Metagenome Family F078228

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F078228
Family Type	Metagenome
Number of Sequences	116
Average Sequence Length	45 residues
Representative Sequence	MARKFTMSIPESMYEALEVERKKRKLDTIQETIRSILAEYFREE
Number of Associated Samples	76
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Archaea
% of genes with valid RBS motifs	75.00 %
% of genes near scaffold ends (potentially truncated)	18.10 %
% of genes from short scaffolds (< 2000 bps)	56.90 %
Associated GOLD sequencing projects	67
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.65

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Archaea (46.552 % of family members)
NCBI Taxonomy ID	2157
Taxonomy	All Organisms → cellular organisms → Archaea

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment (30.172 % of family members)
Environment Ontology (ENVO)	Unclassified (32.759 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (30.172 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 38.89% β-sheet: 0.00% Coil/Unstructured: 61.11%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.65
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.65
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF10923	BrxC_BrxD	7.76
PF05559	DUF763	4.31
PF01402	RHH_1	1.72
PF01702	TGT	1.72
PF00326	Peptidase_S9	1.72
PF14520	HHH_5	0.86
PF16177	ACAS_N	0.86
PF00583	Acetyltransf_1	0.86
PF04055	Radical_SAM	0.86
PF14076	DUF4258	0.86
PF13263	PHP_C	0.86
PF14947	HTH_45	0.86
PF07705	CARDB	0.86
PF02697	VAPB_antitox	0.86
PF14338	Mrr_N	0.86
PF13588	HSDR_N_2	0.86
PF00005	ABC_tran	0.86
PF00801	PKD	0.86
PF01850	PIN	0.86
PF16795	Phage_integr_3	0.86
PF01867	Cas_Cas1	0.86
PF03965	Penicillinase_R	0.86
PF13394	Fer4_14	0.86
PF13304	AAA_21	0.86
PF01939	NucS	0.86
PF02796	HTH_7	0.86
PF07676	PD40	0.86
PF13649	Methyltransf_25	0.86
PF01916	DS	0.86
PF06739	SBBP	0.86
PF00857	Isochorismatase	0.86
PF04014	MazE_antitoxin	0.86
PF01663	Phosphodiest	0.86
PF01047	MarR	0.86
PF01637	ATPase_2	0.86
PF01351	RNase_HII	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG1415	Uncharacterized conserved protein, DUF763 domain	Function unknown [S]	4.31
COG0343	Queuine/archaeosine tRNA-ribosyltransferase	Translation, ribosomal structure and biogenesis [J]	1.72
COG1549	Archaeosine tRNA-ribosyltransferase, contains uracil-DNA-glycosylase and PUA domains	Translation, ribosomal structure and biogenesis [J]	1.72
COG0164	Ribonuclease HII	Replication, recombination and repair [L]	0.86
COG1039	Ribonuclease HIII	Replication, recombination and repair [L]	0.86
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	0.86
COG1373	Predicted ATPase, AAA+ superfamily	General function prediction only [R]	0.86
COG1518	CRISPR-Cas system-associated integrase Cas1	Defense mechanisms [V]	0.86
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.86
COG1637	Endonuclease NucS, RecB family	Replication, recombination and repair [L]	0.86
COG1672	Predicted ATPase, archaeal AAA+ ATPase superfamily	General function prediction only [R]	0.86
COG1753	Predicted antitoxin, CopG family	Defense mechanisms [V]	0.86
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.86
COG1899	Deoxyhypusine synthase	Translation, ribosomal structure and biogenesis [J]	0.86
COG3682	Transcriptional regulator, CopY/TcrY family	Transcription [K]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	54.31 %
Unclassified	root	N/A	45.69 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	54.31 %
Unclassified	root	N/A	45.69 %

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	46.55 %
Unclassified	root	N/A	45.69 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	7.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.69 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	22.41 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	12.07 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.59 %
Spirochaetes	phylum	All Organisms → cellular organisms → Bacteria → Spirochaetes	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.69 %
Candidatus Bathyarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota	19.83 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	2.59 %
Stenosarchaea group	clade	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group	1.72 %
Spirochaetia	class	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia	0.86 %
Candidatus Verstraetearchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Verstraetearchaeota	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.69 %
unclassified Candidatus Bathyarchaeota	no rank	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota	19.83 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2.59 %
Methanomicrobia	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	1.72 %
Candidatus Methanomethylicia	class	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Verstraetearchaeota → Candidatus Methanomethylicia	0.86 %
Spirochaetia	class	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.69 %
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	18.10 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	2.59 %
Methanomicrobiales	order	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	1.72 %
Candidatus Methanomethylicales	order	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Verstraetearchaeota → Candidatus Methanomethylicia → Candidatus Methanomethylicales	0.86 %
Candidatus Bathyarchaeota archaeon RBG_13_46_16b	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon RBG_13_46_16b	0.86 %
Candidatus Bathyarchaeota archaeon BA1	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon BA1	0.86 %
Spirochaetia	class	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.69 %
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	18.10 %
Deltaproteobacteria bacterium CG_4_8_14_3_um_filter_45_9	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium CG_4_8_14_3_um_filter_45_9	2.59 %
Methanomicrobiaceae	family	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanomicrobiaceae	1.72 %
Candidatus Methanomethylicales	order	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Verstraetearchaeota → Candidatus Methanomethylicia → Candidatus Methanomethylicales	0.86 %
Candidatus Bathyarchaeota archaeon RBG_13_46_16b	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon RBG_13_46_16b	0.86 %
Candidatus Bathyarchaeota archaeon BA1	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon BA1	0.86 %
Spirochaetia	class	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.69 %
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	18.10 %
Deltaproteobacteria bacterium CG_4_8_14_3_um_filter_45_9	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium CG_4_8_14_3_um_filter_45_9	2.59 %
Methanofollis	genus	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanomicrobiaceae → Methanofollis	1.72 %
Candidatus Methanomethylicales	order	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Verstraetearchaeota → Candidatus Methanomethylicia → Candidatus Methanomethylicales	0.86 %
Candidatus Bathyarchaeota archaeon RBG_13_46_16b	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon RBG_13_46_16b	0.86 %
Candidatus Bathyarchaeota archaeon BA1	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon BA1	0.86 %
Spirochaetia	class	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.69 %
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	18.10 %
Deltaproteobacteria bacterium CG_4_8_14_3_um_filter_45_9	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium CG_4_8_14_3_um_filter_45_9	2.59 %
Methanofollis liminatans	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanomicrobiaceae → Methanofollis → Methanofollis liminatans	1.72 %
Candidatus Methanomethylicales	order	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Verstraetearchaeota → Candidatus Methanomethylicia → Candidatus Methanomethylicales	0.86 %
Candidatus Bathyarchaeota archaeon RBG_13_46_16b	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon RBG_13_46_16b	0.86 %
Candidatus Bathyarchaeota archaeon BA1	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon BA1	0.86 %
Spirochaetia	class	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001580\|Draft_10000856	Not Available	32720	Open in IMG/M
3300001854\|JGI24422J19971_10050580	All Organisms → cellular organisms → Archaea → TACK group	2364	Open in IMG/M
3300001854\|JGI24422J19971_10332565	Not Available	595	Open in IMG/M
3300002908\|JGI25382J43887_10253506	Not Available	807	Open in IMG/M
3300003891\|Ga0063011_10159135	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1374	Open in IMG/M
3300004107\|Ga0065179_1033423	All Organisms → cellular organisms → Bacteria	1712	Open in IMG/M
3300004143\|Ga0066630_1061341	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium CG_4_8_14_3_um_filter_45_9	965	Open in IMG/M
3300004265\|Ga0051981_10096640	All Organisms → cellular organisms → Bacteria	1185	Open in IMG/M
3300005236\|Ga0066636_10006299	All Organisms → cellular organisms → Archaea	7631	Open in IMG/M
3300005253\|Ga0073583_1054291	Not Available	617	Open in IMG/M
3300005573\|Ga0078972_1032156	All Organisms → cellular organisms → Archaea → Euryarchaeota	5217	Open in IMG/M
3300005800\|Ga0079639_1017000	Not Available	1891	Open in IMG/M
3300005860\|Ga0080004_1096597	All Organisms → cellular organisms → Archaea → Euryarchaeota	1657	Open in IMG/M
3300007776\|Ga0105674_1301474	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia	883	Open in IMG/M
3300007985\|Ga0100381_1162778	All Organisms → cellular organisms → Bacteria	1161	Open in IMG/M
3300007999\|Ga0105163_1073344	Not Available	532	Open in IMG/M
3300008000\|Ga0105162_1017175	All Organisms → cellular organisms → Archaea → Euryarchaeota	1907	Open in IMG/M
3300008003\|Ga0100391_1058741	Not Available	2391	Open in IMG/M
3300008007\|Ga0100386_10517078	Not Available	535	Open in IMG/M
3300008019\|Ga0105158_1003587	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanomicrobiaceae → Methanofollis → Methanofollis liminatans	5327	Open in IMG/M
3300008019\|Ga0105158_1024326	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanomicrobiaceae → Methanofollis → Methanofollis liminatans	1573	Open in IMG/M
3300008019\|Ga0105158_1061319	Not Available	832	Open in IMG/M
3300008516\|Ga0111033_1168288	Not Available	2504	Open in IMG/M
3300009034\|Ga0115863_1035745	All Organisms → cellular organisms → Archaea → TACK group	6541	Open in IMG/M
3300009034\|Ga0115863_1165819	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	2690	Open in IMG/M
3300009034\|Ga0115863_1210569	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	2336	Open in IMG/M
3300009034\|Ga0115863_1381474	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon BA1	1639	Open in IMG/M
3300009034\|Ga0115863_1637214	Not Available	1202	Open in IMG/M
3300009090\|Ga0099827_10714282	Not Available	866	Open in IMG/M
3300009136\|Ga0118735_10078861	Not Available	1013	Open in IMG/M
3300009149\|Ga0114918_10090385	Not Available	1925	Open in IMG/M
3300009150\|Ga0114921_10032585	Not Available	3129	Open in IMG/M
3300009150\|Ga0114921_10066544	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	2306	Open in IMG/M
3300009150\|Ga0114921_10825276	Not Available	688	Open in IMG/M
3300009488\|Ga0114925_11477810	Not Available	504	Open in IMG/M
3300009499\|Ga0114930_10026679	All Organisms → cellular organisms → Archaea → Euryarchaeota	3869	Open in IMG/M
3300009529\|Ga0114919_10329516	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1068	Open in IMG/M
3300010324\|Ga0129297_10009613	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	4798	Open in IMG/M
3300010324\|Ga0129297_10193172	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon RBG_13_46_16b	937	Open in IMG/M
3300010332\|Ga0116200_10282741	Not Available	814	Open in IMG/M
3300012206\|Ga0137380_11378831	Not Available	590	Open in IMG/M
3300012207\|Ga0137381_10490892	Not Available	1072	Open in IMG/M
3300012207\|Ga0137381_11369499	Not Available	600	Open in IMG/M
3300012349\|Ga0137387_10571817	Not Available	820	Open in IMG/M
3300012964\|Ga0153916_12690313	Not Available	561	Open in IMG/M
(restricted) 3300013128\|Ga0172366_10028194	All Organisms → cellular organisms → Archaea → Euryarchaeota	4120	Open in IMG/M
(restricted) 3300013128\|Ga0172366_10582955	Not Available	664	Open in IMG/M
3300014913\|Ga0164310_10239685	Not Available	1096	Open in IMG/M
3300014914\|Ga0164311_10692810	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	581	Open in IMG/M
3300018077\|Ga0184633_10001267	Not Available	10380	Open in IMG/M
3300021469\|Ga0190361_1082060	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	985	Open in IMG/M
3300021472\|Ga0190363_1000120	All Organisms → cellular organisms → Archaea	43308	Open in IMG/M
3300021472\|Ga0190363_1013780	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	3805	Open in IMG/M
3300022221\|Ga0224506_10190521	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium CG_4_8_14_3_um_filter_45_9	950	Open in IMG/M
3300022223\|Ga0224501_10379996	Not Available	703	Open in IMG/M
3300022544\|Ga0212120_1012238	All Organisms → cellular organisms → Archaea → Euryarchaeota	2728	Open in IMG/M
3300022546\|Ga0212122_1002309	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	10102	Open in IMG/M
3300022546\|Ga0212122_1012880	All Organisms → cellular organisms → Archaea → Euryarchaeota	2911	Open in IMG/M
3300022546\|Ga0212122_1043085	Not Available	1073	Open in IMG/M
3300022546\|Ga0212122_1086856	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	603	Open in IMG/M
3300024263\|Ga0209978_10005099	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	6035	Open in IMG/M
3300024263\|Ga0209978_10062992	Not Available	1881	Open in IMG/M
3300024353\|Ga0209979_1031237	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	2836	Open in IMG/M
3300024433\|Ga0209986_10299712	Not Available	761	Open in IMG/M
3300024433\|Ga0209986_10477416	Not Available	553	Open in IMG/M
3300025016\|Ga0210014_1153806	Not Available	683	Open in IMG/M
3300025021\|Ga0210017_1005668	Not Available	9926	Open in IMG/M
3300025022\|Ga0210056_1003517	All Organisms → cellular organisms → Archaea	12722	Open in IMG/M
3300025092\|Ga0209822_1045363	Not Available	964	Open in IMG/M
3300025139\|Ga0210021_1157465	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium CG_4_8_14_3_um_filter_45_9	916	Open in IMG/M
3300025143\|Ga0209314_10006465	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	4773	Open in IMG/M
3300025845\|Ga0210053_1046300	All Organisms → cellular organisms → Bacteria	2060	Open in IMG/M
3300026297\|Ga0209237_1013389	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	4851	Open in IMG/M
3300027742\|Ga0209121_10001152	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	27649	Open in IMG/M
3300027742\|Ga0209121_10031555	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	3097	Open in IMG/M
3300027863\|Ga0207433_10217438	Not Available	1428	Open in IMG/M
3300027893\|Ga0209636_10016754	All Organisms → cellular organisms → Archaea	7460	Open in IMG/M
3300027893\|Ga0209636_10063200	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	3635	Open in IMG/M
3300027893\|Ga0209636_10323967	Not Available	1345	Open in IMG/M
3300027893\|Ga0209636_10718003	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	780	Open in IMG/M
3300027893\|Ga0209636_11241057	Not Available	522	Open in IMG/M
3300031463\|Ga0272448_1074326	All Organisms → cellular organisms → Archaea → Euryarchaeota	2338	Open in IMG/M
3300031539\|Ga0307380_11314150	Not Available	552	Open in IMG/M
(restricted) 3300031587\|Ga0315308_1273100	Not Available	592	Open in IMG/M
(restricted) 3300031587\|Ga0315308_1334897	Not Available	509	Open in IMG/M
(restricted) 3300031604\|Ga0315309_1040597	Not Available	2218	Open in IMG/M
(restricted) 3300031604\|Ga0315309_1238174	Not Available	681	Open in IMG/M
3300031707\|Ga0315291_10999520	Not Available	704	Open in IMG/M
3300031707\|Ga0315291_11070160	Not Available	672	Open in IMG/M
3300031772\|Ga0315288_10004552	All Organisms → cellular organisms → Archaea	17668	Open in IMG/M
3300031862\|Ga0315280_10001936	All Organisms → cellular organisms → Archaea	34458	Open in IMG/M
3300031862\|Ga0315280_10013903	All Organisms → cellular organisms → Archaea → Euryarchaeota	9470	Open in IMG/M
3300031862\|Ga0315280_10017550	All Organisms → cellular organisms → Archaea	8001	Open in IMG/M
3300031862\|Ga0315280_10063688	Not Available	2962	Open in IMG/M
(restricted) 3300031876\|Ga0315310_10019975	All Organisms → cellular organisms → Bacteria	3909	Open in IMG/M
(restricted) 3300031876\|Ga0315310_10106468	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1369	Open in IMG/M
(restricted) 3300031876\|Ga0315310_10141704	Not Available	1132	Open in IMG/M
(restricted) 3300031876\|Ga0315310_10183677	Not Available	951	Open in IMG/M
(restricted) 3300031876\|Ga0315310_10241101	All Organisms → cellular organisms → Archaea	788	Open in IMG/M
(restricted) 3300031898\|Ga0315312_1004628	All Organisms → cellular organisms → Archaea	8289	Open in IMG/M
(restricted) 3300031898\|Ga0315312_1016680	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	3542	Open in IMG/M
3300031952\|Ga0315294_10001764	All Organisms → cellular organisms → Archaea	23663	Open in IMG/M
3300031952\|Ga0315294_10350841	All Organisms → cellular organisms → Archaea → Euryarchaeota	1399	Open in IMG/M
3300031999\|Ga0315274_10061698	All Organisms → cellular organisms → Archaea → Euryarchaeota	5000	Open in IMG/M
3300031999\|Ga0315274_11213959	Not Available	745	Open in IMG/M
3300032020\|Ga0315296_10626652	Not Available	549	Open in IMG/M
3300032046\|Ga0315289_10399053	Not Available	1369	Open in IMG/M
3300032046\|Ga0315289_10408225	Not Available	1347	Open in IMG/M
3300032069\|Ga0315282_10003000	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Verstraetearchaeota → Candidatus Methanomethylicia → Candidatus Methanomethylicales	30535	Open in IMG/M
3300032069\|Ga0315282_10003431	All Organisms → cellular organisms → Archaea	28459	Open in IMG/M
3300032069\|Ga0315282_10003577	All Organisms → cellular organisms → Archaea	27852	Open in IMG/M
3300032070\|Ga0315279_10035462	All Organisms → cellular organisms → Archaea → Euryarchaeota	4977	Open in IMG/M
3300032118\|Ga0315277_10000375	All Organisms → cellular organisms → Archaea	71697	Open in IMG/M
3300032118\|Ga0315277_10363434	Not Available	1499	Open in IMG/M
3300032516\|Ga0315273_11523353	Not Available	821	Open in IMG/M
3300033991\|Ga0334965_0000593	All Organisms → cellular organisms → Archaea	28592	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.14%
Engineered	Engineered	0.86%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	92.24%
Terrestrial	Environmental → Terrestrial	6.90%
Wastewater	Engineered → Wastewater	0.86%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	43.97%
Marine	Environmental → Aquatic → Marine	31.90%
Thermal Springs	Environmental → Aquatic → Thermal Springs	13.79%
Soil	Environmental → Terrestrial → Soil	6.90%
Sediment	Environmental → Aquatic → Sediment	1.72%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	0.86%
Industrial Wastewater	Engineered → Wastewater → Industrial Wastewater	0.86%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	32.76%
Oceanic	Environmental → Aquatic → Marine → Oceanic	17.24%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	12.93%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	10.34%
Hydrothermal Vents	Environmental → Aquatic → Marine → Hydrothermal Vents	6.03%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	6.03%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	4.31%
Sediment	Environmental → Aquatic → Marine → Sediment	1.72%
Oil Seeps	Environmental → Aquatic → Marine → Oil Seeps	1.72%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.72%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.86%
Coastal	Environmental → Aquatic → Marine → Coastal	0.86%
Sediment	Environmental → Aquatic → Thermal Springs → Sediment	0.86%
Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline	0.86%
Clay	Environmental → Terrestrial → Soil → Clay	0.86%
Petrochemical	Engineered → Wastewater → Industrial Wastewater → Petrochemical	0.86%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	32.76%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	17.24%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	10.34%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment	10.34%
Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Sediment	4.31%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	4.31%
Microbial Mats	Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats	2.59%
Sediment	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment	2.59%
Unclassified	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified	2.59%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	1.72%
Unclassified	Environmental → Aquatic → Marine → Oil Seeps → Unclassified	1.72%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.72%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.72%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.86%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	0.86%
Diffuse Flow	Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow	0.86%
Unclassified	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified	0.86%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline → Unclassified	0.86%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.86%
Unclassified	Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	30.17%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	10.34%
Hot Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring	9.48%
Marine Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment	6.90%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	5.17%
Aquifer	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer	5.17%
Sediment, Intertidal	Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Sediment, Intertidal	4.31%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.31%
Lake Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Lake Sediment	2.59%
Hydrothermal Vent Microbial Mat	Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat	2.59%
Marine Sediment	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment	1.72%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	1.72%
Marine	Environmental → Aquatic → Marine → Oil Seeps → Unclassified → Marine	1.72%
Hot Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring	1.72%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.72%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.86%
Marine Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment	0.86%
Diffuse Vent Fluid, Hydrothermal Vents	Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Vent Fluid, Hydrothermal Vents	0.86%
Marine Hydrothermal Vent	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent	0.86%
Hot Spring Sediments	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Sediments	0.86%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment	0.86%
Thermal Hot Spring	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Thermal Hot Spring	0.86%
Sulfidic Aquatic	Environmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline → Unclassified → Sulfidic Aquatic	0.86%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.86%
Marine Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Sediment	0.86%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.86%
Hydrocarbon Resource Environments	Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001580	Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - Microbes from Suncor taillings pond 6 2012TP6_6	Engineered	Open in IMG/M
3300001854	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-1-52-54	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300003891	Hot spring sediment microbial communities from Chocolate Pots, Yellowstone National Park, Wyoming that are Fe(III) reducing sample CP Core 1 1cm	Environmental	Open in IMG/M
3300004107	Groundwater microbial communities from aquifer in Utah, USA - Crystal Geyser 4/8/14 3 um filter (version 2)	Environmental	Open in IMG/M
3300004143	Groundwater microbial communities from aquifer - Crystal Geyser CG01_land_8/20/14_3.00	Environmental	Open in IMG/M
3300004265	Groundwater microbial communities from aquifer in Utah, USA - Crystal Geyser 4/10/14 3 um filter	Environmental	Open in IMG/M
3300005236	Groundwater microbial communities from aquifer - Crystal Geyser CG07_land_8/20/14_0.80	Environmental	Open in IMG/M
3300005253	Marine sediment microbial community near Loki's castle	Environmental	Open in IMG/M
3300005573	Hot spring thermophilic microbial communities from Obsidian Pool, Yellowstone National Park, USA - OP-RAMG-01 (SPADES assembly)	Environmental	Open in IMG/M
3300005800	Sediment microbial communities of hot springs in Rotorua, New Zealand ? Tikitere hot spring, NZ13	Environmental	Open in IMG/M
3300005860	Sulfidic aquatic microbial communities from Washburn Spring, Yellowstone National Park, USA - WS (SPADES assembly)	Environmental	Open in IMG/M
3300007776	Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS915_Marker113_DNA CLC_assembly	Environmental	Open in IMG/M
3300007985	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-05	Environmental	Open in IMG/M
3300007999	Hot spring microbial communities from Jinze hot spring, China to study Microbial Dark Matter (Phase II) - JNZ 110809A	Environmental	Open in IMG/M
3300008000	Hot spring microbial communities from Jinze hot spring, China to study Microbial Dark Matter (Phase II) - JNZ 20120812A	Environmental	Open in IMG/M
3300008003	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-15	Environmental	Open in IMG/M
3300008007	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-10	Environmental	Open in IMG/M
3300008019	Hot spring microbial communities from Little Hot Creek, USA to study Microbial Dark Matter (Phase II) - LHC4sed_matched	Environmental	Open in IMG/M
3300008516	Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 125 cmbsf. Combined Assembly of MM3PM3	Environmental	Open in IMG/M
3300009034	Intertidal mud flat sediment archaeal communities from Garolim Bay, Chungcheongnam-do, Korea	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009136	Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 82 cmbsf	Environmental	Open in IMG/M
3300009149	Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG	Environmental	Open in IMG/M
3300009150	Deep subsurface microbial communities from South Atlantic Ocean to uncover new lineages of life (NeLLi) - Benguela_00093 metaG	Environmental	Open in IMG/M
3300009488	Deep subsurface microbial communities from Indian Ocean to uncover new lineages of life (NeLLi) - Sumatra_00607 metaG	Environmental	Open in IMG/M
3300009499	Deep subsurface microbial communities from Anholt, Denmark to uncover new lineages of life (NeLLi) - Anholt_01485 metaG	Environmental	Open in IMG/M
3300009529	Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG	Environmental	Open in IMG/M
3300010324	Lake sediment bacterial and archeal communities from Gulf of Boni, Indonesia to study Microbial Dark Matter (Phase II) - ?I18A1 metaG	Environmental	Open in IMG/M
3300010332	Marine hydrothermal vent microbial communities from Guaymas Basin, Gulf of California to study Microbial Dark Matter (Phase II) - Marker 14 Mat core 4571-4 3-6 cm metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012964	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaG	Environmental	Open in IMG/M
3300013128 (restricted)	Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 69cm	Environmental	Open in IMG/M
3300014913	Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay1, Core 4569-9, 0-3 cm	Environmental	Open in IMG/M
3300014914	Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay2, Core 4569-9, 9-12 cm	Environmental	Open in IMG/M
3300018077	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1	Environmental	Open in IMG/M
3300021469	Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-4-5_MG	Environmental	Open in IMG/M
3300021472	Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-6-7_MG	Environmental	Open in IMG/M
3300022221	Sediment microbial communities from San Francisco Bay, California, United States - SF_Jan12_sed_USGS_8_1	Environmental	Open in IMG/M
3300022223	Sediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_8_1	Environmental	Open in IMG/M
3300022544	Jinze_combined assembly	Environmental	Open in IMG/M
3300022546	LHC4_combined assembly	Environmental	Open in IMG/M
3300024263	Deep subsurface microbial communities from South Atlantic Ocean to uncover new lineages of life (NeLLi) - Benguela_00093 metaG (SPAdes)	Environmental	Open in IMG/M
3300024353	Deep subsurface microbial communities from Anholt, Denmark to uncover new lineages of life (NeLLi) - Anholt_01485 metaG (SPAdes)	Environmental	Open in IMG/M
3300024433	Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG (SPAdes)	Environmental	Open in IMG/M
3300025016	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-19 (SPAdes)	Environmental	Open in IMG/M
3300025021	Groundwater microbial communities from aquifer - Crystal Geyser CG08_land_8/20/14_0.20 (SPAdes)	Environmental	Open in IMG/M
3300025022	Groundwater microbial communities from aquifer - Crystal Geyser CG07_land_8/20/14_0.80 (SPAdes)	Environmental	Open in IMG/M
3300025092	Hot spring microbial communities from Little Hot Creek, USA to study Microbial Dark Matter (Phase II) - LHC4sed_matched (SPAdes)	Environmental	Open in IMG/M
3300025139	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-17 (SPAdes)	Environmental	Open in IMG/M
3300025143	Lake sediment bacterial and archeal communities from Gulf of Boni, Indonesia to study Microbial Dark Matter (Phase II) - ?I19B2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025845	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-12 (SPAdes)	Environmental	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300027742	Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Sample 3 (SPAdes)	Environmental	Open in IMG/M
3300027863	Hot spring thermophilic microbial communities from Obsidian Pool, Yellowstone National Park, USA - OP-RAMG-01 (SPAdes)	Environmental	Open in IMG/M
3300027893	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-1-52-54 (SPAdes)	Environmental	Open in IMG/M
3300031463	Hot spring sediment microbial communities from Yellowstone National Park, WY, United States - YNP-CB-019-1	Environmental	Open in IMG/M
3300031539	Soil microbial communities from Risofladan, Vaasa, Finland - UN-3	Environmental	Open in IMG/M
3300031587 (restricted)	Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP3	Environmental	Open in IMG/M
3300031604 (restricted)	Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP4	Environmental	Open in IMG/M
3300031707	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20	Environmental	Open in IMG/M
3300031772	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_20	Environmental	Open in IMG/M
3300031862	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_40	Environmental	Open in IMG/M
3300031876 (restricted)	Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP5	Environmental	Open in IMG/M
3300031898 (restricted)	Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP7	Environmental	Open in IMG/M
3300031952	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40	Environmental	Open in IMG/M
3300031999	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20	Environmental	Open in IMG/M
3300032020	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_18	Environmental	Open in IMG/M
3300032046	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_40	Environmental	Open in IMG/M
3300032069	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_20	Environmental	Open in IMG/M
3300032070	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_20	Environmental	Open in IMG/M
3300032118	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_15	Environmental	Open in IMG/M
3300032516	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0	Environmental	Open in IMG/M
3300033991	Sediment microbial communities from Lake Vrana, Zadar, Croatia - 4 bact	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
Draft_1000085624	3300001580	Hydrocarbon Resource Environments	MAEKFTMSVPDAMKKALEVEQGKRKLDTVQETIRSILAEYFAGK*
JGI24422J19971_100505802	3300001854	Marine Sediment	MSIPEAMRKGLEKEKERRKLDTIQETIRSILAEYFKSNS*
JGI24422J19971_103325652	3300001854	Marine Sediment	MAEKFTMSVPESMYQALEKERKKRKLGTIQETIRFILAE
JGI25382J43887_102535061	3300002908	Grasslands Soil	MAAKFTMSVPSAMKVALEEERRRRKLDSIQETIRSILSEYFSGLSKR*
Ga0063011_101591352	3300003891	Hot Spring Sediments	MSKFTMSIPEAMKKALEEERKRRCLDTIQETIRSITSEYFVQKKE*
Ga0065179_10334232	3300004107	Groundwater	LPKFTMSLSEEMMKAIKEEKKKRKLGSIQETIRSILAEYFAKKS*
Ga0066630_10613411	3300004143	Groundwater	LPKFTMSLSEEMMKAIKEEKKKRKLGSIQETIRSILAEYFAK
Ga0051981_100966402	3300004265	Groundwater	MSLSEEMMKAIKEEKKKRKLGSIQETIRSILAEYFAKKS*
Ga0066636_100062994	3300005236	Groundwater	LPKFTMSLSEEMMKAIKEEKKKRKLGFIQETIRSILAEYFAKKS*
Ga0073583_10542912	3300005253	Marine Sediment	MVKFSMSVPQAMQDALDEEQKQRRLDNTQETIRSILAEYFRGCARKF*
Ga0078972_10321561	3300005573	Hot Spring	MAKKFTMSIPDAMHAALEKERQKRKLGTIQELIRFIIAEYLKEKST*
Ga0079639_10170001	3300005800	Thermal Hot Spring	MAKKFTMSIPEAMYIALEKERQKRKLGTIQELIRFILADYLKEKST*
Ga0080004_10965972	3300005860	Sulfidic Aquatic	MSKKFTMSVPDSMNRALQKECQKRRLGTIQETIRSILAEYFKEEGNNTSSN*
Ga0105674_13014742	3300007776	Diffuse Vent Fluid, Hydrothermal Vents	MADKFTMSLPNSMKDALNIEMKKRKCDTFQETIRSILSEYFRNQGRV*
Ga0100381_11627781	3300007985	Aquifer	EMMKAIKEEKKKRKLGSIQETIRSILAEYFAKKS*
Ga0105163_10733442	3300007999	Hot Spring	MAKKFTMSMPDDMYAALEKERQKRKLGTIQELIRFIISDYFKEKTT*
Ga0105162_10171752	3300008000	Hot Spring	MAKKFTMSMPDDMYAALEKERQRRKLGTIQELIRFIISDYFKEKTT*
Ga0100391_10587413	3300008003	Aquifer	MSLSEEMMKAIKEEKKKRKLGFIQETIRSILAEYFAKKS*
Ga0100386_105170781	3300008007	Aquifer	FTMSLSEEMMKAIKEEKKKRKLGFIQETIRSILAEYFAKKS*
Ga0105158_10035872	3300008019	Hot Spring	MAKKFTMSIPDAMYAALERERQKRKLGTIQELVRFIIAEYLKEKGT*
Ga0105158_10243262	3300008019	Hot Spring	VAKKFTMSIPDAMYAALEKERQKRKLGTIQEIIRFIIAEYLKEKSS*
Ga0105158_10613191	3300008019	Hot Spring	VAKKFTMSIPDAMYAALEKERQKRKLGTIQELIRFIIAEYLKEKGI*
Ga0111033_11682884	3300008516	Marine Sediment	MAKFTMSVPEAMNGALEKEKEQRRLDTIQETIRSILSEYFRHKEIKS*
Ga0115863_10357455	3300009034	Sediment, Intertidal	MPMPKFTMAIPKAMKKALEEEKKRRKLGTIQATIRSILAEHFGKD*
Ga0115863_11658194	3300009034	Sediment, Intertidal	MKMAKFTMSVPEAMKKALEEEKERRKLGTIQETIRSIL
Ga0115863_12105691	3300009034	Sediment, Intertidal	MKMTKFTMSLPEAMKKALDEEKERRKLGTIQETIRSILAEYFKSKGENL*
Ga0115863_13814743	3300009034	Sediment, Intertidal	MAKFTMSIPEAMKEALEKERELRKLGTIQETIRSILGGYFRSKERVKIVSA*
Ga0115863_16372143	3300009034	Sediment, Intertidal	MRMAKFTMSVPEAMKEALEKEREQRKLDTVQEAIRSILAEYFREQGSQG*
Ga0099827_107142822	3300009090	Vadose Zone Soil	MAAKFTMSVPGAMKVALEEERRRRKLDSIQETIRSILSEYFSGLSKR*
Ga0118735_100788612	3300009136	Marine Sediment	MAKFTMSIPEAMKEALEGEKERRRLDTIQETIRSILAEYFRNKGP*
Ga0114918_100903856	3300009149	Deep Subsurface	MAKFTMSVPAAMQEALERERERRRLGTLQETIRNILAEYFKEQG*
Ga0114921_100325853	3300009150	Deep Subsurface	MAKFTMSVPEAMKEALEREKERRRLDTIQEAIRSILAEYFRDKIL*
Ga0114921_100665442	3300009150	Deep Subsurface	MGMTKFTMSVPEAMKEALEEEMEKRKLDTIQQTMRAILSDYFAAKG*
Ga0114921_108252761	3300009150	Deep Subsurface	IPEAMKEALEKERELRKLGSTQETIRSILGDYFRSKERGKET*
Ga0114925_114778101	3300009488	Deep Subsurface	MSVPEAMNGALEKEKEQRRLDTIQETIRSILSEYFRDKEIKS*
Ga0114930_100266798	3300009499	Deep Subsurface	MAKFTMSIPEAMKTALEKEIERRKLDTVQEAIRSILADYFRDQ*
Ga0114919_103295162	3300009529	Deep Subsurface	MKMTKFTMSIPEAMREALEKERELRKLGSTQETIRSILSDYFRSKERGKET*
Ga0129297_100096133	3300010324	Lake Sediment	MARKFTMSIPESMYEALEVERKKRKLDTIQETIRSILAEYFREETRSS*
Ga0129297_101931724	3300010324	Lake Sediment	MGMVKFTMSLPEAMKKALEEEMKKRKLDSIQETIRSILSEYFSKAKE*
Ga0116200_102827412	3300010332	Marine Hydrothermal Vent	MAKKFTMSLPEEMYLALEKERRKRKLGTIQELIRFIIAEHLKEKSD*
Ga0137380_113788312	3300012206	Vadose Zone Soil	MALKFTMSVPAAMKGALDEERKRRKLDTIQDTIRSILAEYFAGKR*
Ga0137381_104908921	3300012207	Vadose Zone Soil	RRARTGILPMALKFTMSVPAAMKGALDEERKRRKLDTIQDTIRSILAEYFAGKR*
Ga0137381_113694991	3300012207	Vadose Zone Soil	MAEKFTMSVPGAMKAVLEEEKKRRKLDTLQDTIRSILSEYFAVRSKR*
Ga0137387_105718171	3300012349	Vadose Zone Soil	MAAKFTMSVPGAMKVALEEERRRRKLDSIQETIRSILSEYF
Ga0153916_126903131	3300012964	Freshwater Wetlands	MAEKFTMVVPAAMAKALDEERKKRALDNLQETIRSICSDYFRNREKR*
(restricted) Ga0172366_100281944	3300013128	Sediment	MAKKFTMSIPESMYRALDKEREKRKLDTIQETIRFILAEYLKEEKIK*
(restricted) Ga0172366_105829551	3300013128	Sediment	MVKFTMSLPKAMKEALEKERQRRKMDTLQETIRSILAEY
Ga0164310_102396852	3300014913	Marine Sediment	VAKKFTMSLPEAMYEALEKERVKRKLSSIQETIRFILAEYLKGKNS*
Ga0164311_106928101	3300014914	Marine Sediment	MSLPESMFRALEEERKKRRLDNIQETIRSILAEYFKEKASKRVI*
Ga0184633_100012675	3300018077	Groundwater Sediment	MATKFTMSVPAAMKAALEEERRRRKLDSNQDTIRSIMSDYFARLAK
Ga0190361_10820602	3300021469	Hydrothermal Vent Microbial Mat	VITRVVILMSRKFTMSLPKEMYRALEEERRKRKLDTIQETIRSILAEYFRKKEKM
Ga0190363_100012029	3300021472	Hydrothermal Vent Microbial Mat	MSRKFTMSLPKEMYRALEEERRKRKLDTIQETIRSILAEYFRKKEKM
Ga0190363_10137803	3300021472	Hydrothermal Vent Microbial Mat	VAKKFTMSLPEAMYEALEKERVKRKLSSIQETIRFILAEYLKGKNS
Ga0224506_101905212	3300022221	Sediment	MSLSEEMMKAIEEEKKKRKLGSIQETIRSILAEYFAKKS
Ga0224501_103799962	3300022223	Sediment	MSVPEAMEKALEEEKKRRKLGTIQETIRSILAEYFHQKE
Ga0212120_10122382	3300022544	Hot Spring	MAKKFTMSMPDDMYAALEKERQRRKLGTIQELIRFIISDYFKEKTT
Ga0212122_10023096	3300022546	Hot Spring	MAKKFTMSIPDAMYAALERERQKRKLGTIQELVRFIIAEYLKEKGT
Ga0212122_10128802	3300022546	Hot Spring	VAKKFTMSIPDAMYAALEKERQKRKLGTIQEIIRFIIAEYLKEKSS
Ga0212122_10430851	3300022546	Hot Spring	VAKKFTMSIPDAMYAALEKERQKRKLGTIQELIRFIIAEYLKEKGI
Ga0212122_10868562	3300022546	Hot Spring	VAKKFTMSIPDAMYAALEKERQKRKLGTIQELIRFIIAEYLKEKGT
Ga0209978_100050998	3300024263	Deep Subsurface	MGMTKFTMSVPEAMKEALEEEMEKRKLDTIQQTMRAILSDYFAAKG
Ga0209978_100629921	3300024263	Deep Subsurface	MSVPEAMKEALEREKERRRLDTIQEAIRSILAEYFRDKIL
Ga0209979_10312375	3300024353	Deep Subsurface	MAKFTMSIPEAMKTALEKEIERRKLDTVQEAIRSILADYFRDQ
Ga0209986_102997122	3300024433	Deep Subsurface	MRARKGEDRRMAKFSMTVTRAMEEALHKEREQRKLNTLQETIRSILGEYFRAQR
Ga0209986_104774161	3300024433	Deep Subsurface	TKFTMSIPEAMREALEKERELRKLGSIQETIRSILGDYFRSKERGKET
Ga0210014_11538061	3300025016	Aquifer	SEEMMKAIKEEKKKRKLGFIQETIRSILAEYFAKKS
Ga0210017_10056688	3300025021	Groundwater	MSLSEEMMKAIKEEKKKRKLGSIQETIRSILAEYFAKKS
Ga0210056_100351713	3300025022	Groundwater	MSLSEEMMKAIKEEKKKRKLGFIQETIRSILAEYFAKKS
Ga0209822_10453631	3300025092	Hot Spring	FTMSIPDAMYAALEKERQKRKLGTIQELIRFIIAEYLKEKGI
Ga0210021_11574651	3300025139	Aquifer	MSLSEEMMKAIKEEKKKRKLGSIQETIRSILAEYF
Ga0209314_100064653	3300025143	Lake Sediment	MARKFTMSIPESMYEALEVERKKRKLDTIQETIRSILAEYFREETRSS
Ga0210053_10463002	3300025845	Aquifer	LPKFTMSLSEEMMKAIKEEKKKRKLGFIQETIRSILAEYFAKKS
Ga0209237_10133893	3300026297	Grasslands Soil	MAAKFTMSVPSAMKVALEEERRRRKLDSIQETIRSILSEYFSGLSKR
Ga0209121_1000115212	3300027742	Marine	MAKKFTMSVPNSMYEALERERKKRRLGTIQQTIRFLLAEYMKEKNS
Ga0209121_100315552	3300027742	Marine	MPEKFTMSIPEAMHKALEEERKNRKLDNVQETIRAILSEYFKKQG
Ga0207433_102174382	3300027863	Hot Spring	MAKKFTMSIPDAMHAALEKERQKRKLGTIQELIRFIIAEYLKEKST
Ga0209636_100167548	3300027893	Marine Sediment	MMKFTMSIPEAMRKGLEKEKERRKLDTIQETIRSILAEYFKSNS
Ga0209636_100632004	3300027893	Marine Sediment	TMSIPEAMRKGLEKEKERRKLDTIQETIRSILAEYFKSNS
Ga0209636_103239672	3300027893	Marine Sediment	MAKKFTMSVPQSMHQALEKERVKRKLGTIQETIRFILAEYLKEKDS
Ga0209636_107180032	3300027893	Marine Sediment	MAKKFTMSTPDSMYQALEKECKKRKLGTIQETIRFILAEYLKEKNN
Ga0209636_112410571	3300027893	Marine Sediment	MKGKFTMSLSKTMLEALENERKLRKLRSLQETIRFILAEYFREKNE
Ga0272448_10743262	3300031463	Sediment	MSKKFTMSVPDSMYRALQKECQKRRLGTIQETIRSILAEYFKEEGNNTSSN
Ga0307380_113141502	3300031539	Soil	MAKFTMSVPSAMQEALERERQRRRLGTLQETMRAILSEYFKEQSPKD
(restricted) Ga0315308_12731001	3300031587	Sediment	MPMAKFTMSVPGAMEKALEEEMERRKLGTIQETIRSILAEYFGQKEKT
(restricted) Ga0315308_13348972	3300031587	Sediment	MGLAKFTMSVPDAMKEALEKERIRRKLGTIQETMRSILAEYFKEQS
(restricted) Ga0315309_10405973	3300031604	Sediment	MARKFTMSIPESMYEALEVERKKRKLDTIQETIRSILAEYFREE
(restricted) Ga0315309_12381741	3300031604	Sediment	MPMAKFTMSVPEAMEKALEEEMERRKLDTIQETIRSILAEYFGQRKNVSSH
Ga0315291_109995201	3300031707	Sediment	SLPDAMEEALEKECARRKLDTVQETIRSILAEYFKGQGSESQK
Ga0315291_110701601	3300031707	Sediment	MRMVKFTMSLPDAMKEALEKECARRKLDTVQETIRSILAEYFKGQGSESQK
Ga0315288_1000455213	3300031772	Sediment	MAKFTMSVPEAMGKALERERDRRRLDTIQETIRSILAEYFRDK
Ga0315280_100019369	3300031862	Sediment	MRMVKFTMSLPDAMKEALEKERIRRKLDTLQETIRSILAEYFKEQR
Ga0315280_100139035	3300031862	Sediment	MAKKFTMSIPESMYRALDKEREKRKLDTIQETIRFILAEYLKEEKIK
Ga0315280_100175506	3300031862	Sediment	MPKFTMSIPEAMKKALEEEMRRRRLDTVQETIRSILSEYFGQKEK
Ga0315280_100636882	3300031862	Sediment	MAKRFTMSVPEAMYNALLKEARERRLDTIQETIRSILAEYFSEKRNFQ
(restricted) Ga0315310_100199754	3300031876	Sediment	MPMAKFTMSIPEAMEKALEEEMKCRKLDTIQETIRSILSEYFGQK
(restricted) Ga0315310_101064682	3300031876	Sediment	MARKFTMSLPRSMHEALETERKRRKLDTIQETIRSILAEYFKNRNKGTL
(restricted) Ga0315310_101417042	3300031876	Sediment	MVKFTMSLPEAMKEALEKERVRRKLDTVQETIRSVLAEYFRDQR
(restricted) Ga0315310_101836772	3300031876	Sediment	MGMAKFTMSVPDAMKEALEKERIRRKLDTIQETMRSILAEYFKEQS
(restricted) Ga0315310_102411012	3300031876	Sediment	MKMVKFTMSLPDAMKEALEKERVRRKLDNLQETIRSILAEYFKGQS
(restricted) Ga0315312_100462812	3300031898	Sediment	LARKFTMSVPDSMDNALEEERKKRKLDDIQETIRSILSEYFRDKSHGGKS
(restricted) Ga0315312_10166804	3300031898	Sediment	MSKKFTMSVPDSMYRALEVEREGRKLDTLQQTIRSILAEYFSRKPKST
Ga0315294_1000176415	3300031952	Sediment	MAKKFTMSIPDSMNRALEKEQEKRKLGTIQETIRFILSEYFKTNN
Ga0315294_103508412	3300031952	Sediment	MAKKFTMSVPDSMNRALEKEKEKRKLGTIQEVIRFILAEYLEDRDS
Ga0315274_100616983	3300031999	Sediment	MSIPDSMNKALEKEREKKKLGTIQETIRFILADYLNDKNT
Ga0315274_112139591	3300031999	Sediment	MKMAKFTMSLPEAMNKALEEEKERRKLGTIQETIRSILAEYF
Ga0315296_106266521	3300032020	Sediment	MKMAKFTMSLPEAMNKALEEEEERRKLGTIQETIRSILAEYFKSKGENP
Ga0315289_103990531	3300032046	Sediment	MAKKFTMSIPDSMNKALEKEQERRKLGTIQETIRFILADYLKDKNNHIR
Ga0315289_104082251	3300032046	Sediment	MAKFTMSVPEAMGKALEKERDRRRLDTIQETIRSILA
Ga0315282_1000300026	3300032069	Sediment	MSLPDAMKEALEKECTRRRLDTLQETIRSILAEYFKEQGLEPPDRPR
Ga0315282_1000343112	3300032069	Sediment	MARKFTMSLPESMHQAVETERKRRKLDTVQETIRSILAEYFRDRNKEMF
Ga0315282_100035778	3300032069	Sediment	MAKKFTMSIPDSMNKAIEKEREKRKLGTVQETIRFILAEYLKERNS
Ga0315279_100354624	3300032070	Sediment	MAKKFTMSIPDSMNKALEKEQEKRKLGTVQETIRFILADYLKDKNNHIR
Ga0315277_100003759	3300032118	Sediment	MAEKFTMSVPDAMKAALEDERKRRKLDTLQDTIRSILSEYFAGKAKR
Ga0315277_103634341	3300032118	Sediment	SIPDAMEKALQNEMRRRKLDTFQETIRSILSEYFASHQ
Ga0315273_115233532	3300032516	Sediment	MAEKFTMSVPDAMKKALEIERERRKLDTVQETIRSILSEYFAAK
Ga0334965_0000593_24675_24806	3300033991	Sediment	MVKFTMSLPEAMKKALEEEMKKRRLDSIQETIRSVLAEYFSKV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters