms → cellular organisms → Bacteria898Open in IMG/M
Ga0101390_1001293All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae847Open in IMG/M
Ga0101390_1004081All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon641Open in IMG/M
Ga0101390_1004327All Organisms → cellular organisms → Bacteria631Open in IMG/M
Ga0101390_1004382All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi628Open in IMG/M
Ga0101390_1005214All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta598Open in IMG/M
Ga0101390_1007182All Organisms → cellular organisms → Eukaryota546Open in IMG/M
Ga0101390_1008942Not Available513Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0101390_1000190Ga0101390_10001901F033025MTFFNKEVELIIPPKKQNKTIKVKSLNGYDAIREKLDESNTLTAKTPVEQTTKPKTKISIGL*
Ga0101390_1000337Ga0101390_10003371F070191LSIEQSSMSGGTRGRSFTGLFAPPKCAASGGVIQTGCQLWMIKIIGRLTRPCSGWPLPFTAHSPRGSAWCSTSRKAETMLGRSFSGKTARGPRRRGACGKGRRSTCPRFLACYSNTNKDCIERYERGEVKRRFSTQPRRVGTLRGDPRPAARCGERDVFQSNDDEYKQARLLSKSHHHYSPRAAKLNNARRAELPRGTASSAMVSPTTNLRRGPQPALIAKDGGQRLGLNLAPCGLGGLNLRKA*
Ga0101390_1000436Ga0101390_10004362F017555MVQKIIDPNFHIRTFNVKCDKALSPLLKTILKSFNFKLYYYVIDDLLYLLKSNPDECDSILKILNSSVLFLQNNFHVNFFDIYLYEINIIERSKSNRFINEEPKNFQNSTYLNIKLAYQVKSIQKKFETIW*
Ga0101390_1000618Ga0101390_10006181F088867MMEEDEPLSSSEAPRAPALDTEEGLSTPVAGPETPFRPTSGMPGLTPTGAHVTALQFDEEQVLRGLFCVCDELQACCEHATGMLQML*
Ga0101390_1001006Ga0101390_10010062F028043MLILFTWANACEQEQVKPVDNKTIPVCEELQESTDEKPCKKPENINTVIKAIEKLGESGTLPK*
Ga0101390_1001293Ga0101390_10012933F008422MGMTYQKGDVFLDKNTHKLYIFDGNEWLEIVPTSVLKKPDWN*
Ga0101390_1002364Ga0101390_10023642F092018MILSIKKRVFELFLKMNFFLKIIFSAYNKKMSETTETDIKPTSKPTPNKQKIRLIFPYEQNPEFKKLGVKWDMEQKIWYYPSLDGELPDNLKPFKCYKIAINYDDKEYYKPILKSMRWDKNLKVWIVNQEDYTKFTLL*
Ga0101390_1004081Ga0101390_10040812F070091MDKKTRESIVETAKHFTIGYVQWVDAVSDSGWETEVKVDVHPCLSIGFIVDETEDAICLAAVISHDQSNSRIHIPKQWIKSIKKVRLDKFLDLRRKPSKPKVQKPKVESSSNGSEISLLNNSRF
Ga0101390_1004327Ga0101390_10043271F021995MFAVVDFDRQKSFFFTDFQSASDFIAQYSVISNTVVVDLSEQQPAVEKL*
Ga0101390_1004382Ga0101390_10043821F026265YDMAKELKVGKDQAKAALGVGVALRLEVRANVRGRAAGASELPGPHASASACSDDGVREAEKWLQTALDLGRTAARLHLAHLVFDTGPEDTALAHLQDYLSWCVERGRNRCAGCYQTRGEDAQMLTCGGCRVARFCSADHQKMASKSVASGGSLLEGRHKDVCGVLGKWRQQVVKDGMSPDVLRADLLAFLRQ*
Ga0101390_1005214Ga0101390_10052142F026012VRDDISYLLKSNPIERDFLLQALYSIVISLQNNLSINFFDMWIYEVYINKVSSHNKFMNEKSQNLEADEYITIKIAYGFNVSQEKK*
Ga0101390_1007182Ga0101390_10071821F015595VLNKIIPDLQLDLQGAGEAFEDVKQMGLSGEKPLGEVKTKAPNSDYHQIMPPVAARQAEVARDYLKRAARIDELNGHPPGTDGPMVTALKGYNGGQVLVFVMGAFAEMSGDVSRICDIIAHELARTHVSYYNDDAKRTKGMYRQRIQKAWGHTAHRGWARLLLDRARDLIIHGPAHRGAN
Ga0101390_1008942Ga0101390_10089422F066764LDNIRIAYEYEMGEYLEPENRRREKVELRNALVNAARPYGTHRQLAEMVGKTNHTTAIHITREHEVYYNYSPQYRRNYAVALDVVESFARRHQLLPRINGQGRSCSSYENEIETLNKTILSLQKRRDGFIESLDKKRKMAILHTESTI*
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