Sample 3300004459

Basic Information
IMG/M Taxon OID	3300004459 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111382 \| Gp0110217 \| Ga0065201
Sample Name	Marine microbial communities from Galveston Bay (MSEDA12C- fraction 11)
Sequencing Status	Permanent Draft
Sequencing Center	Shell Corporation
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300004459 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0111382 | Gp0110217 | Ga0065201

Sample Name

Marine microbial communities from Galveston Bay (MSEDA12C- fraction 11)

Sequencing Status

Permanent Draft

Sequencing Center

Shell Corporation

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	168394860
Sequencing Scaffolds	30
Novel Protein Genes	36
Associated Families	25

Dataset Contents

Total Genome Size

168394860

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	12
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium ADurb.Bin212	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium 4484_190.2	1
All Organisms → Viruses → unclassified viruses → Virus sp.	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	1
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Archaea	3
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	3

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium ADurb.Bin212

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

All Organisms → Viruses → unclassified viruses → Virus sp.

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Archaea

All Organisms → Viruses → unclassified viruses → Circular genetic element sp.

Ecosystem Assignment (GOLD)
Name	Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations
Type	Environmental
Taxonomy	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Ecosystem Assignment (GOLD)

Name

Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Type

Environmental

Taxonomy

Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine benthic biome → marine benthic feature → marine sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine benthic biome → marine benthic feature → marine sediment

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location	Galveston Bay, USA
Coordinates	Lat. (^o)	29.5	Long. (^o)	-94.76	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Galveston Bay, USA

Coordinates

Lat. (^o)

29.5

Long. (^o)

-94.76

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000713	Metagenome / Metatranscriptome	925	Y
F000754	Metagenome / Metatranscriptome	906	Y
F005882	Metagenome / Metatranscriptome	387	Y
F006008	Metagenome / Metatranscriptome	384	Y
F008068	Metagenome / Metatranscriptome	339	Y
F009657	Metagenome / Metatranscriptome	315	Y
F011939	Metagenome / Metatranscriptome	285	Y
F020468	Metagenome / Metatranscriptome	224	Y
F024682	Metagenome / Metatranscriptome	205	Y
F030440	Metagenome / Metatranscriptome	185	N
F031307	Metagenome	183	Y
F036103	Metagenome / Metatranscriptome	170	Y
F037999	Metagenome / Metatranscriptome	167	Y
F042645	Metagenome / Metatranscriptome	158	Y
F042907	Metagenome / Metatranscriptome	157	Y
F047065	Metagenome / Metatranscriptome	150	Y
F054877	Metagenome / Metatranscriptome	139	Y
F057206	Metagenome / Metatranscriptome	136	Y
F058965	Metagenome / Metatranscriptome	134	Y
F059980	Metagenome / Metatranscriptome	133	Y
F085724	Metagenome	111	Y
F085858	Metagenome / Metatranscriptome	111	Y
F094909	Metagenome	105	Y
F097383	Metagenome / Metatranscriptome	104	Y
F099975	Metagenome / Metatranscriptome	103	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0065201_1592537	Not Available	509	Open in IMG/M
Ga0065201_1598486	Not Available	541	Open in IMG/M
Ga0065201_1598866	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	544	Open in IMG/M
Ga0065201_1601045	Not Available	558	Open in IMG/M
Ga0065201_1602566	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	568	Open in IMG/M
Ga0065201_1609959	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium ADurb.Bin212	630	Open in IMG/M
Ga0065201_1611709	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	648	Open in IMG/M
Ga0065201_1612142	Not Available	653	Open in IMG/M
Ga0065201_1615835	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	698	Open in IMG/M
Ga0065201_1619026	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium 4484_190.2	743	Open in IMG/M
Ga0065201_1619279	All Organisms → Viruses → unclassified viruses → Virus sp.	747	Open in IMG/M
Ga0065201_1621693	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	790	Open in IMG/M
Ga0065201_1625521	All Organisms → cellular organisms → Bacteria	880	Open in IMG/M
Ga0065201_1626937	All Organisms → cellular organisms → Archaea	920	Open in IMG/M
Ga0065201_1630899	All Organisms → cellular organisms → Bacteria	1077	Open in IMG/M
Ga0065201_1632001	All Organisms → cellular organisms → Archaea	1141	Open in IMG/M
Ga0065201_1633245	Not Available	1227	Open in IMG/M
Ga0065201_1635120	Not Available	1399	Open in IMG/M
Ga0065201_1635230	Not Available	1412	Open in IMG/M
Ga0065201_1637703	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	1847	Open in IMG/M
Ga0065201_1637820	Not Available	1879	Open in IMG/M
Ga0065201_1637890	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	1903	Open in IMG/M
Ga0065201_1638692	Not Available	2194	Open in IMG/M
Ga0065201_1638706	Not Available	2201	Open in IMG/M
Ga0065201_1638742	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	2217	Open in IMG/M
Ga0065201_1638753	Not Available	2221	Open in IMG/M
Ga0065201_1638795	Not Available	2238	Open in IMG/M
Ga0065201_1638857	All Organisms → Viruses → unclassified viruses → Virus sp.	2266	Open in IMG/M
Ga0065201_1640495	All Organisms → cellular organisms → Archaea	3756	Open in IMG/M
Ga0065201_1640914	All Organisms → cellular organisms → Bacteria	4876	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0065201_1592537	Ga0065201_15925371	F047065	MTNLLNKFSKAAKLVSSSKTHMWECVYGAYVDHLDDISTDSLPEEIQIFYDSIKLRITSVEAFGHIDNDEASYIANDIMYIADVISSGLRKP*
Ga0065201_1598486	Ga0065201_15984861	F031307	MSKIRTYFGFKNGKLVSVLQSVKGEMKKALDCNYYITEPQNVEKQIEKWKKENSE*
Ga0065201_1598866	Ga0065201_15988661	F085724	IKRREKMKTMSAILMVLGMTAVYSPESIIPKYFIDEKAQGEYFIYDSKQLVVPKYIVKPEPRGRGYRVYETGKPVLPVYRIERKDALQ*
Ga0065201_1601045	Ga0065201_16010451	F054877	NLRVLACYRPMNTDDLDSELINLVGAEAEFRYHKFVDEDDTPYSNQWVLTTEDQRFGDYWFPEYDLEIRQEKLSH*
Ga0065201_1602566	Ga0065201_16025662	F059980	KKSPHLMEEACKMGLSGGFEQGKPETALPELKRLIPVNTKRVNPQNKF*
Ga0065201_1609959	Ga0065201_16099591	F085858	MDMKEFKEVVKLKIIPTTFVFRCTLCGFEMTNYDRHFGLIKMNEHIISNHSTEVNSLGKEDLYSRKPEIVLDRF*
Ga0065201_1610613	Ga0065201_16106131	F037999	EMPMAERVKFIRNDPVELIEYVRKESHVVWKAVEVFIRRENDEGRDALIEGVAVLPELVSQLKDIPHRVVFIGNQGEDHKENIKKFVEENEYDWMRGVSDQYIGAFAVFVKRMSAYIEQEAKRYGFEYIEMDKELFGDVTQGVMKSLGWSAR*
Ga0065201_1611709	Ga0065201_16117091	F099975	FFCKIKKSKGLRGDVREYLAQMIPQADVEMVKKSHLWMETR*
Ga0065201_1612142	Ga0065201_16121421	F011939	MPRLTLKLVEDTLRKEVEKLDKRVQVVGVNQSKKKDSFRVTLLKDGRTGGADLKKDLLNQFLSQEGKGGALRKALGKAVSRLSIMYRM*
Ga0065201_1615835	Ga0065201_16158352	F036103	LKKLSYIILALGIATCLIGAYIMAFGEPIVGPDHTGIATIIGITGIGTIATANTTLLGRKREANRQ*
Ga0065201_1619026	Ga0065201_16190261	F042907	MTDEMRHEAEEKRFNDLRDEPCIVCGEPYLYVMGSYAPEEPKRSNSRKDKAPVLYYTLCRTCFNHGRIPFALIESAYKSKFGQKAA*
Ga0065201_1619279	Ga0065201_16192792	F000754	SGNVTMDFKVNNTEFSSDVAVSEKVSGEAFGWNNTGYVLNDMITTGAERNRPVITFTNNDASSVDVEVAIFIGG*
Ga0065201_1621693	Ga0065201_16216931	F042645	MARITDLDILELRQFFEEALSRAQQTDKRQKMRMRRKIRDEIYLLLTWEKPTPTGIMNRWEERLQDVFNIMPFGFKEDLQKMLVDKMANPFKFRKVK*
Ga0065201_1625521	Ga0065201_16255211	F008068	MDEIIVAGEPCLVICSPLIPRTMLCNALLQPLLSRLKSAEEFVAFVSEPCIAPPGLDVVLVTAFWPRCVFDQAREGDDSRLVQTIKPQHLMLVERELYMKLTKKRCLFGDFLDSLLLHNEDKRKVFGLLSKVRSWIRENKSYGLFFLTEVRGMEDVIDQATSIFEIVVNAQVETKGDEPLLSFIIIKHPHIAEINKRIEAVFEKG*
Ga0065201_1626937	Ga0065201_16269372	F009657	MKEYEILFDTGTCRKLVAQINGMTKEGWEAKSIGGLGAPTGVSGVYVLMEREITKPA*
Ga0065201_1630899	Ga0065201_16308992	F011939	MPKITVELIEETLRKEVRKIDKSVQVVAVEQSKKTDFYRVTLIKDGKSGSAELKKDVIEQYLSREGKSGELKRALGKAVSHLSIRYQR*
Ga0065201_1632001	Ga0065201_16320012	F024682	MDAEDELISKLKTEIGKNLPPMVAGMAENMLDKNKEVIISWLKDNKNLVKEVIEK*
Ga0065201_1633245	Ga0065201_16332451	F006008	MPLVKKNISVAAGATSDQILVGTPYEYVGPNTRLVVAAAESTG
Ga0065201_1633245	Ga0065201_16332453	F097383	MDIYTAFWVSFACNWAVFGMSLYAWARVARFEKSLKGMDWQAVADITGDIGAVKRSIQRLNNRLNGLEKTSSTPDALAELALLHQQQQANVTPIQQNRVTGG*
Ga0065201_1635120	Ga0065201_16351201	F057206	MNYVIYGLIFASILNIIGLYIAIARVAEFRKSVHGLDWEAVATLLGDVATVKRSITRLNGRLNGMDNATPQFDWKE
Ga0065201_1635120	Ga0065201_16351203	F020468	MPLVKKHISLAAGATSDQILAGTTYEYVGPGTRLVIAAAAQDATGSLAQGVDSETVMNFQVNNAEFARDANVSLAGGGEPVGWKGGYVMNDMVTTAAERNRPIVTFTNNSAGTREIDVAIFIGG*
Ga0065201_1635230	Ga0065201_16352301	F057206	MNYVIYGLIFASILNIIGLYIAIARIAEFRKSVHGLDWEAVATLLGDVATVKRSITRLNGRLNGMDNATPQFDWKE
Ga0065201_1635230	Ga0065201_16352303	F020468	MPLVKKHISLAAGATSEQILAGTTYEYVGPGTRLVIAAAAQDATGSLAQGVDSETVMNFQVNNAEFARDANVSLAGGGEPVGWKGGYVMNDMVTTAAERNRPIVTFTNNSAATREIDVAIFIGG*
Ga0065201_1637703	Ga0065201_16377032	F000713	MPLVKKNITLAAGATSDQILQGTTYEYVDPGTRIVVAAAESTGTYSGNLVMNFTVNNAEFARDVAVSEKVSGEAFGWNNTGYVLNDMVTTGQVRNRPVVTFTNNDASSVDLEVAIFIGG*
Ga0065201_1637820	Ga0065201_16378202	F000713	MPLVKKNITLAAGATSDQILQGTTYEYVDPGTRLVVAAAESTGTYSGNVVMNFTVNNAEFSRDVAVSEKVSGEAFGWNNTGYVLNDMVTTGQVRNRPVVTFTNNDASSVDIEVAIFIGG*
Ga0065201_1637890	Ga0065201_16378903	F058965	MAFLGDFGKIFLGGARTGDVVTTLTGNPIIGASAQRGADLIGRIPSRGGTQQGQSVAVSQATQTTPQENQQSGTGGSQNVIIGLSDMGGGGFENVYSSQRPSMQAQNVGLPAIAGGAMAAGRGLYGLLFGGAAIAAPMIIDAFTGKPKKLRVTRKLQRDVKNAVMLLGIETVASQLGVEPEIVVYIMTKKIRNDGQYVTKAAVRKTRQTVRKMRTMCDLYDDLRPAAKRSPVRRRAATTKVTQIRN*
Ga0065201_1638692	Ga0065201_16386923	F020468	MPLVKKDITIAAGATSDQILAGTTYEYVGPGTRLIIAATAGDGAGGIAADDDTEVTMNFNVNNAEFARDASVSPAISGEAFGWKGNYVMNDMVTTAAERNRPIITFTNNSAAARNVKVAVFIGG*
Ga0065201_1638706	Ga0065201_16387062	F020468	MPLVKKHISLAAGATSEQILSGTTYEYVGPGTRLIVAAQAGDGSGTLTLDADTETVMNFQVNNAEFARDVTVSVAGGGEPFGWKGGYVMNDMVTTAAERNRPIITFTNNSSATREIDVAVFISG*
Ga0065201_1638742	Ga0065201_16387423	F000713	MPLVKKNLTLAAGATSDQILQGTTYEYVDPGTNIVVAAAESTGTYSGNVTMNFTVNNSEFAKDAAISEKVSGEAFGWNNTGYVLNNMTTTGQVRNRPVITFTNNDASSVDIEVAIFIGG*
Ga0065201_1638753	Ga0065201_16387531	F030440	MEFAIYTLIACNLLAFCGFAYTRARLGKLERALGDLDWEALAGLVGDVAVLKRTIQKLNMRLNGMETADPMAALARLPQLQQNVTQMAAVKKRGG*
Ga0065201_1638753	Ga0065201_16387533	F000713	MPLVKKNITLAAGATSDQILQGTTYEYVDPGTRLVVAAAESTSTYSGNLVMNFTVNNAEFSRDVAVSEKVSGEAFGWNNTGYVLNDMVTTGQVRNRPVITFTNNDAAAVDLEVAIFIGG*
Ga0065201_1638795	Ga0065201_16387952	F097383	MSIIFAFYVSMACNLAVFGMFLYVIARVAKFNRSLKGLDWQAVADITGDIGAVKRSIQRLNNRLNGLEKTASTPDALAELALMHQQQQNVTQLQQPQRATGG*
Ga0065201_1638795	Ga0065201_16387954	F000713	MPLVKKNITVAAGATSDQILVGTPYEYVGPNTRLVVAAAESTGTYSGNVTMDFKVNNTEFSNDVAVSEKVSGEAFGWNNTGYVLNDMITTGAERNRPVITFTNGDAASVDIEVAIFIGG*
Ga0065201_1638857	Ga0065201_16388571	F005882	LCLYACTRVGNFIKATQGLEWDAIANITGDLATTKKTIQTLNNRINGMHSPKIAEQELMMQLLANQQKPQPNGKLQGG*
Ga0065201_1640495	Ga0065201_16404955	F008068	CNALLQPVLSRLKSAEEFAAFVSEPCVAPLGLDVVLVTAFWPRCVFNQTMEESVSRRLQTIKPQHLMLVERELYMKLTKKRCLFGDFLDSLLLHNEDRRKVFGLLSKVRSWIRENESHGLFFLTEVRGMEDVIDQAAGIFEIVVNAQVETKGDEPLLSFIIMKHPNIAEIDKRIEVVFEKGQPKQRRG*
Ga0065201_1640914	Ga0065201_16409145	F094909	MFNIKVLDWIEGYVLTRMLIFGDFVGTVTRTELMFDLDTSSDYFRIYEGQRIQALSLPVKSRRLCTLLGEIEACFQRGWRLMDAGEWTEADFDQVFELSKQISDEIMNLREEFKREQAGVSRISSIDPGGIP*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300004459: Marine microbial communities from Galveston Bay (MSEDA12C- fraction 11)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences