Sample 3300003989

Overview

Basic Information
IMG/M Taxon OID	3300003989 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111376 \| Gp0101358 \| Ga0055473
Sample Name	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_CordA_D2
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	788892924
Sequencing Scaffolds	76
Novel Protein Genes	80
Associated Families	71

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1
All Organisms → cellular organisms → Bacteria	11
All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	2
All Organisms → cellular organisms → Bacteria → Proteobacteria	6
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3
All Organisms → Viruses → Predicted Viral	1
Not Available	20
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter → unclassified Anaeromyxobacter → Anaeromyxobacter sp. Fw109-5	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter marginalis	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina → Desulfosarcina cetonica	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → unclassified Paraburkholderia → Paraburkholderia sp. BL23I1N1	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Sedimenticola → Sedimenticola thiotaurini	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → unclassified Anaerolineales → Anaerolineales bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp. LEh25	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	USA: San Francisco Bay, California
Coordinates	Lat. (^o)	37.928627	Long. (^o)	-122.504829	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000532	Metagenome / Metatranscriptome	1046	Y
F003207	Metagenome / Metatranscriptome	501	Y
F003217	Metagenome / Metatranscriptome	500	Y
F004052	Metagenome / Metatranscriptome	455	Y
F004253	Metagenome	446	Y
F004928	Metagenome / Metatranscriptome	418	Y
F005472	Metagenome / Metatranscriptome	399	Y
F005564	Metagenome / Metatranscriptome	396	Y
F005815	Metagenome / Metatranscriptome	389	Y
F008634	Metagenome / Metatranscriptome	330	Y
F010065	Metagenome	309	Y
F011939	Metagenome / Metatranscriptome	285	Y
F014548	Metagenome / Metatranscriptome	262	Y
F015115	Metagenome / Metatranscriptome	257	Y
F015572	Metagenome / Metatranscriptome	253	Y
F016569	Metagenome / Metatranscriptome	246	Y
F016664	Metagenome / Metatranscriptome	245	Y
F016971	Metagenome / Metatranscriptome	243	Y
F020359	Metagenome / Metatranscriptome	224	Y
F025454	Metagenome / Metatranscriptome	201	Y
F029294	Metagenome	189	Y
F031502	Metagenome	182	Y
F032661	Metagenome	179	Y
F033045	Metagenome / Metatranscriptome	178	Y
F034232	Metagenome / Metatranscriptome	175	Y
F034985	Metagenome / Metatranscriptome	173	Y
F036354	Metagenome / Metatranscriptome	170	Y
F036417	Metagenome / Metatranscriptome	170	Y
F039145	Metagenome / Metatranscriptome	164	Y
F041083	Metagenome	160	Y
F041201	Metagenome / Metatranscriptome	160	Y
F042907	Metagenome / Metatranscriptome	157	Y
F042975	Metagenome	157	Y
F043429	Metagenome	156	Y
F045765	Metagenome / Metatranscriptome	152	N
F048675	Metagenome	148	Y
F048676	Metagenome / Metatranscriptome	148	Y
F048812	Metagenome / Metatranscriptome	147	Y
F050381	Metagenome / Metatranscriptome	145	Y
F051992	Metagenome / Metatranscriptome	143	Y
F052019	Metagenome	143	Y
F056029	Metagenome	138	Y
F056659	Metagenome / Metatranscriptome	137	Y
F057476	Metagenome / Metatranscriptome	136	Y
F058158	Metagenome / Metatranscriptome	135	Y
F058645	Metagenome / Metatranscriptome	134	Y
F059117	Metagenome	134	Y
F059476	Metagenome / Metatranscriptome	134	Y
F059980	Metagenome / Metatranscriptome	133	Y
F062772	Metagenome	130	Y
F063710	Metagenome	129	Y
F065246	Metagenome / Metatranscriptome	128	Y
F070127	Metagenome / Metatranscriptome	123	Y
F070129	Metagenome	123	N
F074893	Metagenome / Metatranscriptome	119	Y
F077315	Metagenome / Metatranscriptome	117	Y
F077317	Metagenome / Metatranscriptome	117	Y
F078220	Metagenome	116	Y
F080582	Metagenome	115	Y
F082775	Metagenome / Metatranscriptome	113	Y
F086605	Metagenome	110	Y
F090405	Metagenome / Metatranscriptome	108	Y
F091343	Metagenome / Metatranscriptome	107	Y
F093897	Metagenome	106	Y
F094484	Metagenome	106	Y
F099226	Metagenome / Metatranscriptome	103	Y
F099325	Metagenome / Metatranscriptome	103	Y
F100914	Metagenome	102	Y
F101187	Metagenome / Metatranscriptome	102	Y
F102425	Metagenome	101	Y
F105216	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0055473_10000300	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7533	Open in IMG/M
Ga0055473_10001753	All Organisms → cellular organisms → Bacteria	4495	Open in IMG/M
Ga0055473_10002388	All Organisms → cellular organisms → Bacteria	4002	Open in IMG/M
Ga0055473_10002701	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	3837	Open in IMG/M
Ga0055473_10002874	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	3747	Open in IMG/M
Ga0055473_10005845	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	2885	Open in IMG/M
Ga0055473_10007200	All Organisms → cellular organisms → Bacteria → Proteobacteria	2667	Open in IMG/M
Ga0055473_10008208	All Organisms → cellular organisms → Bacteria → Proteobacteria	2535	Open in IMG/M
Ga0055473_10008252	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2530	Open in IMG/M
Ga0055473_10021266	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	1738	Open in IMG/M
Ga0055473_10021747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1723	Open in IMG/M
Ga0055473_10021913	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1717	Open in IMG/M
Ga0055473_10026155	All Organisms → cellular organisms → Bacteria → Proteobacteria	1600	Open in IMG/M
Ga0055473_10029538	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1521	Open in IMG/M
Ga0055473_10033389	All Organisms → Viruses → Predicted Viral	1445	Open in IMG/M
Ga0055473_10034926	All Organisms → cellular organisms → Bacteria → Proteobacteria	1419	Open in IMG/M
Ga0055473_10044541	Not Available	1281	Open in IMG/M
Ga0055473_10048435	All Organisms → cellular organisms → Bacteria	1236	Open in IMG/M
Ga0055473_10059460	Not Available	1129	Open in IMG/M
Ga0055473_10066144	All Organisms → cellular organisms → Bacteria	1078	Open in IMG/M
Ga0055473_10078713	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	997	Open in IMG/M
Ga0055473_10079046	All Organisms → cellular organisms → Bacteria	995	Open in IMG/M
Ga0055473_10087755	Not Available	949	Open in IMG/M
Ga0055473_10092841	Not Available	925	Open in IMG/M
Ga0055473_10105721	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	872	Open in IMG/M
Ga0055473_10108393	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter → unclassified Anaeromyxobacter → Anaeromyxobacter sp. Fw109-5	862	Open in IMG/M
Ga0055473_10109546	All Organisms → cellular organisms → Bacteria	858	Open in IMG/M
Ga0055473_10110695	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter marginalis	854	Open in IMG/M
Ga0055473_10118217	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina → Desulfosarcina cetonica	828	Open in IMG/M
Ga0055473_10129694	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	794	Open in IMG/M
Ga0055473_10134706	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	780	Open in IMG/M
Ga0055473_10140959	Not Available	764	Open in IMG/M
Ga0055473_10145056	Not Available	754	Open in IMG/M
Ga0055473_10151792	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → unclassified Paraburkholderia → Paraburkholderia sp. BL23I1N1	738	Open in IMG/M
Ga0055473_10152694	Not Available	736	Open in IMG/M
Ga0055473_10163591	All Organisms → cellular organisms → Bacteria	712	Open in IMG/M
Ga0055473_10172961	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
Ga0055473_10188452	All Organisms → cellular organisms → Bacteria	666	Open in IMG/M
Ga0055473_10189566	Not Available	664	Open in IMG/M
Ga0055473_10190426	Not Available	662	Open in IMG/M
Ga0055473_10192945	Not Available	658	Open in IMG/M
Ga0055473_10198732	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina → Desulfosarcina cetonica	649	Open in IMG/M
Ga0055473_10200792	Not Available	646	Open in IMG/M
Ga0055473_10201281	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	645	Open in IMG/M
Ga0055473_10201948	All Organisms → cellular organisms → Bacteria → Acidobacteria	644	Open in IMG/M
Ga0055473_10203903	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	641	Open in IMG/M
Ga0055473_10204773	Not Available	639	Open in IMG/M
Ga0055473_10207905	All Organisms → cellular organisms → Bacteria → Terrabacteria group	635	Open in IMG/M
Ga0055473_10209535	Not Available	632	Open in IMG/M
Ga0055473_10226063	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	610	Open in IMG/M
Ga0055473_10230267	All Organisms → cellular organisms → Bacteria → Proteobacteria	604	Open in IMG/M
Ga0055473_10232771	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Sedimenticola → Sedimenticola thiotaurini	601	Open in IMG/M
Ga0055473_10236099	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	597	Open in IMG/M
Ga0055473_10239641	Not Available	593	Open in IMG/M
Ga0055473_10240392	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	592	Open in IMG/M
Ga0055473_10249246	Not Available	582	Open in IMG/M
Ga0055473_10251750	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	579	Open in IMG/M
Ga0055473_10264914	Not Available	565	Open in IMG/M
Ga0055473_10267990	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	561	Open in IMG/M
Ga0055473_10268000	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
Ga0055473_10268648	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	561	Open in IMG/M
Ga0055473_10276536	All Organisms → cellular organisms → Bacteria → Acidobacteria	553	Open in IMG/M
Ga0055473_10277106	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	552	Open in IMG/M
Ga0055473_10282087	Not Available	547	Open in IMG/M
Ga0055473_10287431	All Organisms → cellular organisms → Bacteria → Proteobacteria	542	Open in IMG/M
Ga0055473_10287785	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
Ga0055473_10290830	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	539	Open in IMG/M
Ga0055473_10296481	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon	534	Open in IMG/M
Ga0055473_10297930	Not Available	533	Open in IMG/M
Ga0055473_10309336	Not Available	522	Open in IMG/M
Ga0055473_10313487	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	519	Open in IMG/M
Ga0055473_10314349	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium	518	Open in IMG/M
Ga0055473_10326833	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → unclassified Anaerolineales → Anaerolineales bacterium	508	Open in IMG/M
Ga0055473_10326872	Not Available	508	Open in IMG/M
Ga0055473_10332869	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	503	Open in IMG/M
Ga0055473_10334217	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp. LEh25	502	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0055473_10000300	Ga0055473_100003006	F008634	MYGQGRELEIGNATSAMLISLLQALVDKDILTNVEVRALLTKAASDLGPHEYTAPVKGAIGIILNDILPKFPETGGD*
Ga0055473_10001753	Ga0055473_100017535	F020359	MSARKKAGTKTPEEFWSKVLAAPKVKRILEKRGFDAEAFRRDYEADTSRGPRAPKRPSKQEMDAVEAFQRTGDFDALKESLGTRSTAVANTALRRVLQFKALGGVKTVRRRSGAVE*
Ga0055473_10002388	Ga0055473_100023883	F099325	MWRDVRRVLARLWRWSQKGRAERRAAETRARFWADAREGQLEAEARSRS*
Ga0055473_10002701	Ga0055473_100027013	F074893	MISSRLQAISDNGSLTIRINGPFDLLLTLALRESCHDSGTTYRRYIVDFKHVSIVRDSGLALLLMLKRWASRAGARLYVVNGDRELMNRCLTLGIRPA*
Ga0055473_10002874	Ga0055473_100028741	F041201	LVQDRGGAELKTGGILLYVEDFKRGPNKDIGPKDFFEMGSSKI*
Ga0055473_10004331	Ga0055473_100043311	F080582	LNFNVNWMGTALPAENKQGMMDSQATNLELLKDVCENNPA*
Ga0055473_10005845	Ga0055473_100058452	F011939	MPEMKVKLIEETLRKEVQKIDKSVQVVAVEQSKKKDFYRATLLKDGKSGSAELKKDVIKQYLSQEGRGKELRKALGKAVSHLSIKYKR*
Ga0055473_10007200	Ga0055473_100072004	F099226	MANIAKIFTVAVTLVVGTGAISGIALANTNPLYPDRLKNPHVSLPSDRVGSGIPSPYRIGGRIDEPSVSLPSPGVGSVIPAPYRIGN*
Ga0055473_10008208	Ga0055473_100082085	F048675	MDSDQALFSEYYAAAQSLKSPWTRLASTYGCIMVVLSKKTLTIKPHWFAKWLINLLALDLSQKIPITNIKCVTKMGMWFGYGKVELQFVTIHGENQRILLYLKKYQEFVNKTKDAMN*
Ga0055473_10008252	Ga0055473_100082524	F016971	MNQVAQHLPAEGKCAVEVVVYIKKDLGEEQQNLVISALQQTDGIMGAEFCVMRNHLVLAKYDKEIMSSQDVLKSFNSLNLEAKLI
Ga0055473_10013594	Ga0055473_100135941	F101187	DIVSKTQCELDYACISGKAVCNVELYEYRDVQLLRCRDERACAYRKNYQGLSICTCPVNRASAGLN*
Ga0055473_10021266	Ga0055473_100212662	F070127	MHLTSNIPCNTIYLLSVQKVISMKKLNFSITINLSLTLREDEAHINIKDVDLIPAVVSLPYRLNSQDRTDSSKTEKKTVHDIILQTAKKYVIDTGQNKFTGAKLFNLSLLDHPRLKRNTFAAQVIAAAPTHPSHRHYSNQKDYFTYLGKGNYKLNQKYLEITEDQILPPSDRVR
Ga0055473_10021747	Ga0055473_100217472	F032661	MTERRKVERRRYEAHTEFPAIDHQGDFIMSERRHLSTRRAFDIFVDDVDLPTMFIDINKQMY*
Ga0055473_10021913	Ga0055473_100219132	F014548	MSALGHLWTAPWQVLSYGSAGLVGAVMSGLLVRHWWPLALMLSADQIPIESTHSMMR*
Ga0055473_10026155	Ga0055473_100261552	F051992	LEEILDERVVSSRSRVNCRGVKRKMSNYKLRPRKRQHTRCLKISVRIRNVK*
Ga0055473_10029538	Ga0055473_100295382	F059980	MGFSGGFEQGKPDTALPELKNVIPVKVKGVNPQITFYRG*
Ga0055473_10033389	Ga0055473_100333892	F029294	MSQETGETRNAIIEDDNKQLQAILDANKRRSEPYWIVLFAKPSKQSVDGKPTLVKHMKAYPVKPQSQVGMVCGRVDNMKGTIDWEVNMPQKPFDFDALQGLGATPCDEMVVETTTIPGAYITK*
Ga0055473_10034926	Ga0055473_100349263	F086605	MVDPWINDTANPVPGDVDNYICPIAAVFTDGAFGATESVVSV*
Ga0055473_10044541	Ga0055473_100445412	F005564	MIEPSKQQVVTEKDMHKLIIGLMVVFFLGDPSFQTLVRLGEMKTYMVAAAIALVSTPFVVSQIDG*
Ga0055473_10048435	Ga0055473_100484351	F050381	MKRLIVILSIILIPTIVFANFSIKLDNNTAKKMFYLLYWVDHTYDWPQPFNLAGGELQAKESIDLRSNYQNGKYFVVWSDNGDWQNKVMLTVNDDVKSVIVTPIKSRMKK*
Ga0055473_10059460	Ga0055473_100594602	F033045	MKTSELELPQHLYTDETSSHCGAMTRLIAPDKLISWAEEGRGDAIARFCHTVYERKLASIDAWESDRILQLEDEWMVAGNDEDMSGCKYVNVKHYHTTREDVAREAELKRASVKERMIEHQTAIEDLVQEAREFISAYVAQQEEGDMLAYLLAIVVIVAAGYAIFS*
Ga0055473_10066144	Ga0055473_100661442	F020359	MAVSKRTVSGKTPEEFWSKVLAAPKVKRVLEKRGFSPEAFQRDYEADTSRGPRVPKRPSRTQIDAVEAFQQSGDFEALKRALSTESSAVANSTLRRVVQFKALGGVKTVRRRSGT*
Ga0055473_10078713	Ga0055473_100787131	F045765	MKYHSSKGESTTTIKIDARLYDLLRKFCDKEGRRLKDFVEDALENAIYTEESIKILNEEIKSLKKKEAKYDYAFRRGFQKGFYIAFCALHGQILLEPDDEDFEILKNDPFRISKGAQLDLFRIPDTRGRGH*
Ga0055473_10079046	Ga0055473_100790462	F057476	MSEDEEPIEPSEASLAEIPEQDFSQAIRPNRYANLRGAFQHAVFVGPEVWEHFGSEERILEVLRLLVDIANKRSA*
Ga0055473_10087755	Ga0055473_100877552	F105216	IEMPILRSLAMCCFAILAAACSDKAPKPWSTAEMNTLSDQFAHIAEAYAVVDVCIPMIDANKDAKRDVIAEIKIRRYSQLSQMNTEAEVARFLAFHRQHGGTDEQAAALEQIYRDAYRTATQQLKSIDNCAETVTDYVNTILQTRVEPVP*
Ga0055473_10092841	Ga0055473_100928412	F056029	MSVLMSWARSTLANVEQSLGRSDRWFDRMLAGVLVLLAFAVAFLFFAT*
Ga0055473_10105721	Ga0055473_101057212	F004928	MVQALHSIESEPANTVEIVVHISENLGETKRRGLVAVLENEDSIVSAEFCPLRYHLMLVRYDRDIASSQDVLASVKAQNYNARLIGPV*
Ga0055473_10108393	Ga0055473_101083932	F003217	MSDQPFVVQKVEWYQFRTPEGTPFLVMVSSLPNGFFTAVPCQVEMKQAQHGLMALAQTGEEALAQLQTTLAGKAVEDIFAPE*
Ga0055473_10109546	Ga0055473_101095463	F056659	MSNETATMQVFSGSAITPEELLVLAEFAAPSHFVSDDHLRDAADNLAEWTDHRSSTIIAALHLAARRDVHPTVIQLLRAARS
Ga0055473_10110695	Ga0055473_101106951	F041083	MQVAVLLIRKIVGSLSKQDRQDVAQAFLQNDDSNPTYKGFKYMLQVAEQFNVSSALVSYLNAEVAGQLGGMSQGAIFNSWIEARIDSAIGQLRARCLEEAERKSSIW*
Ga0055473_10118217	Ga0055473_101182171	F077317	MPLVMEELITKSSDETSWYENEQPIREFLESFRKAEILEADDQAEELSWINVVKKSNQISS*
Ga0055473_10129694	Ga0055473_101296941	F000532	VALIKTRLGVEALTTPGKTGQFDVVVDGEKVAERGGNWFTRSFGAGYPDFEGVVDQLEKQGAGAR*
Ga0055473_10134706	Ga0055473_101347062	F059476	VRTMAEQGNRQQSTRMVVTIVLLVLLALGFFAASFFVLT*
Ga0055473_10140959	Ga0055473_101409591	F059117	LSASGSRFVAIWASHEARARLWFRLFLLTSAALALSLVTTIRVWSRPREVVRIGCDGIPQVVRLDNAAYSEPDAREIRAFATQFAVFYARSDSYSILNDLVWCANRMAPELRERFKRAVRGTPERPGVVSVIEKLKRRTQIDPASLEIEVDKGPYPWKVQVKGLRQVIGEEGPGESFELEMSLVRASREEQLEGLLVWGIRAKGEPIDTVLAAVSAEGGR*
Ga0055473_10145056	Ga0055473_101450562	F005564	MHKLVIGLMVIFFLGDPSLQTLAWLGEMKLYIVAAAIAMVSIPFVISQLDG*
Ga0055473_10148918	Ga0055473_101489181	F048812	LRRHRFESYLDKIFDWTPSVAAMAEGRQNPSHPWPKVFDAVFLGSACQFGPVHRIEAECKAGVLEKRIGRLSEDTIGYALQRQAPEE
Ga0055473_10151792	Ga0055473_101517922	F036354	VIAKRKGVPATEGLKEAWNKRTSRWTRTGYEAYGTGRVGV*
Ga0055473_10152694	Ga0055473_101526941	F042907	MTDEMRVEAEEKLFNDLRDEPCIVCGDPYLYVLGSYTPEGPKNPKNCKDKAPVLYYTLCKTCFNNGRIPTALIESAYKSKFGKIAA*
Ga0055473_10163591	Ga0055473_101635912	F094484	GLMAAAANTAEAEGRRMIVFALYGAAGTTGSTATTTVIDFTTQVACREARDALRNAKAPGFGLFATCVEP*
Ga0055473_10172961	Ga0055473_101729612	F010065	LPSRGRLKRVTMRGESGISLTGLYVCGAIALVMLVLKLSVIDTWSWWRVMLPLGIIVGFNVTNMVVAFIYLSFAHIPERPDGDEAEVLEPHTLDAHYVAAMIFFVVFGDNLVRWIEGSETSRWFWLFSGKIEALAVFGTLSVVALFSYWSRLGRVLKASG*
Ga0055473_10188452	Ga0055473_101884521	F094484	MKQLALALLISGGVLSVADAAHAEGRRMIVFALYGAAGTTGSTATTTVIDFTTQVACREARDELRRNAKAPGFGLYATCVEP*
Ga0055473_10189566	Ga0055473_101895661	F004253	MTHRQSSNKQLQRAVTRRRGDGASAPFHYALAPRITRQRAAAELRRYT*
Ga0055473_10190426	Ga0055473_101904261	F070129	SGRTKEGGKMQYSATTEALLQAIKHDVKERVDQIVDEAEYAAMTLESEQHVDQVLEQALLLVEEALAEAAHAMAREIHRERAS*
Ga0055473_10192945	Ga0055473_101929452	F039145	LDLSSFIEVLQENGVDGSLTLRGPVNEDMEYVAEYAIAKYSSTRIISLFKCKDAEKAAANLAEALKNPKLSGQASNGTFSMAATFYPPDEKAVEKIKAIFLVHEFE*
Ga0055473_10198732	Ga0055473_101987322	F077317	MEEPLIKQTDETVWYENDQPIQEFLESSRKPAVLEVNHQAEEPSWLKIIQKSIQI*
Ga0055473_10200792	Ga0055473_102007922	F099226	MTNIAKIFTVAATLVVGTSAVSGMALANTNPFVPDGLEGSSVSVPASKVGSGIPTPYRVGNLADEPSDSLFRSPGVGSGIPAPYRLDN*
Ga0055473_10201281	Ga0055473_102012812	F048676	YSRLCGTASDAVDVVKLEIPQGLKLLKFKMSEYLKDIVKLTISKI*
Ga0055473_10201948	Ga0055473_102019481	F005472	MWQPTRFQWWLLLAVALFIVVAWPPRDDKSLAVKLVNWAVDPWDTLPVLPGPLPMRFGDDPNAVLVHDLETQRYDQLYRRGGWTRVRLELKVTDDPLEAGTERGLLTVLGVVTAFVAWRWSGRES*
Ga0055473_10203903	Ga0055473_102039031	F020359	MGVGKRTRQKTPEEFWSKVLAAPKVKRILEKRGFDPEAFRRDYEADSSRGPRTPKRPSKQQMDAVEAFQRTGDFDALKSSLGTESAAVANSALRRVLQFKALGGVKTVVRRRPGSSE*
Ga0055473_10204773	Ga0055473_102047731	F052019	ASEHATFWVPRPGTPLRGTALMGLHADPVLEVPAAARYVLENVGHGTQPSFVFSADNPDLAHALERPERSFTAALGVPFRTPAGLQGIALFYYDADAARPGASVLEHLAEMPRALSAALELAATLTTVKAAERALELSLAGTASLRGLEDVMRAVEELRDGLGAIRNRPDAPAWFVEQFTRLAPTLGSALTDGRSLLAFSRGEIQCETLYVE
Ga0055473_10207905	Ga0055473_102079051	F043429	VTGRVVQAEYMFDRHAATDLSVAYTILVPQRRARVQPASTEGGPRDDKRGNLC
Ga0055473_10209535	Ga0055473_102095351	F058158	MAQIMIDKQKSYKSDFTKTEQDNRDIWELHLKEREHMLAQISKYRRKNRARDWIELILMIGFIYYMLYDMYKAGDLDTIIKFLKYSIV*
Ga0055473_10226063	Ga0055473_102260632	F016664	MDQAINRVQAARESSNVVEIVVHVSENLDDQQRRDLVAALEQEDGIVSAEFCPLRYHLMLVRYDRDRNSSQDVLQAVGTQKIQARLIGPI*
Ga0055473_10230267	Ga0055473_102302672	F005815	MTMNVTHLTTYWTAGEAATAIDFLDTLRDVLWETYGEQITRMHREACHDHIRDTNQCEFEFDDEIPF*
Ga0055473_10232771	Ga0055473_102327711	F062772	MSLNGIWSCELGGAYGWEPIGTLFLKDGHIQGGGRNHYTLGSYKLKGDGAVLHIELNQYGKKRTLFGQKSEQVCLTVKTSLDNDKMIGEATLPGHSEYGIFVRFKRRADLSEEKTR*
Ga0055473_10236099	Ga0055473_102360991	F078220	LDFESGDDYVYNVFEALIDVVHGEKTKKLQLAKCLKCGRLNSFRPKSKSMQLNALYCKHCGSMISFGIRGKDLKFGESAEIFCENCEDDCRKCRINKLANENLHKR
Ga0055473_10239641	Ga0055473_102396411	F058645	GKGHQFSNVSLSGNLRVTPTAWAFVSYDGRRNYRYYRNRIVPEEVFDDLLHQGLRAGLNLARPGGFGASASFGMRLKESDPRHPELDVANAYSFNAGLRHSNLFSSGLSAGVDGSGFTNGYTEGGLLSAHLGVRFESGHSLDFSYGYSLYNVIETQEDRTTQWLRFMGRAELGRRFYVLGDFEYDAGDDLQGPRGFF
Ga0055473_10240392	Ga0055473_102403921	F025454	MISEILEEAGIDRARARAVRRQLLEGVMLLCQWQLERLEQAESPRRGGKAGRARR
Ga0055473_10248571	Ga0055473_102485711	F100914	MQILFQFDVRTIALFIGMTFFVQASVIGAQAFLIRELKQYRGVGAAVLANLCVASGVMLRLYTDRLPGFFTLILSNILLLIAIGIFYVALSQFTGLTYSKALVIGVIVVVLCFLT
Ga0055473_10249246	Ga0055473_102492461	F004052	MRIFTATFQLALVTLLFSCDQQHSASEIDPVLGLECYDSHRATLLPGTQYEGIEKLADNRLTIKIMNGVDVVTLDCKLKTDGTLQRIEN*
Ga0055473_10251750	Ga0055473_102517502	F036417	LRMVYFARIPLRRCIPTVIVRLATPDGEVAFRARWRSTPLELQRMILFRLRRGRPLWFEDEFGHDLCFRADAIHGAVVDGRTRLAGVK*
Ga0055473_10264914	Ga0055473_102649141	F077315	QVWVLLLLGLLIPAQAAEALKTDVLPQAQDTLERLEQQLATARTATAQELKSIKKEIATVRSSAQDCVQQAQPEIELLDSQLAILQPEPPKDTQAKTAEETQPAEQPDAPVSPAIARQLQDLQGRKASLEGRIATCKLMLLSSNDLNSKVDDYLHSLQTRQLLARGPTLVSVLQANLDERERWLDLTS
Ga0055473_10267990	Ga0055473_102679901	F090405	MKSALAFVFAIGLLVPGIAASDPSDCGRLMYQITHFEGMVDRAEALGRDDWAEKTQRHVDLLETRLADRCPAFSARDEQQEAARQTALLLKMAATAAAKFFTLGMY*
Ga0055473_10268000	Ga0055473_102680001	F016569	MCAYHWSMNDDKTMSAVTPNMVVGVNDKTNRAALGGRYDTQFLETNFPKRYFTIYQLSHMSD*
Ga0055473_10268648	Ga0055473_102686481	F090405	ALAFVFAIGLLVPGIAASDPSDCGRLMHQINHFEGMVDRAEALGRDDWAEKTQRHVDVLETRLADRCPAYSARDEQQEAARQMALLLKLAAKAATKFFTLGMY*
Ga0055473_10276536	Ga0055473_102765362	F015572	DWVFSTGSATALASRGISKVGPNALTIGEELTVTFQPARNGAPLGGFLSATRADGTVLRNSGGN*
Ga0055473_10277106	Ga0055473_102771061	F034985	TSTGPGGRIRIREGEEARILPGAPASAELWSRGVLPLRLRSETRHHARPAFPGTAVVIGEDTFEVLSQMELTEANLVLYRLRAWPEGETVRDRVVYGGSFVRAVEEGRENARRRARARPWRFLLYPLAGALPEERQVRVCERLGLYSVTATLVSGLCESLGVLAAITLFARGADTGEAAALVLI
Ga0055473_10282087	Ga0055473_102820871	F105216	MPTLRSLTLCCFAILAAACSDKAPEPWKAAEMNRLSEQFGHIAEAYAVVDTCIPMIDADKDAKRRVISKIGVRHYSKLSQLNTEAELAKFIAYNRESGGTDEQAATLERIYRESHRAATQLLTSVDNCADTVSDYANTI
Ga0055473_10287431	Ga0055473_102874312	F042975	VSRDEIVRLARERGALDEARVLAEQYAAAARGDLMVFEPSSYRDALEALPGFILARDH*
Ga0055473_10287785	Ga0055473_102877852	F034232	AREPYERPRVVKVVVVAEEMAVTGCKTPREVRGPTLGCQRTNCRRIGS*
Ga0055473_10290830	Ga0055473_102908301	F015115	MNGKRAWAILGAVAAICALATATPAQDSGRTAVTDIRQEGDATSTRLVVECTGPLAYTYYSPDPLTLVVDIPEVDASQMPARIDVGTREVES
Ga0055473_10296481	Ga0055473_102964811	F093897	MKLGFYISMGVAIGALVVGFALLNDIQQEKDSEAVWIQKIPTQCNDVWNTEYNEYYEINPEMKEVSSEESKAILETIIKNHYENQGVGILDLNLELNYYEGARCEACSCLGWDRLSIQISQDDLESIPASEGWEVLN*
Ga0055473_10297930	Ga0055473_102979301	F065246	RRFALRETPVFQESGGRRGLIGRQKCRRSNRVPKNANVRVLAQSGDWCSVDIDEDGKADGYIRTSDLTSDLATMPPWRPS*
Ga0055473_10309336	Ga0055473_103093361	F099325	MWKRMRDALFRFWRWSQKSPAERRAAKARARFWVEVREGQLEAKAHSRP*
Ga0055473_10313487	Ga0055473_103134871	F102425	MPEPIAPYHEALPDLDRELTERGNLGVIVLDASPLADIEDKYGLTAYEEVRQQVLADIEAARGKDYRAGDILCLDRPRGLRFLFFLDRKRRRNVPMSVADLRAARARVLSSLVPGLARRGFS
Ga0055473_10314349	Ga0055473_103143491	F091343	GEGIMANEVSANSDAVQHAALWLIGPDMPGLLRMGARFVSNHNGNIDKDIADKFGEKAVVFLSITASPPDISQMNADIDKLKRASRCGVVFQAMQAPTIPPGFKEDLYGFDIVTDDAVGLIAELTELVADYGMMIVGHTGERRVIPGPVPRVQGGQKFVVSVPHEFDHIGFT
Ga0055473_10326833	Ga0055473_103268331	F031502	RRYKNDMPSVPFKDSNGATIKECRRKIPDRRIADIQVEWLDTEWIDIYQ*
Ga0055473_10326872	Ga0055473_103268721	F082775	MSEPDILYPAIFVFSMLLIGLLLTMWEFSRLYKRQQQKVENDKRFTGLDSRVYRE
Ga0055473_10332869	Ga0055473_103328691	F003207	AAPDRFIAWCKQEEASIEQQLELMKAGKVRTGEDIGAGWIDTTAQSIERAEVRLAELRDFLTEAGKADVIRPEDL*
Ga0055473_10334217	Ga0055473_103342171	F063710	MKKPRQRSLRIRVEHEPNRFSDDCLERIYEQLHPTKSRKVTPDKNNKQGEVEPQKGKGGQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300003989: Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_CordA_D2

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences