| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300004623 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0055735 | Gp0103150 | Ga0058869 |
| Sample Name | Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - TNR Reactor, Time I- 292min-Aaerobic_ RNA (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 314376074 |
| Sequencing Scaffolds | 24 |
| Novel Protein Genes | 25 |
| Associated Families | 25 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Postciliodesmatophora → Heterotrichea → Heterotrichida | 1 |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea | 8 |
| Not Available | 7 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia | 1 |
| All Organisms → cellular organisms → Eukaryota | 2 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium oral taxon 876 | 1 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingopyxis → Sphingopyxis alaskensis | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Wastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa |
| Type | Engineered |
| Taxonomy | Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Bioreactor → Wastewater Treatment → Wastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.076217 | Long. (o) | -89.411742 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000736 | Metagenome / Metatranscriptome | 914 | Y |
| F001542 | Metagenome / Metatranscriptome | 673 | Y |
| F001602 | Metagenome / Metatranscriptome | 664 | Y |
| F004521 | Metagenome / Metatranscriptome | 434 | Y |
| F008678 | Metagenome / Metatranscriptome | 329 | Y |
| F010228 | Metagenome / Metatranscriptome | 306 | Y |
| F010229 | Metagenome / Metatranscriptome | 306 | Y |
| F013351 | Metagenome / Metatranscriptome | 272 | Y |
| F017164 | Metagenome / Metatranscriptome | 242 | Y |
| F018307 | Metagenome / Metatranscriptome | 235 | Y |
| F018543 | Metagenome / Metatranscriptome | 234 | Y |
| F032545 | Metagenome / Metatranscriptome | 179 | Y |
| F033437 | Metagenome / Metatranscriptome | 177 | Y |
| F038054 | Metagenome / Metatranscriptome | 166 | Y |
| F040700 | Metagenome / Metatranscriptome | 161 | Y |
| F050470 | Metagenome / Metatranscriptome | 145 | Y |
| F051950 | Metagenome / Metatranscriptome | 143 | Y |
| F051952 | Metatranscriptome | 143 | N |
| F054015 | Metagenome / Metatranscriptome | 140 | Y |
| F054605 | Metagenome / Metatranscriptome | 139 | Y |
| F074446 | Metagenome / Metatranscriptome | 119 | Y |
| F077495 | Metagenome / Metatranscriptome | 117 | Y |
| F078281 | Metagenome / Metatranscriptome | 116 | N |
| F084936 | Metagenome / Metatranscriptome | 111 | N |
| F089746 | Metagenome / Metatranscriptome | 108 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0058869_1000806 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Postciliodesmatophora → Heterotrichea → Heterotrichida | 739 | Open in IMG/M |
| Ga0058869_1001769 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea | 1300 | Open in IMG/M |
| Ga0058869_1004899 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea | 632 | Open in IMG/M |
| Ga0058869_1048579 | Not Available | 562 | Open in IMG/M |
| Ga0058869_1068184 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia | 560 | Open in IMG/M |
| Ga0058869_1181276 | All Organisms → cellular organisms → Eukaryota | 579 | Open in IMG/M |
| Ga0058869_1230892 | Not Available | 623 | Open in IMG/M |
| Ga0058869_1248068 | Not Available | 554 | Open in IMG/M |
| Ga0058869_1248636 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium oral taxon 876 | 523 | Open in IMG/M |
| Ga0058869_1278080 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium | 546 | Open in IMG/M |
| Ga0058869_1289301 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea | 743 | Open in IMG/M |
| Ga0058869_1314581 | Not Available | 749 | Open in IMG/M |
| Ga0058869_1317365 | Not Available | 618 | Open in IMG/M |
| Ga0058869_1350462 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea | 681 | Open in IMG/M |
| Ga0058869_1387605 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea | 766 | Open in IMG/M |
| Ga0058869_1434720 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea | 871 | Open in IMG/M |
| Ga0058869_1445778 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 964 | Open in IMG/M |
| Ga0058869_1463515 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea | 842 | Open in IMG/M |
| Ga0058869_1474847 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 883 | Open in IMG/M |
| Ga0058869_1488549 | Not Available | 536 | Open in IMG/M |
| Ga0058869_1493387 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingopyxis → Sphingopyxis alaskensis | 719 | Open in IMG/M |
| Ga0058869_1497187 | Not Available | 687 | Open in IMG/M |
| Ga0058869_1507938 | All Organisms → cellular organisms → Eukaryota | 507 | Open in IMG/M |
| Ga0058869_1517534 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea | 647 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0058869_1000806 | Ga0058869_10008061 | F001602 | GIIFGVVLGLIITFSFQTENKCHPQCSWKCDDPHCPAICDPVCEPPKCHTSCAEPKNAICDVKCEKPECEIKCPDKGCEMFDCPKCVTVCKQPHCVTHCQAPKPECEAVCEEPRCDWKCHKPACPKPKCELVCENPNCVPKVECCPCAMGAPRVSTPFPFFKETEGNQGCCGCKNNQARLLSDIDARTRTSRTINDFGTHVVTSENSERIDNFARPKQIGDSYFEGNGKAVKDFETRPLTYSVK* |
| Ga0058869_1001769 | Ga0058869_10017691 | F017164 | LPRDFYSLPIFSFFLYLIYVFFVYHLIVYIQSMAANGNVQFNSMPKHMSDSWIVIDDHDESDFVVIENEHAKQLTPVPLIPSPKVSPQTKRPLAQSNNKPTNISQPPTSTSGGKHKKRKWKVLYSLPSTSIKTNVDDSNLDSFVMDQHAQLYDKRDLFSNQQHIVKVK* |
| Ga0058869_1004899 | Ga0058869_10048991 | F074446 | RLKFVMVEDTKLEAKTPLLSANLSYPTRPYVAQMPFFMRLIGHYTDSGRPMPQSGSLEAETALQDQRLVYNDDTQPIEVVNPFVRWHRRWYRSKAVDPSPTVGAYYTPFNMALEPWAMGLGDMGCAKIFKQYRMCTHMVPSNRRYLCEDEKDDFKECIFAQKRYLRQQYMYQHRVKKNLPFPEDPLIDGYNWHSFKYLN* |
| Ga0058869_1048579 | Ga0058869_10485791 | F051952 | PRQTIAPDHFTTTALSENSWRILGKVTENEVTLVRYFLSKIVYTDEVVTLEETCILFLSFEKMVQKMSQHEAYRAKYGSEVFTFRAVFTSLEDVVSANPQDRLNRMREVYGFYRGKLFSRRYYFSVRGQLTRELRLRVLTRFPKKHKPKAFVGKGYGDHGTAKDMAYDGSPSWQEVAMADTNLGTS |
| Ga0058869_1068184 | Ga0058869_10681841 | F033437 | VGVGVRHALFPVGTRLDALAFAGGVLPDATLRGMRMYRSHGGTVLTVTGRDLSSEASAPGSDAPCRERLAGRGADTPATCTIRVGTFTTGTAPACDRPLAPRYGSDLLPLRLLFAFAAG* |
| Ga0058869_1181276 | Ga0058869_11812761 | F000736 | VTNRRSNMSEDRAARRNRGGTAAAGDGVVGIPDALLQELIQAFTYIADPSGAGDVTTVKLTEDRLDRLVRSLGIKTSARDMMRDAGGKELDFIGFRDMMIARIKQSDSEENIRNNFQKFENTKGSGKISARELKTALKKMGRVPLRDSEIEEFLRIPGIESDGFIYYEKFMLEFFGEKSKSAD* |
| Ga0058869_1214323 | Ga0058869_12143231 | F078281 | GDKLILTGGEKDYIESQNCTYMFKFKRYEGVEEGFSAKVFRKADMLYRRRAHSLIYFNDYLYAISGVDKLEMIKKCEKYDIFNDKWIEIPEINFHRQNAALAVHNQRYLYAFSGYDGFKNVDNFERLDFLNEDAGWEMFELKSVAKEVDVVDIRKNRMGVINLDFDRMLIFGGERNNKEYKEAYIYEFYENKFYQFSDLVRTSNFIM |
| Ga0058869_1230892 | Ga0058869_12308921 | F051950 | STEATYQLNFNVGFSTTRSDVLVHLSQ*QY***F*FAFL*CFYYLFSARVVRYRSLKMRPKIVTSFRPHGK*GDFLAAIIPAI*CLNILSNSNFILRLIE*QNEASLFTVRVRARQ*YWVYKFELKNFTDILTAPKNVGYNR*TVNTFGDLQVAEDYLYMLQLRSQNN*VKSY*TEVLKTAGDVKKNHIVAPQEQLSLEITNQAKTN |
| Ga0058869_1248068 | Ga0058869_12480681 | F084936 | PHKMLVLLFLVALAIAAPVKPNFSEDFTAEAIYTIRRGRDHPRSFHGQWFHDGTAKRERFDVEADMVGRVDLYKFWNNTKGGLEYEDIKSHQTCHHRPFVQPYHGIFDFVAGSHYAATCDGGKGARWTATIPGAFELDLCASVDGTTPYWVERKHLVEHRLEVTVRFHEFKAGRPANSLFVIPN |
| Ga0058869_1248636 | Ga0058869_12486361 | F038054 | HKTKPMYSSGQPNYFNAILNLIQGRSTTLATLWGMFWQAVYALAGCVIGAAVLGNYGALIGTVIGAWLGFKAVNPYHSLVSQLNELNEHQRQNLTDEIRRTVGSSSIDNLIRYATNGDGRQLLFDIAQRYLTGNQQQQNNNAGFFSRFFS* |
| Ga0058869_1278080 | Ga0058869_12780801 | F013351 | PSGPAVDVTVEKPTRKTSLINLSVEEENLAVIPFAVLERRVGKRIGKIEIRGRKTLPDGTDASVLWQVQGNADLGLPTEQDLDIFVALGVLTYRNNFAKTVTFTGRELARILNISRVHGKFYQRLKLAMDRFIPLRFRALTAADRQEEVKWLNVFQEFSCFVDHSTGRFTGSVTWTDKVIQA |
| Ga0058869_1289301 | Ga0058869_12893011 | F001542 | QLNHYPIRTMAVVDLLNRRLSFVAAVFAFLGVIVGVVALATNYWTVINFTVPGTAAFTSNGTVLERGSVNFTWNGLFYQCTAGVDECLTRFWATTFLLCLLGLIFLLVGGIFIVWDIFQITDRRFAIPFLFFISSVLLTAGIFDYGSWAPLNYHSSRLMISAVVFAYSGLPITAFIAGRYSTFDRFVVTTATNGN* |
| Ga0058869_1314581 | Ga0058869_13145811 | F040700 | FTISVTPDVMAACDLGSLDQQYLNLLDEVAAGGPDGSGGLMLQTAGGAQQMRFSNGGPAQ |
| Ga0058869_1317365 | Ga0058869_13173651 | F077495 | HTYTNSLNKNMYSNRNIILLIGLTLAILLLSCTVKADTVDDEQHLVANTDEDNSISNEVDDELEFYRRASLRPVALYQRASLRPFAGKRASLRPFAGKRASLRPFAGKRASLRPVNYMGKRKRRSLMYVDSE* |
| Ga0058869_1350462 | Ga0058869_13504621 | F010229 | HHQVKSVVFLSVKIMLPILRSRVSLTRVITQTLAAQRQRDAFRVPTQNSSAVAPLTDEQRAFNLKIWPGVPETVRPTPIDYCPIDPVEYDKQTNRFSSQVSMWKWLSLLVAIPAVALLTYINLILPQNHTRPEFKDWDHLRPRMKWPIKDGQHSPFHSKWFNAIHFDAKGYETTDAEFEKQFHHGHGSKH* |
| Ga0058869_1387605 | Ga0058869_13876051 | F054605 | SFSTLFVIVVASFILLTKTNGISGQAASSDDSVRSNWLSDAHRNRVELFKKWLGNKPIPHSIHDKSQQSPYNILHPEQKFKGCTDPSEPFQCPESEKCIALQFICDGHPGDCPRNTDENEETCIAAKRPAKDNIEKFLQAEYTLHGPKLFTFLFGHKISKSIEQNNLFWFDTLASAFSVAKTIRNFAEKTHMSPEDLAHFQNVVQTIHDGQLEEIPMYAQEAVNQGLASLIEKLYESGFMDQ* |
| Ga0058869_1434720 | Ga0058869_14347202 | F004521 | RLFRIASTCVELSQFVQFHRQMILF*FSLEYVPNVGAPRSVYRASYVRPATVGYRRPLPPPVVPAGRGPGGAGLLAAILGPIGGLTGCLCCLNTIGVWGLFITAIPLTVYLSRWVSAYKNRNGLNGAGELLAPQLLLCVLLVCSFLFTFMRRS* |
| Ga0058869_1445778 | Ga0058869_14457782 | F050470 | VGLAARGARNLTGKIEKIEDQEALAQVRRQARRVVFKAFLAAIPLTLIAFALPQLW* |
| Ga0058869_1463515 | Ga0058869_14635152 | F008678 | TTVSIYFQIYSQTNSIQIIMTALRVFPFIGAAVAIGALVLGIIGVSTTYWFSNAAGHEGLWQKCPLGICVRTDGGRTAAIALAAVIAIGVGALLAVFSGLARQKSDAGNNLARLAGIVSVILLFSSGVLIAAALYTFIGIKNATGYSFTVMGIAQFLSFLAAMLVAHWMGHSFTVIN* |
| Ga0058869_1474847 | Ga0058869_14748472 | F018543 | MMWANQSAAANRRPAGQSDGSDNLAATVAADRAFPAAVAELDRSAK* |
| Ga0058869_1488549 | Ga0058869_14885491 | F018307 | RSKPIQPSSSLNRIMQTKLIFLAGLLAVLFLFHFNTVQSTILINSEEQWDDISSEDSSEFDKRLASAKFASGLGKRLASAKFASGLGKRLASAKFASGLGKRLASAKFASGLGKRLASAKFASGLGK* |
| Ga0058869_1493387 | Ga0058869_14933871 | F010228 | MPYSSNSSSSTSSTARTLEFELQKNGPYILAGLGVGGGLLFLANRNLPAISTPILASAADRVAYALRWTGLEGISMVTAVWCVIGVRAKYGIEPTSTSEGGNTPLQITQRILTNTTESFLAFTAAKLALASVLEPTNLRLIPALSGLFILGRYTFDAAINHPARTFGYTINAVATFSAYGLFLYKLFQKRESIDVVRSYR |
| Ga0058869_1497187 | Ga0058869_14971871 | F054015 | LLLCTSTVHATLAVQRKQDLPNEIRPTAGQSERMDWEGHEISAGSVKTFRCVGDVEMNTAGL* |
| Ga0058869_1507938 | Ga0058869_15079381 | F089746 | MHFAGIASLLVVCFVMYTQQAALSAPSSAEEYSLYKRRIDAHSRASIPLFRGSNLGIFVRKRPFPLVPEHVIFRRKEIRSNTDNDNDLAEYLSNDDKFQRRFDDYSENPGPMFG** |
| Ga0058869_1517534 | Ga0058869_15175342 | F032545 | KKKETMLGGFMKITLSVSVLCLFINLVCQASIADALPTLEADVNMVKTNDDASSLFDNNDHTGSNKQQLRNAKRIKAILENRLKRFRMLDQDEFQAMLTSLSQQAAEEQSKSSDAIDALGGMQLANYWSPV* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |