NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300005627

3300005627: Crenothrix polyspora biofilm communities from Wolfenbuettel waterworks, Germany



Overview

Basic Information
IMG/M Taxon OID3300005627 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0084224 | Gp0054464 | Ga0077107
Sample NameCrenothrix polyspora biofilm communities from Wolfenbuettel waterworks, Germany
Sequencing StatusDraft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size24508778
Sequencing Scaffolds5
Novel Protein Genes5
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Nitrospirae2
Not Available1
All Organisms → cellular organisms → Bacteria2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameCrenothrix Polyspora Biofilm Communities From Wolfenbuettel Waterworks, Germany
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Drinking Water → Unclassified → Crenothrix Polyspora → Crenothrix Polyspora Biofilm Communities From Wolfenbuettel Waterworks, Germany

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Surface (non-saline)

Location Information
LocationGermany: Wolfenb?ttel, Lower Saxony
CoordinatesLat. (o)52.149Long. (o)10.542Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007831Metagenome / Metatranscriptome344Y
F008161Metagenome / Metatranscriptome338Y
F018543Metagenome / Metatranscriptome234Y
F059300Metagenome / Metatranscriptome134Y
F064859Metagenome128Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0077107_103870All Organisms → cellular organisms → Bacteria → Nitrospirae837Open in IMG/M
Ga0077107_104844Not Available803Open in IMG/M
Ga0077107_108248All Organisms → cellular organisms → Bacteria824Open in IMG/M
Ga0077107_108348All Organisms → cellular organisms → Bacteria → Nitrospirae746Open in IMG/M
Ga0077107_112665All Organisms → cellular organisms → Bacteria823Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0077107_103870Ga0077107_1038701F008161METSQRDELLGTITWWGFHALLVWIGAWHFLSRNLTDGGLFVSDLFAGALLVATALSLLRLSVGCHFLRFVALTGILLVIYRVWEGKAELGNLTDVAIWAYTFYSFGPSSWRFSLYSPLGVFGKLKA*
Ga0077107_104844Ga0077107_1048441F007831MMILVAVMFLLPPVLGTLYLYVSGVFINRRTFQFVFYTLLAFFALTIGISTQFSYQGYDRLATTPVSLLPVLPEP*
Ga0077107_108248Ga0077107_1082483F018543MIETWSNQSAAANRRPAGQADGSDNLSAIVAADRAFPAAVAELGR*
Ga0077107_108348Ga0077107_1083482F059300MVGFTVGAGAGDVGFPICGLFVESAESISSLGDRRPGFVGSRDMGHEAACGERDVTTLRSFSLRHAKTTRLFCRGV*
Ga0077107_112665Ga0077107_1126651F064859MKRIVMLAAALVIALGNEASARLGNTEDQVAALFGKPTDAGEPDSDGITTNMYKNRTGEYLALVQF*
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