| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300004758 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0114441 | Gp0111480 | Ga0068410 |
| Sample Name | Marine sediment microbial communities from Formosa Ridge, offshore Taiwan - G2-3 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Beijing Genomics Institute (BGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 6645689 |
| Sequencing Scaffolds | 5 |
| Novel Protein Genes | 5 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria | 1 |
| Not Available | 3 |
| All Organisms → Viruses → Predicted Viral | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Metagenomics Analysis Of Sediments Collected From Formosa Ridge |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Cold Seeps → Sediment → Marine Sediment → Metagenomics Analysis Of Sediments Collected From Formosa Ridge |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine benthic biome → marine benthic feature → marine sediment |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Sediment (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | South China Sea, offshore SW Taiwan | |||||||
| Coordinates | Lat. (o) | 22.10811667 | Long. (o) | 119.29126667 | Alt. (m) | N/A | Depth (m) | 1162 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F021240 | Metagenome | 219 | Y |
| F028309 | Metagenome | 192 | Y |
| F040581 | Metagenome / Metatranscriptome | 161 | N |
| F104423 | Metagenome | 100 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0068410_101254 | All Organisms → cellular organisms → Bacteria | 3313 | Open in IMG/M |
| Ga0068410_102555 | Not Available | 527 | Open in IMG/M |
| Ga0068410_103184 | Not Available | 1015 | Open in IMG/M |
| Ga0068410_103872 | All Organisms → Viruses → Predicted Viral | 1000 | Open in IMG/M |
| Ga0068410_109908 | Not Available | 789 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0068410_101254 | Ga0068410_1012542 | F104423 | VEVHRIRKAKSLYHRERYHILLEIEKDRWLEIESLNGVTYDSIQTFLKSEKETGIRVVGFTDKSFQWGTIKDWNHSGIIKNLKTKK* |
| Ga0068410_102555 | Ga0068410_1025551 | F028309 | PFTHDWRPGDRIVSIAVRESVADTGLGTIQRVLLDKAVVLWDDGEQSEERLKDLIIAGFDESKLVKHADNFGHRGQDEWWTGHSNLEEDISSELALNDRLIINSMLISGIPLTIDKAKGLKWGNFINEGFAQGS* |
| Ga0068410_103184 | Ga0068410_1031841 | F021240 | MLDFNNSKSRIEIIDQEDRALLRSNPSAWSMPEDGKEHIFYHMLLSSPSSFGSKAKNLLNWCEAPMKAKQAQSSAPVGHMSGLSIR |
| Ga0068410_103872 | Ga0068410_1038723 | F040581 | MEFLENFNGIKFMGNGNVYNGYLKQEQTWKEYREWALKNIYE* |
| Ga0068410_109908 | Ga0068410_1099081 | F021240 | MLDFNNSQSKIVNIDREGKALQRCNLSARPMPEDGQGHVLSHMLLPSRSSFGYKAINLLSWCEAPIRVKQAKSSAPVGHMSVLSIR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |