Sample 3300003966

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300003966

3300003966: Enrichment cultures from Harmful Algal Blooms in Lake Erie HABS-00-39862

Overview

Basic Information
IMG/M Taxon OID	3300003966 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0113966 \| Gp0109824 \| Ga0063591
Sample Name	Enrichment cultures from Harmful Algal Blooms in Lake Erie HABS-00-39862
Sequencing Status	Permanent Draft
Sequencing Center	University of Michigan
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	331374827
Sequencing Scaffolds	0
Novel Protein Genes	2
Associated Families	1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Cephalotes Varians Microbial Communities From The Florida Keys, Usa
Type	Host-Associated
Taxonomy	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Cephalotes Varians → Cephalotes Varians Microbial Communities From The Florida Keys, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater lake biome → glacial lake → microbial mat material
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Lake Fryxell, Antarctica
Coordinates	Lat. (^o)	24.6333167	Long. (^o)	163.119356	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F058681	Metagenome	134	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0063591_101905	Ga0063591_1019052	F058681	MVKGLHTMYLMPNVRAKLPAEAGAVSLVRDDAPCAADQAYGACRSGSA*
Ga0063591_102082	Ga0063591_1020821	F058681	VNMLRRSRVRPNVRAKLPAEARSVSLVRDDASMAADQAYA

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