NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F095347

Metagenome / Metatranscriptome Family F095347

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F095347
Family Type Metagenome / Metatranscriptome
Number of Sequences 105
Average Sequence Length 41 residues
Representative Sequence MYLEAAKSKVEFCHEPQKGMSLYNYALKLLNKMDCINC
Number of Associated Samples 84
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 2.86 %
% of genes near scaffold ends (potentially truncated) 94.29 %
% of genes from short scaffolds (< 2000 bps) 88.57 %
Associated GOLD sequencing projects 80
AlphaFold2 3D model prediction Yes
3D model pTM-score0.51

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (81.905 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake
(20.000 % of family members)
Environment Ontology (ENVO) Unclassified
(40.952 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(46.667 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 42.42%    β-sheet: 0.00%    Coil/Unstructured: 57.58%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.51
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 105 Family Scaffolds
PF03382DUF285 0.95
PF01391Collagen 0.95



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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A81.90 %
All OrganismsrootAll Organisms18.10 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2020350001|VrWwTxAD_contig52757All Organisms → cellular organisms → Bacteria1171Open in IMG/M
3300000126|BS_KBB_SWE26_205mDRAFT_c1053694All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium637Open in IMG/M
3300000756|JGI12421J11937_10142497Not Available601Open in IMG/M
3300002161|JGI24766J26685_10086717Not Available673Open in IMG/M
3300002408|B570J29032_108942547Not Available547Open in IMG/M
3300002835|B570J40625_100585689Not Available1025Open in IMG/M
3300002835|B570J40625_101708931Not Available512Open in IMG/M
3300004383|Ga0064591_10039867All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium1038Open in IMG/M
3300005527|Ga0068876_10114066Not Available1606Open in IMG/M
3300005580|Ga0049083_10069194Not Available1237Open in IMG/M
3300005662|Ga0078894_11086464Not Available684Open in IMG/M
3300006734|Ga0098073_1046608Not Available583Open in IMG/M
3300006916|Ga0070750_10368543Not Available604Open in IMG/M
3300007609|Ga0102945_1000163All Organisms → cellular organisms → Bacteria21027Open in IMG/M
3300007960|Ga0099850_1088163Not Available1290Open in IMG/M
3300008266|Ga0114363_1226098Not Available550Open in IMG/M
3300009149|Ga0114918_10109008Not Available1707Open in IMG/M
3300009149|Ga0114918_10570913Not Available600Open in IMG/M
3300009168|Ga0105104_10253150Not Available962Open in IMG/M
3300010354|Ga0129333_11659049Not Available521Open in IMG/M
3300011184|Ga0136709_1031492Not Available732Open in IMG/M
3300012964|Ga0153916_12526762Not Available579Open in IMG/M
3300013005|Ga0164292_10316806All Organisms → Viruses → Predicted Viral1063Open in IMG/M
(restricted) 3300013132|Ga0172372_10557143Not Available747Open in IMG/M
(restricted) 3300013138|Ga0172371_10688146Not Available696Open in IMG/M
3300013372|Ga0177922_11190106Not Available785Open in IMG/M
3300017716|Ga0181350_1010927All Organisms → Viruses → Predicted Viral2589Open in IMG/M
3300017716|Ga0181350_1017354Not Available2033Open in IMG/M
3300017716|Ga0181350_1153752Not Available535Open in IMG/M
3300017766|Ga0181343_1094281Not Available852Open in IMG/M
3300017774|Ga0181358_1047461Not Available1635Open in IMG/M
3300017778|Ga0181349_1249137Not Available593Open in IMG/M
3300017785|Ga0181355_1371021Not Available522Open in IMG/M
3300017786|Ga0181424_10305653Not Available660Open in IMG/M
3300019750|Ga0194000_1074453Not Available549Open in IMG/M
3300019781|Ga0181360_105227Not Available1094Open in IMG/M
3300019781|Ga0181360_111241Not Available744Open in IMG/M
3300019783|Ga0181361_106318Not Available908Open in IMG/M
3300019784|Ga0181359_1038666All Organisms → Viruses → Predicted Viral1848Open in IMG/M
3300020048|Ga0207193_1260979Not Available1294Open in IMG/M
3300020048|Ga0207193_1483724Not Available821Open in IMG/M
3300020160|Ga0211733_10046193Not Available772Open in IMG/M
3300020172|Ga0211729_11054418Not Available1537Open in IMG/M
3300020495|Ga0208720_1029162Not Available601Open in IMG/M
3300020573|Ga0208485_1055420Not Available696Open in IMG/M
3300021443|Ga0206681_10437485Not Available503Open in IMG/M
3300022190|Ga0181354_1040765Not Available1539Open in IMG/M
3300022198|Ga0196905_1133645All Organisms → cellular organisms → Bacteria645Open in IMG/M
3300022208|Ga0224495_10343627Not Available594Open in IMG/M
3300022407|Ga0181351_1076990All Organisms → Viruses → Predicted Viral1338Open in IMG/M
3300024262|Ga0210003_1194237Not Available836Open in IMG/M
3300024569|Ga0255243_1183367Not Available503Open in IMG/M
3300025091|Ga0209616_1017167Not Available734Open in IMG/M
3300025110|Ga0208158_1076852Not Available798Open in IMG/M
3300025646|Ga0208161_1002905All Organisms → cellular organisms → Bacteria8476Open in IMG/M
3300025769|Ga0208767_1116787Not Available1032Open in IMG/M
3300027608|Ga0208974_1022174Not Available1961Open in IMG/M
3300027722|Ga0209819_10351969Not Available503Open in IMG/M
3300027744|Ga0209355_1005165All Organisms → cellular organisms → Bacteria7001Open in IMG/M
3300027764|Ga0209134_10196000Not Available696Open in IMG/M
3300027785|Ga0209246_10386676Not Available527Open in IMG/M
3300027798|Ga0209353_10033505All Organisms → Viruses → Predicted Viral2388Open in IMG/M
3300027798|Ga0209353_10254349Not Available755Open in IMG/M
3300027816|Ga0209990_10098357Not Available1422Open in IMG/M
3300027899|Ga0209668_10069593Not Available1960Open in IMG/M
3300027899|Ga0209668_10726573Not Available667Open in IMG/M
3300027969|Ga0209191_1334821Not Available550Open in IMG/M
3300027971|Ga0209401_1276998Not Available592Open in IMG/M
(restricted) 3300027977|Ga0247834_1094232Not Available1362Open in IMG/M
(restricted) 3300028045|Ga0233414_10032440All Organisms → Viruses → Predicted Viral2097Open in IMG/M
(restricted) 3300028557|Ga0247832_1206716Not Available696Open in IMG/M
3300031539|Ga0307380_10158647Not Available2236Open in IMG/M
3300031539|Ga0307380_10753967Not Available811Open in IMG/M
3300031566|Ga0307378_10120952All Organisms → Viruses → Predicted Viral2689Open in IMG/M
3300031566|Ga0307378_10738335All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium839Open in IMG/M
3300031566|Ga0307378_11152084Not Available618Open in IMG/M
3300031566|Ga0307378_11218030Not Available594Open in IMG/M
3300031578|Ga0307376_10330158All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium1013Open in IMG/M
3300031578|Ga0307376_10335869Not Available1003Open in IMG/M
3300031669|Ga0307375_10304731Not Available1020Open in IMG/M
3300031669|Ga0307375_10462912All Organisms → cellular organisms → Bacteria772Open in IMG/M
3300031669|Ga0307375_10571001Not Available670Open in IMG/M
3300031746|Ga0315293_10087596Not Available2655Open in IMG/M
3300031746|Ga0315293_10161001Not Available1867Open in IMG/M
3300031758|Ga0315907_11163750Not Available543Open in IMG/M
3300031787|Ga0315900_10948168Not Available572Open in IMG/M
3300031787|Ga0315900_11095270Not Available514Open in IMG/M
3300031951|Ga0315904_10285837Not Available1555Open in IMG/M
3300031951|Ga0315904_10516332Not Available1050Open in IMG/M
3300031951|Ga0315904_10546276Not Available1010Open in IMG/M
3300031952|Ga0315294_10393003Not Available1300Open in IMG/M
3300032050|Ga0315906_11072769Not Available598Open in IMG/M
3300032053|Ga0315284_11211684Not Available828Open in IMG/M
3300032118|Ga0315277_10388382Not Available1437Open in IMG/M
3300032118|Ga0315277_11673300Not Available535Open in IMG/M
3300032275|Ga0315270_10051645All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dojkabacteria → Candidatus Dojkabacteria bacterium2311Open in IMG/M
3300032516|Ga0315273_12925031Not Available537Open in IMG/M
3300034022|Ga0335005_0244740Not Available1091Open in IMG/M
3300034023|Ga0335021_0273265Not Available915Open in IMG/M
3300034060|Ga0334983_0199589Not Available1242Open in IMG/M
3300034061|Ga0334987_0034393All Organisms → Viruses → Predicted Viral4375Open in IMG/M
3300034104|Ga0335031_0180204Not Available1443Open in IMG/M
3300034111|Ga0335063_0550860Not Available551Open in IMG/M
3300034119|Ga0335054_0210278Not Available1170Open in IMG/M
3300034119|Ga0335054_0612194Not Available595Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake20.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater12.38%
SoilEnvironmental → Terrestrial → Soil → Clay → Unclassified → Soil10.48%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment7.62%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater6.67%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous4.76%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater2.86%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater2.86%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface2.86%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment1.90%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater1.90%
Freshwater LenticEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic1.90%
Freshwater Lake SedimentEnvironmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment1.90%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake1.90%
Freshwater Lake SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment1.90%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater1.90%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine1.90%
SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment0.95%
Freshwater And SedimentEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment0.95%
Freshwater And SedimentEnvironmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment0.95%
Freshwater, PlanktonEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton0.95%
Freshwater WetlandsEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands0.95%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater0.95%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater0.95%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient0.95%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater0.95%
MarineEnvironmental → Aquatic → Marine → Wetlands → Sediment → Marine0.95%
Marine SedimentEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine Sediment0.95%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater0.95%
SedimentEnvironmental → Aquatic → Marine → Sediment → Unclassified → Sediment0.95%
Pond WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water0.95%
WastewaterEngineered → Wastewater → Nutrient Removal → Dissolved Organics (Anaerobic) → Unclassified → Wastewater0.95%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2020350001Viral communities in wastewater treatment process (AD)EngineeredOpen in IMG/M
3300000126Marine microbial communities from chronically polluted sediments in the Baltic Sea - site KBB sample SWE 26_20.5mEnvironmentalOpen in IMG/M
3300000756Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011EnvironmentalOpen in IMG/M
3300002161Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USAEnvironmentalOpen in IMG/M
3300002408Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)EnvironmentalOpen in IMG/M
3300002835Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)EnvironmentalOpen in IMG/M
3300004383Marine microbial communities from Bothnian Bay, Baltic SeaEnvironmentalOpen in IMG/M
3300005527Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaGEnvironmentalOpen in IMG/M
3300005580Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRFEnvironmentalOpen in IMG/M
3300005662Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)EnvironmentalOpen in IMG/M
3300006734Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaGEnvironmentalOpen in IMG/M
3300006916Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24EnvironmentalOpen in IMG/M
3300007609Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_H2O_MGEnvironmentalOpen in IMG/M
3300007960Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaGEnvironmentalOpen in IMG/M
3300008266Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NAEnvironmentalOpen in IMG/M
3300009149Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaGEnvironmentalOpen in IMG/M
3300009168Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015EnvironmentalOpen in IMG/M
3300010354Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNAEnvironmentalOpen in IMG/M
3300011184Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA - Floc-Cal metaGEnvironmentalOpen in IMG/M
3300012964Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaGEnvironmentalOpen in IMG/M
3300013005Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES117 metaGEnvironmentalOpen in IMG/M
3300013132 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_9.5mEnvironmentalOpen in IMG/M
3300013138 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_12mEnvironmentalOpen in IMG/M
3300013372Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPsEnvironmentalOpen in IMG/M
3300017716Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.DCM.DEnvironmentalOpen in IMG/M
3300017766Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.DEnvironmentalOpen in IMG/M
3300017774Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.DEnvironmentalOpen in IMG/M
3300017778Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.DEnvironmentalOpen in IMG/M
3300017785Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.NEnvironmentalOpen in IMG/M
3300017786Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 47 SPOT_SRF_2013-09-18EnvironmentalOpen in IMG/M
3300019750Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - FLT_6-7_MGEnvironmentalOpen in IMG/M
3300019781Freshwater viral communities from Lake Michigan, USA - Sp13.ND.MM15.S.DEnvironmentalOpen in IMG/M
3300019783Freshwater viral communities from Lake Michigan, USA - Sp13.ND.MM110.S.NEnvironmentalOpen in IMG/M
3300019784Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300020048Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915EnvironmentalOpen in IMG/M
3300020160Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1EnvironmentalOpen in IMG/M
3300020172Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1EnvironmentalOpen in IMG/M
3300020495Freshwater microbial communities from Lake Mendota, WI - 20APR2010 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020573Freshwater microbial communities from Lake Mendota, WI - 17JUL2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300021443Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 12015EnvironmentalOpen in IMG/M
3300022190Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.NEnvironmentalOpen in IMG/M
3300022198Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300022208Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_4_1EnvironmentalOpen in IMG/M
3300022407Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300024262Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300024569Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Atlam_RepB_8d (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300025091Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA - Floc-Cal metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025110Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025646Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025769Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (SPAdes)EnvironmentalOpen in IMG/M
3300027608Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027722Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015 (SPAdes)EnvironmentalOpen in IMG/M
3300027744Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN (SPAdes)EnvironmentalOpen in IMG/M
3300027764Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MLB.SN (SPAdes)EnvironmentalOpen in IMG/M
3300027785Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN (SPAdes)EnvironmentalOpen in IMG/M
3300027798Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD (SPAdes)EnvironmentalOpen in IMG/M
3300027816Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027899Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)EnvironmentalOpen in IMG/M
3300027969Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027971Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027977 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_12mEnvironmentalOpen in IMG/M
3300028045 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_10_MGEnvironmentalOpen in IMG/M
3300028557 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_4mEnvironmentalOpen in IMG/M
3300031539Soil microbial communities from Risofladan, Vaasa, Finland - UN-3EnvironmentalOpen in IMG/M
3300031566Soil microbial communities from Risofladan, Vaasa, Finland - UN-1EnvironmentalOpen in IMG/M
3300031578Soil microbial communities from Risofladan, Vaasa, Finland - TR-2EnvironmentalOpen in IMG/M
3300031669Soil microbial communities from Risofladan, Vaasa, Finland - TR-1EnvironmentalOpen in IMG/M
3300031746Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_20EnvironmentalOpen in IMG/M
3300031758Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123EnvironmentalOpen in IMG/M
3300031787Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114EnvironmentalOpen in IMG/M
3300031951Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120EnvironmentalOpen in IMG/M
3300031952Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40EnvironmentalOpen in IMG/M
3300032050Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA122EnvironmentalOpen in IMG/M
3300032053Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16EnvironmentalOpen in IMG/M
3300032118Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_15EnvironmentalOpen in IMG/M
3300032275Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_bottomEnvironmentalOpen in IMG/M
3300032516Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0EnvironmentalOpen in IMG/M
3300034022Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Apr2018-rr0058EnvironmentalOpen in IMG/M
3300034023Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Oct2016-rr0090EnvironmentalOpen in IMG/M
3300034060Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16May2013-rr0016EnvironmentalOpen in IMG/M
3300034061Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028EnvironmentalOpen in IMG/M
3300034104Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120EnvironmentalOpen in IMG/M
3300034111Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Oct2011-rr0186EnvironmentalOpen in IMG/M
3300034119Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Jul2015-rr0166EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
AD_4859102020350001WastewaterMYIEAAKAKVEICLEPSKGMELYGYAKKLLSNLIVHLVSNY
BS_KBB_SWE26_205mDRAFT_105369433300000126MarineIFMYLQAAKSKVEFCHEPQKGMSLYNYALKLLNKLECTHC*
JGI12421J11937_1014249713300000756Freshwater And SedimentEKLEALRIIRMYLDAAKSKVEVCHEPQKGMSLYNYALKLLMKMDCVNC*
JGI24766J26685_1008671713300002161Freshwater And SedimentMYLEAAXSKVEFCHEPQKGMSLYNYALKLLNKMDCINC*
B570J29032_10894254713300002408FreshwaterMYLEAAKAKVEFCHEPQKGMSLYNYALKMLNKLDCVNC*
B570J40625_10058568913300002835FreshwaterIKMYLESAKSKVEFCHEPQKGMSLYNYALKLLNKFECNNC*
B570J40625_10170893113300002835FreshwaterEALRIIRMYLDAAKAKVEFCHEPQKGMSLYNYALKLLMKMECVNC*
Ga0064591_1003986733300004383Marine SedimentIFMYLQAAKSKVEFCLEPQKGMSLYNYALKLLNKMECTNC*
Ga0068876_1011406633300005527Freshwater LakeLQAAKSKVEFCLEPQKGMSLYNYAVKLLNKMECKNC*
Ga0049083_1006919433300005580Freshwater LenticLRIIRMYLDAAKAKVEFCHEPQKGMSLYNYALKLLMKMECVNC*
Ga0078894_1108646433300005662Freshwater LakeLKMAKMYLDAAKAKVEFCHEPNHGMSLYNYALKIMNKLDCKNC*
Ga0098073_104660823300006734MarineLDELRKVRMYLEAAQAAVETCHEAQKGMTLYNYAIKILNKLDCKNC*
Ga0070750_1036854323300006916AqueousIKSYLDAAVAKVETCHEVQKGMSLYNYAIKLLNKLECKNC*
Ga0102945_100016313300007609Pond WaterIRTYLDAAKAKVEYCHEPQKGMTLYNYAIKLLNKLDCINC*
Ga0099850_108816333300007960AqueousIKMYLDAAKAKVETCHENQEGMTLFNYAVKLLNKLDCRNC*
Ga0114363_122609813300008266Freshwater, PlanktonYLEAAKAKVEFCHDPQKGMTLYNYALKMLNKLDCVNC*
Ga0114918_1010900813300009149Deep SubsurfaceQSAKSKVEYCLEPQKGMSLYNYALKLLNKLDCINC*
Ga0114918_1057091333300009149Deep SubsurfaceMYLEAAKGKVEFCHEPQKGMSLYNYAWKLLNKMDCVNC*
Ga0105104_1025315013300009168Freshwater SedimentLINMYLQAAKAKVEYCHEPQKGMSLYNYALKLLNKLTCTNC*
Ga0129333_1165904933300010354Freshwater To Marine Saline GradientLRMIKMYLEAAKAKVEYCLEPQKGMSLYNYAIKLLNKFECINC*
Ga0136709_103149213300011184FreshwaterLQAAKSKVETCHEPQKGMSLYNYAMKLLKKLSCINC*
Ga0153916_1252676213300012964Freshwater WetlandsTKQKLEQLGLIKMYLEAAKAKVEFCHDPQKGMTLYNYALKMLNKLDCVNC*
Ga0164292_1031680613300013005FreshwaterTKQRLEALGLIKMYLEAAKAKVEYCHEPQKGMSLYNYALKLLNKLDCVNC*
(restricted) Ga0172372_1055714313300013132FreshwaterLDAAKAKVEVCHEPQEGMQLYNYALKLLNKMECRTCK*
(restricted) Ga0172371_1068814633300013138FreshwaterAAKAKIETCHLSQEGMTLFNYAVKLLNKFECKNC*
Ga0177922_1119010613300013372FreshwaterALRLIFMYLQSAKSKVEYCLEPQKGMSLYNYALKLLNKLDCINC*
Ga0181350_101092733300017716Freshwater LakeLEALRIIRMYLDAAKAKVEVCHEPQKGMSLYNYALKLLMKM
Ga0181350_101735433300017716Freshwater LakeLQSAKSKVEYCHEPQKGMSLYNYALKLLNKLDCINC
Ga0181350_115375233300017716Freshwater LakeLEALRLIFMYLQSAKSKVEYCHEPQKGMSLYNYALKLLNKLSCTNC
Ga0181343_109428133300017766Freshwater LakeMAKMYLDAAKAKVEFCHEPNHGMSLYNYALKIMNKLDCKNC
Ga0181358_104746113300017774Freshwater LakeKLEALRIIRMYLDAAKAKVEVCHEPQKGMSLYNYALKLLMKMECVNC
Ga0181349_124913713300017778Freshwater LakeEALRIIRMYLDAAKSKVEVCHEPQKGMSLYNYALKLLMKMDCVNC
Ga0181355_137102133300017785Freshwater LakeIKMYLEAAKAKVEYCHDPQKGMTLYNYALKLLNKLDCVNC
Ga0181424_1030565313300017786SeawaterKLEQLHLIRMYLEAAKAKVEYCHEPQKGMTLYNYACKQLDRMNCTNC
Ga0194000_107445313300019750SedimentTCEPGSETEKKLDTLRKIRMYLDAAKAKVEVCHEPRKGLELYKYAVKLLNKFECKSCQNY
Ga0181360_10522713300019781Freshwater LakeMYLEAAKSKVEFCHEPQKGMSLYNYALKLLNKMDCINC
Ga0181360_11124133300019781Freshwater LakeYLDAAKAKVEFCHDPQKGMTLYNYALKLLNKFECKNC
Ga0181361_10631833300019783Freshwater LakeRAAKGKVEFCHEPQKGMSLYNYAWKLLNKMDCVNC
Ga0181359_103866613300019784Freshwater LakeLIKMYLEAAKAKVEFCHEPQKGMSLYNYALKMLNKLDCVNC
Ga0207193_126097923300020048Freshwater Lake SedimentTKLDKLREIKSYLEAAKAKVEDCHEPKKGMMLYDYAVKLLNKMDCVNC
Ga0207193_148372423300020048Freshwater Lake SedimentMYLESAKSKVEFCHEPQKGMSLYNYALKLLNKFECNNC
Ga0211733_1004619333300020160FreshwaterEKLEALRLIFMYLQSAKSKVEYCLEPQKGMSLYNYALKLLNKLDCINC
Ga0211729_1105441813300020172FreshwaterKMYLESAKSKVEFCHESQKGMSLYNYALKLLNKFECNNC
Ga0208720_102916213300020495FreshwaterLINMYLQAAKAKVEYCHEPQKGMSLYNYALKLLNKLTCTNC
Ga0208485_105542033300020573FreshwaterIKMYLDAAKSKVEFCHEPQKGMSLYNYALKLLKKMDCVNC
Ga0206681_1043748513300021443SeawaterGMYLENAKAKVETCHEQQEGMTLYNYALKLLNKLDCRNC
Ga0181354_104076513300022190Freshwater LakeIIRMYLDAAKSKVEFCHEPQKGMSLYNYALKLLMKMECVNC
Ga0196905_113364533300022198AqueousKIRMYLDAAKAKVEICHEPRKGMELYKYAVKLLNKFECKSCQNY
Ga0224495_1034362713300022208SedimentDAAKAKVEFCHEAQQGMTLYNYAIKLLNKFDCKTC
Ga0181351_107699033300022407Freshwater LakeEEKLEALRIIRMYLDAAKSKVEVCHEPQKGMSLYNYALKLLMKMECVNC
Ga0210003_119423733300024262Deep SubsurfaceQSAKSKVEYCLEPQKGMSLYNYALKLLNKLDCINC
Ga0255243_118336713300024569FreshwaterLIKMYLEAAKSKVEFCHEPQKGMSLYNYALKLLNKLDCINC
Ga0209616_101716733300025091FreshwaterLQAAKSKVETCHEPQKGMSLYNYAMKLLKKLSCINC
Ga0208158_107685213300025110MarineMYLEAAKAKVEYCHEPQKGMTLYNYACKLLGKMNCTNC
Ga0208161_100290583300025646AqueousIKMYLDAAKAKVETCHENQEGMTLFNYAVKLLNKLDCRNC
Ga0208767_111678733300025769AqueousTLLDAAKAAVEYCHEPTKGMDIYNYAVKLLDKINCVTC
Ga0208974_102217413300027608Freshwater LenticLDAAKAKVEFCHEPQKGMSLYNYALKLLMKMECVNC
Ga0209819_1035196933300027722Freshwater SedimentKLESLRMIRMYLDAAKAKVEFCHEPQKGMSLYNYAMKLLSKFECSNC
Ga0209355_100516553300027744Freshwater LakeLRIIRMYLDAAKSKVEFCHEPQKGMSLYNYALKLLMKMECVNC
Ga0209134_1019600013300027764Freshwater LakeRLIRMYLEAAKAKVEYCLEPDKGMTIYNYALKLLNKLDCKNC
Ga0209246_1038667613300027785Freshwater LakeDAAKAKVEFCHEPQKGMSLYNYALKLLMKMECVNC
Ga0209353_1003350513300027798Freshwater LakeRMYLDAAKAKVEFCHEPQKGMSLYNYALKLLMKMECVNC
Ga0209353_1025434913300027798Freshwater LakeKMYLEAAKAKVEYCHEPQKGMSLYNYALKLLNKLDCVNC
Ga0209990_1009835733300027816Freshwater LakeLERLRIIRMYLDAAKAKVEFCQEPQKGMTLYNYAIKLLNKFECKTC
Ga0209668_1006959313300027899Freshwater Lake SedimentLESAKSKVEFCHEPQKGMSLYNYALKLLNKFECNNC
Ga0209668_1072657313300027899Freshwater Lake SedimentLIRMYLEAAKAKVEYCLEPDKGMTIYNYALKLLNKLDCKKC
Ga0209191_133482113300027969Freshwater LakeQSAKSKVEYCHEPQKGMSLYNYALKLLNKLDCINC
Ga0209401_127699833300027971Freshwater LakeIRMYLDAAKAKVEFCHEPQKGMSLYNYALKLLMKMECVNC
(restricted) Ga0247834_109423233300027977FreshwaterLQAAKSKVEFCHEPQKGMSLYNYALKLLNKMECRNC
(restricted) Ga0233414_1003244023300028045SeawaterYLEAAKSKVETCHEQQEGMTLYNYALKLLNKLDCRNC
(restricted) Ga0247832_120671633300028557FreshwaterQAAKSKVEFCHEPQKGMSLYNYALKLLNKMECRNC
Ga0307380_1015864713300031539SoilIRMYLDAAKSKVEFCHEPQKGMSLYNYALKLLMKMECVNC
Ga0307380_1075396713300031539SoilLGLIRMYLEAAKSKVEFCHEPQKGMSLYNYAWKLLNKMDCINC
Ga0307378_1012095213300031566SoilYLDAAKSKVEVCHEPQKGMSLYNYALKLLMKMDCVNC
Ga0307378_1073833533300031566SoilQRLEELRLIFMYLQAAKSKVEFCLEPQKGMSLYNYALKLLNKMECTNC
Ga0307378_1115208433300031566SoilKLEALRIIRMYLDAAKSKVEVCHEPQKGMSLYNYALKLLMKMECVNC
Ga0307378_1121803013300031566SoilLEELGLIRMYLEAAKSKVEFCHEPQKGMSLYNYALKLLNKMDCINC
Ga0307376_1033015833300031578SoilRLIFMYLQAAKSKVEFCLEPQKGMSLYNYALKLLNKMECTNC
Ga0307376_1033586913300031578SoilQRLEELNFIKMYLEAAKSKVEFCHEPQKGMSLYNYALKLLNKMDCINC
Ga0307375_1030473113300031669SoilELNFIKMYLEAAKSKVEFCHEPQKGMSLYNYALKLLNKMDCINC
Ga0307375_1046291213300031669SoilAAKAKVEVCHEPLKGMELFNYAVKLLDKIECKSCMKS
Ga0307375_1057100113300031669SoilEELNFIKMYLEAAKSKVEFCHEPQKGMSLYNYALKLLNKMDCINC
Ga0315293_1008759613300031746SedimentIIRMYLDAAKAKVEFCHEPQKGMSLYNYALKLLMKMECVNC
Ga0315293_1016100113300031746SedimentIIRMYLDAAKSKVEVCHEPQKGMSLYNYALKLLMKMDCVNC
Ga0315907_1116375013300031758FreshwaterLEAAKAKVEYCHESQKGMSLYNYAIKLLNKFDCINC
Ga0315900_1094816833300031787FreshwaterLEAAKAKVEFCHEPQKGMSLYNYALKMLDKLECKNC
Ga0315900_1109527033300031787FreshwaterRVQQRMEKLRMIKSYLEAAKAKVENCHEPQKGMSLYNYAIKLLNKYDCVNC
Ga0315904_1028583733300031951FreshwaterEKLRMVRMYLDAAKAKVEFCHEPQKGMTLYNYAIKLLNKLDCVNC
Ga0315904_1051633213300031951FreshwaterIKMYLEAAKAKVEYCHESQKGMSLYNYAIKLLNKFDCINC
Ga0315904_1054627633300031951FreshwaterTLRLIFMYLQAAKSKVEFCHEPQKGMALYNYALKLLNKLSCTNC
Ga0315294_1039300333300031952SedimentRIIRMYLDAAKAKVEFCHEPQKGMSLYNYALKLLMKMECVNC
Ga0315906_1107276913300032050FreshwaterQAAKSKVEFCHEPQKGMALYNYALKLLNKLSCTNC
Ga0315284_1121168433300032053SedimentLEALRLINMYLQAAKAKVEYCHEPQKGMSLYNYALKLLNKLTCTNC
Ga0315277_1038838213300032118SedimentEKLEALRIIRMYLDAAKSKVEFCHEPQKGMSLYNYALKLLMKMECVNC
Ga0315277_1167330033300032118SedimentNFSFNMYLEAAKAKVEFCHEPLEGMQLFNYAVLLLNKMECRTCK
Ga0315270_1005164513300032275SedimentLKMAKMYLDAAKAKVEFCHEANQGMSLYNYAVKLMKKINCKSC
Ga0315273_1292503113300032516SedimentALRLIRMYLDAAKAKVEFCHEPQKGMSLYNYALKLLMKMECVNC
Ga0335005_0244740_2_1093300034022FreshwaterDAAKAKVEFCHEPTHGMTLYNYALKIMRKIECKNC
Ga0335021_0273265_741_8723300034023FreshwaterLREIKSYLEAAKAKVEDCHEPKKGMMLYDYAVKLLNKMDCVNC
Ga0334983_0199589_1114_12423300034060FreshwaterRLINMYLQAAKAKVEYCHEPQKGMSLYNYALKLLNKLTCTNC
Ga0334987_0034393_1_1263300034061FreshwaterFIKMYLDAAISKVEFCHEPQKGMSLYNYALKLLNKMTCTNC
Ga0335031_0180204_2_1093300034104FreshwaterEAAKGKVEFCHEPQKGMSLYNYAWKLLNKMDCVNC
Ga0335063_0550860_19_1353300034111FreshwaterMYLEAAKAKVEICHKSQEGMTLFNYAVKLLNKLDCKNC
Ga0335054_0210278_1060_11703300034119FreshwaterLQAAKAKVEYCHEPQKGMSLYNYALKLLNKLTCTNC
Ga0335054_0612194_1_1113300034119FreshwaterLDAAKAKIETCHLSQEGMTLFNYAVKLLNKFECKNC


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