Sample 3300004383

Overview

Basic Information
IMG/M Taxon OID	3300004383 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114287 \| Gp0110139 \| Ga0064591
Sample Name	Marine microbial communities from Bothnian Bay, Baltic Sea
Sequencing Status	Permanent Draft
Sequencing Center	University of Gottingen
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	58161824
Sequencing Scaffolds	6
Novel Protein Genes	7
Associated Families	7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	1
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	1
All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	2
Not Available	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Marine Microbial Communities From Bothnian Bay, Baltic Sea
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine Sediment → Marine Microbial Communities From Bothnian Bay, Baltic Sea

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine benthic biome → marine benthic feature → marine sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Sediment (saline)

Location Information
Location	Bothnian Bay, Baltic Sea
Coordinates	Lat. (^o)	65.4530556	Long. (^o)	23.3088889	Alt. (m)	N/A	Depth (m)	75
Location on Map

Zoom:	Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F010462	Metagenome / Metatranscriptome	303	Y
F015265	Metagenome / Metatranscriptome	256	Y
F034973	Metagenome / Metatranscriptome	173	Y
F045581	Metagenome / Metatranscriptome	152	Y
F052406	Metagenome	142	Y
F081252	Metagenome	114	Y
F095347	Metagenome / Metatranscriptome	105	Y

Family

Category

Number of Sequences

3D Structure?

F010462

Metagenome / Metatranscriptome

303

F015265

Metagenome / Metatranscriptome

256

F034973

Metagenome / Metatranscriptome

173

F045581

Metagenome / Metatranscriptome

152

F052406

Metagenome

142

F081252

Metagenome

114

F095347

Metagenome / Metatranscriptome

105

Scaffold	Taxonomy	Length	IMG/M Link
Ga0064591_10006469	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	652	Open in IMG/M
Ga0064591_10015517	All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	1008	Open in IMG/M
Ga0064591_10039867	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	1038	Open in IMG/M
Ga0064591_10039926	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	547	Open in IMG/M
Ga0064591_10088528	Not Available	865	Open in IMG/M
Ga0064591_10384213	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0064591_10006469

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus

652

Open in IMG/M

Ga0064591_10015517

All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157

1008

Open in IMG/M

Ga0064591_10039867

All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium

1038

Open in IMG/M

Ga0064591_10039926

All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium

547

Open in IMG/M

Ga0064591_10088528

Not Available

865

Open in IMG/M

Ga0064591_10384213

All Organisms → cellular organisms → Bacteria

519

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0064591_10006469	Ga0064591_100064692	F015265	MFPDFITKSSTMYPAHITKNPALIEKNAIVNLNNVGLPVFRNPINDIIPIESPTKNPIKLSIFSNRNSNDD*
Ga0064591_10015517	Ga0064591_100155172	F081252	MLTPRLTTYPACATVTALLIDIDCRLTELASTLYNNIIYSLNQTIPAEAIMDLLNYKRILMYKFCNSDYAPCFTVEMIASRVKLLKYK*
Ga0064591_10039867	Ga0064591_100398673	F095347	IFMYLQAAKSKVEFCLEPQKGMSLYNYALKLLNKMECTNC*
Ga0064591_10039926	Ga0064591_100399261	F010462	MLYQLPNGKVVHLSIEEYLSLTDLDIQFLMSIDYGEHILDPFTGSAVEKNTREKYIDTDFLPLEDYDLNDIPSDDLPFDDIIDLQDPLDN*
Ga0064591_10088528	Ga0064591_100885281	F052406	MKRVDIFSINASDKTALMQMQTKLNQWLTAKSLVKYEIHTTGEYII
Ga0064591_10188363	Ga0064591_101883631	F034973	MSVLKSKTSLKKAPKVPPPKPINGNYMKEADTKLRLKSPQWPMKQKRLSK*
Ga0064591_10384213	Ga0064591_103842131	F045581	MNLQISTGSNELDNFYKKDFYFSYSSINKLLFSPRMFYNHYVLKQKEDSTDSHLVIGRVLHCLLLEPANFDNQFAVMTSKIPSENNKKIIDNIFRNYLVNQNNTLTLEDYSKDILTHLLT

Scaffold ID

Protein ID

Family

Sequence

Ga0064591_10006469

Ga0064591_100064692

F015265

MFPDFITKSSTMYPAHITKNPALIEKNAIVNLNNVGLPVFRNPINDIIPIESPTKNPIKLSIFSNRNSNDD*

Ga0064591_10015517

Ga0064591_100155172

F081252

MLTPRLTTYPACATVTALLIDIDCRLTELASTLYNNIIYSLNQTIPAEAIMDLLNYKRILMYKFCNSDYAPCFTVEMIASRVKLLKYK*

Ga0064591_10039867

Ga0064591_100398673

F095347

IFMYLQAAKSKVEFCLEPQKGMSLYNYALKLLNKMECTNC*

Ga0064591_10039926

Ga0064591_100399261

F010462

MLYQLPNGKVVHLSIEEYLSLTDLDIQFLMSIDYGEHILDPFTGSAVEKNTREKYIDTDFLPLEDYDLNDIPSDDLPFDDIIDLQDPLDN*

Ga0064591_10088528

Ga0064591_100885281

F052406

MKRVDIFSINASDKTALMQMQTKLNQWLTAKSLVKYEIHTTGEYII

Ga0064591_10188363

Ga0064591_101883631

F034973

MSVLKSKTSLKKAPKVPPPKPINGNYMKEADTKLRLKSPQWPMKQKRLSK*

Ga0064591_10384213

Ga0064591_103842131

F045581

MNLQISTGSNELDNFYKKDFYFSYSSINKLLFSPRMFYNHYVLKQKEDSTDSHLVIGRVLHCLLLEPANFDNQFAVMTSKIPSENNKKIIDNIFRNYLVNQNNTLTLEDYSKDILTHLLT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300004383: Marine microbial communities from Bothnian Bay, Baltic Sea

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences