Sample 3300004265

3300004265: Groundwater microbial communities from aquifer in Utah, USA - Crystal Geyser 4/10/14 3 um filter

Overview

Basic Information
IMG/M Taxon OID	3300004265 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111384 \| Gp0097054 \| Ga0051981
Sample Name	Groundwater microbial communities from aquifer in Utah, USA - Crystal Geyser 4/10/14 3 um filter
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	813327234
Sequencing Scaffolds	31
Novel Protein Genes	35
Associated Families	30

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
Not Available	14
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	6
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota	1
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense	2
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	2
All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium RBG_13_41_22	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus → Paenibacillus pasadenensis	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon	1
All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Leptospirillum → Leptospirillum sp. Group II → Leptospirillum sp. Group II 'C75'	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater biome → aquifer → groundwater
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline)

Location Information
Location	USA: Utah
Coordinates	Lat. (^o)	38.9383	Long. (^o)	-110.1342	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002184	Metagenome	585	Y
F002652	Metagenome	539	Y
F003801	Metagenome / Metatranscriptome	467	Y
F004273	Metagenome	445	Y
F004515	Metagenome	434	Y
F010662	Metagenome	300	Y
F011639	Metagenome	288	Y
F012552	Metagenome / Metatranscriptome	279	Y
F014811	Metagenome	260	Y
F019952	Metagenome / Metatranscriptome	226	Y
F030345	Metagenome	185	Y
F043771	Metagenome	155	Y
F053063	Metagenome	141	Y
F058693	Metagenome / Metatranscriptome	134	Y
F060597	Metagenome / Metatranscriptome	132	Y
F060838	Metagenome / Metatranscriptome	132	Y
F069687	Metagenome	123	Y
F071959	Metagenome / Metatranscriptome	121	Y
F073189	Metagenome	120	Y
F078228	Metagenome	116	Y
F079604	Metagenome / Metatranscriptome	115	N
F080880	Metagenome / Metatranscriptome	114	Y
F080881	Metagenome	114	N
F086649	Metagenome / Metatranscriptome	110	Y
F093503	Metagenome	106	Y
F094905	Metagenome	105	N
F094906	Metagenome	105	N
F096626	Metagenome / Metatranscriptome	104	N
F098657	Metagenome	103	N
F102531	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0051981_10046109	All Organisms → Viruses → Predicted Viral	1874	Open in IMG/M
Ga0051981_10069159	Not Available	1460	Open in IMG/M
Ga0051981_10096640	All Organisms → cellular organisms → Bacteria	1185	Open in IMG/M
Ga0051981_10131612	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	974	Open in IMG/M
Ga0051981_10133469	Not Available	965	Open in IMG/M
Ga0051981_10150744	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	892	Open in IMG/M
Ga0051981_10176083	Not Available	805	Open in IMG/M
Ga0051981_10180623	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota	792	Open in IMG/M
Ga0051981_10194724	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense	755	Open in IMG/M
Ga0051981_10196858	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	749	Open in IMG/M
Ga0051981_10212307	Not Available	713	Open in IMG/M
Ga0051981_10215628	Not Available	706	Open in IMG/M
Ga0051981_10225835	Not Available	685	Open in IMG/M
Ga0051981_10231292	Not Available	674	Open in IMG/M
Ga0051981_10240652	Not Available	657	Open in IMG/M
Ga0051981_10252527	Not Available	637	Open in IMG/M
Ga0051981_10257283	Not Available	629	Open in IMG/M
Ga0051981_10270247	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	609	Open in IMG/M
Ga0051981_10275200	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium RBG_13_41_22	602	Open in IMG/M
Ga0051981_10276593	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	600	Open in IMG/M
Ga0051981_10280626	Not Available	594	Open in IMG/M
Ga0051981_10299590	Not Available	568	Open in IMG/M
Ga0051981_10301867	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus → Paenibacillus pasadenensis	566	Open in IMG/M
Ga0051981_10304309	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense	563	Open in IMG/M
Ga0051981_10306440	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	560	Open in IMG/M
Ga0051981_10319644	Not Available	545	Open in IMG/M
Ga0051981_10322438	Not Available	542	Open in IMG/M
Ga0051981_10325695	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon	538	Open in IMG/M
Ga0051981_10332400	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Leptospirillum → Leptospirillum sp. Group II → Leptospirillum sp. Group II 'C75'	531	Open in IMG/M
Ga0051981_10361389	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	502	Open in IMG/M
Ga0051981_10361402	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	502	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0051981_10046109	Ga0051981_100461094	F093503	KPMKKYKVKIKHTDKEEIIKADSELEARVKFCEQNNLNYRHLAGKLEITLNNKPLQNNL*
Ga0051981_10069159	Ga0051981_100691593	F079604	MTKARRGITLIQNRKKFKLDTFFQDIHKSPVAFMEICHYQGKQVQKFKQTKRLLRLISECDKSIAVLPRGASKSFSFAIIALWYFYTHENFRVAIFSRSHRQSKAVLEICSDIIDSSPLLKTSRQSFQIDQKQRLKSHINSEIIAHPFDASTVLGEHPDIVLADECAFFGDDSFFRKVILPMQSGVRTIYKIPKISLVSTIDQDEGFFYDVWKNPEKYGYTKLKMTWQQCDGYTKEDMQKKKI
Ga0051981_10092047	Ga0051981_100920471	F094905	MNALYGYIAVFVVIVFLGAGWAVEHDKRITYQAKVEQAGADALAQTEKINAKHREEMQNAEQNTIIATNSI
Ga0051981_10096640	Ga0051981_100966402	F078228	MSLSEEMMKAIKEEKKKRKLGSIQETIRSILAEYFAKKS*
Ga0051981_10131612	Ga0051981_101316122	F102531	LSFASSILNLPNADNPAGWTLGTYGGQTNVIQPQKTVAGINQEIDKLVANGVDKLEAIRQVGSVSVPDYAATPEQIAQLQLADKARTADEILQCPYTWCRHNSTVSDAILESRGYQPYRAAMMMQTTEGLSAGGHQVSAIIVNGEPVFIDLTNNLIIPGQQALEQILLNSGKQLTALEMIRLTTNNVWDVINLIPK*
Ga0051981_10133469	Ga0051981_101334691	F043771	LRGWLWRGDSHLIAGSSPAVIAGIAGRKAVMDAVRLTKCECGCGCGEDATTSDGGVALCAACAEYAVDPESGEVVCSRDPRAEEITECCGAGGQTRSYWRIRPPVAPAVASDGEWACYWNTVGDGSRVVSRHATEAEAARAVVTRRQWVVAGGHPHYLYRYEVRQWDGEAWVAPYEAE*
Ga0051981_10150744	Ga0051981_101507443	F002184	MKYIAKYSRVWDDDVKPIQKPLQPTLYTCEELCSILNKDNYS
Ga0051981_10176083	Ga0051981_101760831	F071959	MASRNYLVMSNDMTLSDKKEYRLNALSAGLERCGLRGIGDIKADIPGLAGIPDANKVARVKLIHNYLITGQWPRSIDQRELTTGTDLVVAPAVDSLLTAPMAAVGNIVSCFQGVAAPQLVQGKLMVCYAVSVESSAVPMPVSRLIFRRGAAGNVQAQFDMEPMGIRWEVDAFFSEVVVIDPQDVFAIQVRCRNATAVPEIVHIHNFLFESAGLVVA*
Ga0051981_10180623	Ga0051981_101806231	F010662	MNTHKLLMSIAEAFMIYGLIIVGYGILAIHVTKTWFGDWHVDRYLPWLTLDMFMMISFALSFFGFIVWRYLKYIEETK*
Ga0051981_10194724	Ga0051981_101947241	F019952	MAQTVKSMRISSMGRVILLEKPRALRRIFYGIKVLTDLTMGHRSHISFDDPTFLSYYILDGQVQQLEAKGEGICQGDIWARNVSPAELIFDMTEILV*
Ga0051981_10196858	Ga0051981_101968581	F080880	LRVEKVGSCEDCVIKAKMNEQTKLREALDLTSLGRKTLDGLLEVAVGDKTIQDFIKEQKAESKNIIEILRGTIEWKTPSNFKEFTIILEEIRNLTQMFDIASHSEIENTVILRPKAFKRLPEVVAFQTAVMLEGVGAPFEIRMMGEDIAVKMIRQEIYPLRKKEFGESLDQQIEKRLATSRPGLFKNSLMLVGPGFMNWAEKHLEEPVTDLGSIIEDVRIALGVDELPREPKEFVMGLLSACVKMNWFK
Ga0051981_10212307	Ga0051981_102123072	F060838	MPTFQYVQPTDEQKQTMQTFRDKYESLAKEIGKLPTSRGLSLAFTKLEESSFWLNKAITQNS*
Ga0051981_10215628	Ga0051981_102156281	F069687	MEELARKIEQILNQFAQEETKNRLSQFSMIALKEIILNEIKSYKPKIKE
Ga0051981_10220085	Ga0051981_102200851	F094906	ENVQSAQYSVAVSNGDSKVYDVEMDIFGSLIRLHWKYFVASPPDNFSARYRINGGSWWSWSITRSGQQYHASDTGGWQTGDQLEINIYNPASGSETNIQDSILYGNDCF*
Ga0051981_10225835	Ga0051981_102258351	F080881	MSKNSKSSVALSELAVLPQFVAPVVEIAPEVLSMIVMDIDPALIEAAEIKEARLDAVKAKKDDAKRLLAQAHEIAKTLNPLCDEQDKVKEECRTLKDVLKDALLATRVALANHPEVLENKAQIVKAAPNLMAEFNEKFNAAVIKQTQIAQADNIARMKALDASFAELDKKTAQLSKQYDEYKALSTRLFAEADQLRVEYGFA*
Ga0051981_10231292	Ga0051981_102312921	F086649	NLTSESTDQQVQDAISAEIELCMNQPPPPGAENQQKYCAGKAYGMAREKTGKELNLGK*
Ga0051981_10240652	Ga0051981_102406521	F096626	LASSATKRMTSAMLLGMWRNSSKYVMDVAPKLTTMTGSQLLRYKANIERHEKRLTALCSRNPELALSASDLDKIMINLADDDADTAFGAYLADRTEEVRSKLTEDSEAL*
Ga0051981_10252527	Ga0051981_102525271	F004273	MKNDEKAVIAGAGVMLAYFLLKKKEKKVDIPNLSISPPVFYA*
Ga0051981_10257283	Ga0051981_102572831	F030345	MELKNERILIQTIEKRDRENESPWYAITGNQGRRFSCFEEEVAKKLQINKVNLCKVRYFGKYANVMSVEGYEDKPEGADANSEIRKERNIESLRILKCVALKCAAQCFDGQSASAGEVIAKSNAFLKWLFSIEDKDAI*
Ga0051981_10270247	Ga0051981_102702472	F004515	MTQTIRSVTVLPGQQRVLLEKPRVLYRIFFSIRALADQTVWYQSKISFDDPLFHSYYVLDGPGKYFEAYGEGIFQGDIWVRNASPVN
Ga0051981_10275200	Ga0051981_102752001	F053063	MTKDEISARIELLKKENDEDNTKLINLNQIRESVIQGMLVRNGRILELEEILKN*
Ga0051981_10276593	Ga0051981_102765932	F004515	MVQTVYSVTVFAGKKRIILEKPRVLRRVFFSIRALADQKVWLKSMLSFGDPLFRSFYVLNGPAKYFEAKGEGIFQGDVWIRNASDQ
Ga0051981_10280626	Ga0051981_102806262	F002652	MKKAKASVGAIPTQVNENRNKTFEKFFEKMRRVKALEIDIQKRENDFFWEYIQKPISTQEERDDRDILKRAAHLGFAGEWRAVFQERNEILEISTDIRELAGAQGKKNDAEKFAKWKEILEKIEKTNKNTV*
Ga0051981_10299590	Ga0051981_102995902	F014811	MWIYDYKTKKEYSTSSPRSKFYNYVIIEIEPIPGKPCIILVKKGMEEGRKPAQVLEQLDIFKNLSVPSAT*
Ga0051981_10301867	Ga0051981_103018671	F003801	RWKEIDDGKEEVDWLMANLHASIEREGNQQLEKKKNTKESVYIFSVPIDEIKKHILNRSVVKIEQVITMTNKIREDIYEFDQQIGIASPETDVEQEKKTKKIDDFQEEIRKRWEDVWRIKEEIHTTTDIIYEISHIRRKYIGVAEEEQMSWADILQEIKHKMKNSFCF*
Ga0051981_10304309	Ga0051981_103043092	F058693	LLNKPLVLNRIFFTVKVLTDPTIDYKLYISLGDPGFSSYFTLDGQVPYFEAKGEGIFQGDIWAQNVSAADLLVSMSEILV*
Ga0051981_10306440	Ga0051981_103064401	F073189	MLSTIDILSIIEEQEIYDVKYLATKLQIPLEQLKEILTNMRKHTLIEYDPRTGKVTLPTWLINIEKKMEKIKPTTGEIILPKYQEIKIQDITIGNFTKNDLELKLRFKAKQKEIAI
Ga0051981_10319644	Ga0051981_103196442	F058693	YSGWKVLLFEKPLVLKRIFYSVKVIVDPTTDYRSYISLGDPRFHSYYTLGGSVSFFEAKGEGIFQGDVWAQNVSSSELLFVVTEILV*
Ga0051981_10319767	Ga0051981_103197671	F098657	TREVITLIARGRELKAGLGITEDAQMAQFHTTVLTLLHGSAKEAYQVAVSHTAETRRQTEAEEATVEFFADLDKPTALVRFNRKRMLYNETLEIINDDFETGLNAICDQLLPFQALIKVKRYLRRHCHKPANMTIRQYVSCIRKINEHELPLLVPMSPDNQLPFDEVKELLFYGIPNRYR
Ga0051981_10322438	Ga0051981_103224381	F012552	MKKKGASVGAIPPQVEEIMKKTFEKLFQKIKYLKDMEVDVQKNENDFFWEYVQKPISTREERD
Ga0051981_10325695	Ga0051981_103256951	F011639	VWIKKKYVRPRLSPDELWLIYRLIDNQYWLLRKHPHPFRSLEEVSRLRRKILRLVNRCRKPKHQISLRQRLY*
Ga0051981_10328505	Ga0051981_103285051	F060597	MVQTVKSQTVYTGWKVILLEKPLASCRVFFSIKTLADPAAWRRSMISFDDPSFVSHYVFDGPLQQLEAKGEGIFQGTIWAWNVSPVDILFTVTEILL*
Ga0051981_10332400	Ga0051981_103324001	F080881	EIKAKKDDAKRLIVLCHEIAKTLNPLCDEWDRVKEERALLKGVLKDALLASRIALAGHPKVRENKAQIIKAAPNLMAEFNKRFDSAVIKQTRIVQADNIARMKALDQSFAELDKKTAQLSKQYDDCKALSTRLFAEADQLKVEYGFA*
Ga0051981_10361389	Ga0051981_103613891	F004515	MVQTLLSKTILPGQKLKLLEKPHVLNRVFFSIRALADDTVWYKSLVSFGDPLFHSFFVLNGPGKYFEARGEGIFQGDVWVRNLSNQNLEYTATEILI*
Ga0051981_10361402	Ga0051981_103614021	F004515	MVQTVISKTILAGQKRIFLEKPIALKRVFFSITALADPGMWYKSEVSFDDPLFLSFFVLNGPARHFEARGDGIFQGNVWVSNLSDYDLEYTATEILV*

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300004265: Groundwater microbial communities from aquifer in Utah, USA - Crystal Geyser 4/10/14 3 um filter

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences