| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300006230 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0116840 | Gp0121734 | Ga0082390 |
| Sample Name | Marine sediment microbial communities, 15.1 km from oil contamination, ambient, Gulf of Mexico ? BC155 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Yale Center for Genome Analysis |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 40049693 |
| Sequencing Scaffolds | 9 |
| Novel Protein Genes | 12 |
| Associated Families | 8 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Atkinsviridae | 1 |
| Not Available | 8 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Sediment Microbial Communities From Different Distances From Oil Contamination, Gulf Of Mexico |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Sediment Microbial Communities From Different Distances From Oil Contamination, Gulf Of Mexico |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine benthic biome → marine benthic feature → marine sediment |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Sediment (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Gulf of Mexico | |||||||
| Coordinates | Lat. (o) | 28.3 | Long. (o) | -88.2 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000237 | Metagenome / Metatranscriptome | 1498 | Y |
| F000344 | Metagenome / Metatranscriptome | 1257 | Y |
| F014988 | Metagenome / Metatranscriptome | 258 | Y |
| F026908 | Metagenome / Metatranscriptome | 196 | Y |
| F030134 | Metagenome / Metatranscriptome | 186 | Y |
| F030135 | Metagenome / Metatranscriptome | 186 | Y |
| F060086 | Metagenome / Metatranscriptome | 133 | Y |
| F082867 | Metagenome / Metatranscriptome | 113 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0082390_114132 | All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Atkinsviridae | 3379 | Open in IMG/M |
| Ga0082390_119674 | Not Available | 933 | Open in IMG/M |
| Ga0082390_120464 | Not Available | 755 | Open in IMG/M |
| Ga0082390_120468 | Not Available | 725 | Open in IMG/M |
| Ga0082390_120469 | Not Available | 529 | Open in IMG/M |
| Ga0082390_122784 | Not Available | 642 | Open in IMG/M |
| Ga0082390_125275 | Not Available | 898 | Open in IMG/M |
| Ga0082390_128012 | Not Available | 533 | Open in IMG/M |
| Ga0082390_141923 | Not Available | 724 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0082390_114132 | Ga0082390_1141322 | F014988 | MSFSPTSPAVGAAITAFTSPTYTLATDVAPNINGKQYAVSALGGTQADVVVNSVSKPFTVTFFRPAQLRTLPQANPVTGVIKNVPMNTYKLITRKGAEPAANQNAIVAKITTVIDIPAGADTYEPEELKALLSCHFGIGWEQADGISDTVISGVL* |
| Ga0082390_117776 | Ga0082390_1177761 | F060086 | LLLLANLFGEDRKRQLISVNDLETPLLGDMADLLRK* |
| Ga0082390_119674 | Ga0082390_1196741 | F082867 | GSRSRRVHHINDINHNDTNITVQYRVVKPLTFSSNTLVLSVNPSLTDLSTTLATIYRQYRVTELSFTFQCSDAAGAYALAMQYVPQIGGTPSTLPTTLAEFEGPAVGYCETGRGREYTYRVPSHVLNAMGLNYYATRTGVTPIQDPDILTQGLMIFLTSTPATPIVAYMHVKFEFQTLEDPSFLAKLMHDDKEADTLVVPRAKADSLKSMTWNQL* |
| Ga0082390_120464 | Ga0082390_1204641 | F030135 | GFLRGPKNREELATLSSFTDIWHSTFVGRQFPDAILPGKEAIDLVAGPLN* |
| Ga0082390_120468 | Ga0082390_1204681 | F030135 | GPKNREELATLSSFTDIWHSTFAGCQFPDAILPGKEAFDLVAGSLN* |
| Ga0082390_120469 | Ga0082390_1204691 | F030135 | NREELATLSSFTDIWHSTFAGCQFPDAILPGREAFDLVAGPLS* |
| Ga0082390_122784 | Ga0082390_1227842 | F026908 | LVKTRNESHRCVLTWFVSRWRNHQPKWAKRPHSKFSGRKALDGPAMRPETPLAVENSVGEPAANTGRLMSAWERERGE |
| Ga0082390_125275 | Ga0082390_1252751 | F030134 | RTKIKKCKKDKIQPVLQRFKLRSCTFLIVEQTNFVYFYNTQEKIIQHRGSRHIYR* |
| Ga0082390_125481 | Ga0082390_1254811 | F000237 | CLSATHLSDLTLTIIANIY*SLFDNIYKTYYVVFTNKHLNTDQMTRIMIFHYFTP*YYLYLIQLHVLFCHES*DSDSGETTFEDKSGSYIS*FYDAFLKEIQDA*Y*TLLIFCYFWLHHANAHTVNFFFFER*NIAELDEIRFYGVAPH*YFRPLMGILVISPTHYEGLM*LALFFILLTFLPIIYNLYNNSNKHIPTIPMQNSLLQTFAFVIFVLSLLCIASILPCGRYYYEPEGGYVGNP*IKFSLQYIYLYMA*FL |
| Ga0082390_125482 | Ga0082390_1254821 | F000237 | YYLVFTNKHLNTDQMTRIMIFHYFTP*YYLYLIQLHVLFCHES*DSDSGETTFEDKSGSYIS*FYDAFLKEIQDA*Y*TLLIFCYFWLHHANAHTVNFFFFER*NIAELDEIRFYGVAPH*YFRPLMGILVISPTHYEGLM*LALFFILLTFLPIIYNLYNNSNKHIPTIPMQNSLLQTFAFVIFVLSLLCIASILPCGRYYYEPEGGYVGNP*IKFSLQYIYLYMA*FL |
| Ga0082390_128012 | Ga0082390_1280121 | F000344 | MRPRSTHAALSGVGEHPARKCESAKWCAIGKERVA |
| Ga0082390_141923 | Ga0082390_1419231 | F030135 | DFSEGLKDREELATLSSITDIGHSTFAGRQFPDAILPGREAVDLVAGPLN* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |