Sample 3300003715

Overview

Basic Information
IMG/M Taxon OID	3300003715 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0053062 \| Gp0095690 \| Ga0048256
Sample Name	Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - N08B_Dec13 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	10898590
Sequencing Scaffolds	2
Novel Protein Genes	2
Associated Families	1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Rhizophoraceae → Rhizophora → Rhizophora mucronata	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Serpentinite Rock And Fluid Microbial Communities From Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) And Ligurian Springs (Italy)
Type	Environmental
Taxonomy	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Serpentinite Rock And Fluid → Serpentinite Rock And Fluid Microbial Communities From Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) And Ligurian Springs (Italy)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → planetary subsurface zone → rock
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline)

Location Information
Location	USA: California, McLaughlin Reserve
Coordinates	Lat. (^o)	N/A	Long. (^o)	N/A	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F002654	Metagenome / Metatranscriptome	539	Y

Family

Category

Number of Sequences

3D Structure?

F002654

Metagenome / Metatranscriptome

539

Scaffold	Taxonomy	Length	IMG/M Link
Ga0048256_103583	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Rhizophoraceae → Rhizophora → Rhizophora mucronata	660	Open in IMG/M
Ga0048256_103935	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Rhizophoraceae → Rhizophora → Rhizophora mucronata	526	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0048256_103583

All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Rhizophoraceae → Rhizophora → Rhizophora mucronata

660

Open in IMG/M

Ga0048256_103935

526

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0048256_103583	Ga0048256_1035831	F002654	KVGCQKGNSPEQVFKVPKFLLSESKEVFKPYNQEIGLEAAIF*
Ga0048256_103935	Ga0048256_1039351	F002654	MLNYQTFNDKVVCQKGNSPEQVFKVPKFLLSESKEVFKRYNQEIGLEAAIF*

Scaffold ID

Protein ID

Family

Sequence

Ga0048256_103583

Ga0048256_1035831

F002654

KVGCQKGNSPEQVFKVPKFLLSESKEVFKPYNQEIGLEAAIF*

Ga0048256_103935

Ga0048256_1039351

F002654

MLNYQTFNDKVVCQKGNSPEQVFKVPKFLLSESKEVFKRYNQEIGLEAAIF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300003715: Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - N08B_Dec13 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences