NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300003247

3300003247: Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_03_M0_10



Overview

Basic Information
IMG/M Taxon OID3300003247 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0099541 | Gp0089022 | Ga0008465
Sample NameAmmonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_03_M0_10
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size66680935
Sequencing Scaffolds29
Novel Protein Genes33
Associated Families32

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → unclassified Rhodobacterales → Rhodobacterales bacterium HTCC22551
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales1
All Organisms → Viruses → Predicted Viral2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae1
Not Available11
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp. KYW13332
All Organisms → Viruses1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Ulvibacter → unclassified Ulvibacter → Ulvibacter sp.1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → sulfur-oxidizing symbionts → Candidatus Ruthia1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Jejuia → Jejuia pallidilutea1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → intertidal zone → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationMonterey Bay, California, USA
CoordinatesLat. (o)36.25Long. (o)-122.2099Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001488Metagenome / Metatranscriptome686Y
F004631Metagenome / Metatranscriptome430Y
F008782Metagenome / Metatranscriptome328Y
F009300Metagenome320Y
F011489Metagenome290N
F013089Metagenome274N
F014804Metagenome260Y
F016596Metagenome / Metatranscriptome246Y
F022880Metagenome212N
F034067Metagenome / Metatranscriptome175Y
F035480Metagenome / Metatranscriptome172Y
F035779Metagenome / Metatranscriptome171Y
F038148Metagenome / Metatranscriptome166Y
F038191Metagenome / Metatranscriptome166Y
F045111Metagenome / Metatranscriptome153Y
F046200Metagenome / Metatranscriptome151Y
F047320Metagenome / Metatranscriptome150Y
F054413Metagenome / Metatranscriptome140N
F057667Metagenome / Metatranscriptome136Y
F058116Metagenome / Metatranscriptome135N
F059983Metagenome / Metatranscriptome133Y
F063740Metagenome / Metatranscriptome129N
F067697Metagenome125N
F070883Metagenome / Metatranscriptome122N
F071304Metagenome / Metatranscriptome122Y
F077326Metagenome / Metatranscriptome117N
F084730Metagenome / Metatranscriptome112Y
F093867Metagenome / Metatranscriptome106N
F095418Metagenome / Metatranscriptome105N
F097398Metagenome / Metatranscriptome104Y
F098686Metagenome103Y
F099286Metagenome / Metatranscriptome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI26116J46587_1000176All Organisms → cellular organisms → Bacteria11045Open in IMG/M
JGI26116J46587_1000228All Organisms → cellular organisms → Bacteria9643Open in IMG/M
JGI26116J46587_1000968All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → unclassified Rhodobacterales → Rhodobacterales bacterium HTCC22553821Open in IMG/M
JGI26116J46587_1001178All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales3352Open in IMG/M
JGI26116J46587_1001890All Organisms → Viruses → Predicted Viral2551Open in IMG/M
JGI26116J46587_1002097All Organisms → cellular organisms → Bacteria2399Open in IMG/M
JGI26116J46587_1002324All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae2263Open in IMG/M
JGI26116J46587_1003090Not Available1923Open in IMG/M
JGI26116J46587_1005841All Organisms → cellular organisms → Bacteria1304Open in IMG/M
JGI26116J46587_1006779Not Available1195Open in IMG/M
JGI26116J46587_1007311All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp. KYW13331141Open in IMG/M
JGI26116J46587_1007900Not Available1090Open in IMG/M
JGI26116J46587_1007960All Organisms → Viruses → Predicted Viral1087Open in IMG/M
JGI26116J46587_1010528All Organisms → Viruses925Open in IMG/M
JGI26116J46587_1011160All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp. KYW1333893Open in IMG/M
JGI26116J46587_1011528All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium877Open in IMG/M
JGI26116J46587_1011835All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Ulvibacter → unclassified Ulvibacter → Ulvibacter sp.864Open in IMG/M
JGI26116J46587_1012041All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → sulfur-oxidizing symbionts → Candidatus Ruthia856Open in IMG/M
JGI26116J46587_1012124All Organisms → cellular organisms → Bacteria853Open in IMG/M
JGI26116J46587_1013122Not Available816Open in IMG/M
JGI26116J46587_1015546Not Available741Open in IMG/M
JGI26116J46587_1016640Not Available712Open in IMG/M
JGI26116J46587_1016698Not Available710Open in IMG/M
JGI26116J46587_1016935All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Jejuia → Jejuia pallidilutea705Open in IMG/M
JGI26116J46587_1017200Not Available699Open in IMG/M
JGI26116J46587_1018719Not Available666Open in IMG/M
JGI26116J46587_1019135Not Available658Open in IMG/M
JGI26116J46587_1022474All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta601Open in IMG/M
JGI26116J46587_1031079Not Available500Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI26116J46587_1000176JGI26116J46587_100017614F014804MNEEWLDNILDGEPSGITDTQWLIIENNICNTSLPSRTIEDILERLNHLTQLEAEEIITTINENTHERDTRKQWERMFKEGMFEHRDL*
JGI26116J46587_1000176JGI26116J46587_100017615F016596LINTFTKMTNQYSLDKIRKSRNEFEALLRIYGVSNTLLSKVMVVNYATSKKFLADPTRVRFIHAKRLADYLGLQMQDIVDTIVYDLK*
JGI26116J46587_1000176JGI26116J46587_100017618F009300MIKWKNTTYPSTFIRLSDELAKVRSMLSADVYNPDTEKYRGDQEHQIQSLGIFAELVARHLMENNKGIRYKAAPIIESRPVVEADIVIEGIDEYNYVDVKGIKSAGNALRVNFKAHNNPKKKITHYLFIQPLNGLYARFCWFTHEQVSKWTVVMSTYTECYELEIQKHN*
JGI26116J46587_1000228JGI26116J46587_100022812F070883SMETLEYLAYAGIFFGMLVSAFTIDWKDKKTYRNFLIILTVIAAGTGILFLIDF*
JGI26116J46587_1000968JGI26116J46587_10009686F059983PCITQKARLYLPETTQLFTQLWASLQSGEADGGVVSHMXSRI*
JGI26116J46587_1001178JGI26116J46587_10011784F004631MKYVKRYEAYLNEARRPGKPYHGSKILVFDLDDTLVISSAKIKVCNKKTGECYSLTPEEFNTYEKGEHEELNFDEFKSLEIMKAGKLIEYYLKIFKEAYKSKLAVGIVTARDDRKMIHKWLREHVGYRIDYELIFAVNDPIHKFKGNISDRKKAAFKELIEMGYNDMQFYDDDDANLKLVKSLEDEYDGINISTIKAIK*
JGI26116J46587_1001890JGI26116J46587_10018905F008782MKKPIFRVFVSYEIKNKLKVTRRVNTGILDTFVLTSNINEIKNDKELIDRICYLNKKNPNKVEITITNVDVENQYGETTDRFEEE*
JGI26116J46587_1002097JGI26116J46587_10020972F057667MGDLIVNHWQAILFALLIAARAIFSLVPSDNPAVKIFGWIDLIITALVGGDKRKNKKK*
JGI26116J46587_1002097JGI26116J46587_10020974F035480MSVTVTGTSELFKNIDKLAKWSVKDSKALQDVGHRVGAVYANYIKANVKDFATDIKGSNKGEEFIVKKGQLRRSGGTWQPNKKSNVIMSGPRTKAIGKRGKTKKNADGWYAHIVEKGDFGPRFGGKHRTQNTGVFSRGMKATTNRSLKLQEILLKKNFAKYTKKL*
JGI26116J46587_1002324JGI26116J46587_10023241F098686INSGECKMRETRWRLSRMQNSMYQIGEYLKNPSHFYKGQTLGHCCTTEDKAFWIKSIPAKVAELLGYDILPAIAALTNDCLSKRDTYATLAIANGMAKALLKDCDQQEARLKAGISPEYDEMKTGFSEVHGLLVEADRIAEDALQVLDYASKKSLIHARYPQLDENSAGNARNT*
JGI26116J46587_1003090JGI26116J46587_10030902F058116MSDKKENKFFSEIKNQIIAGVGLVIAAGFGIFITNMEGWLSPKKEPTPVVVQDSIPAQPQIIINNIVEKKEAPKVIVKEKKEDEITW*
JGI26116J46587_1005841JGI26116J46587_10058412F099286MMFQNLKINSHIVLVLCLFFFNCNQNNSCEFLDDNNQLLKPIVLKKFEDDVQRVFKNAEIEVAINAFLINEELDSISKNHYTANLISNYSNKSMSQYSSAFLEIYCDSIARIRSKPVSRFEFEELYNQSVD*
JGI26116J46587_1006779JGI26116J46587_10067791F093867QTITSCGENSLPITNQKNVRLDSFESMRYNAFEEVKKDSLEIAKVI*
JGI26116J46587_1007311JGI26116J46587_10073112F063740MKKLAFTFVLLLSFACSKDDNSTPNNLVDPIIGSWQSSFALTDENEAGQVVDISANGIIIFNADGSGSRNLLVTTDGGEPQESNETFEWENLSSALNSSETTQNYAINGEAFTAVFTSNFSSLVLSEDGGDLQISMTRN*
JGI26116J46587_1007900JGI26116J46587_10079002F067697ERLKIQEFRDCIIKHEAERAPLLEQQHKTVSRGAEDPHNVKPYDPEQARLEWRMKNNPFLIPGLNAPNDK*
JGI26116J46587_1007960JGI26116J46587_10079602F013089MGQSKIKTIQPNGTYDSQNGIMYKFEIQLESGDSGEVSAKSEDRWSVGDEVEFEVTPSKWGDKMKLMKPGFTPNQSRGSNPDIQKRIDASWAIGHAINQESDPEKVLEAAEFLLSIRNTLISKL*
JGI26116J46587_1010528JGI26116J46587_10105282F011489MNSGSRKGWNSFLTKHYSKLVRIARRWTDSPSDLVHHTYLRCLDKRFPDGDSENPLGYFVKAMYTEATRGKFKDLYHVTDADPKEQAFESDWTKAIQREQMQLILDRLSWFDRTIFSLYLQGWNMADVSRRSRIGESTLYRSLHITRKILKDVLRNGTKED*
JGI26116J46587_1011160JGI26116J46587_10111602F063740MKKLAFTFVLLLSIACSKDSNSNSNNQVDLIIGSWQSSFTLTDENEDGQVVDIFANGIIIFNADGSGSRNLLVTTDGGEPQESNETFEWENLSSALNFSETTQNYAINGDAFTAVFTSNFSSLVLSEDGGDLQISMTRN*
JGI26116J46587_1011528JGI26116J46587_10115282F054413MANLKKKYNRTKSELVRALNKSDRRTVVLSIKVVETSKIKEHLIYECLYLDNGKEKNVTIIAQDITNAMLKLEPYLGAGIPDTTTNLILGSERYPNVPLDPPV*
JGI26116J46587_1011835JGI26116J46587_10118352F077326MKTLVKPTLVLLFFVALCALPSQVTAQLSANTATSFSITIEIDGNNTTLACNGGCDWKKITVQDNSTIVGENGVANNKKAADGSAFLFEVQKTNSGITLQQIQGTQWAAPIDITCSSKCTLVVNQFGLAQ*
JGI26116J46587_1012041JGI26116J46587_10120411F084730LYSNCTVAILDSVEPVFTVGYFSYLNCITSGVYFHDPSNCIYGYGTPKRALIFF*
JGI26116J46587_1012124JGI26116J46587_10121242F038191MTEKQLIELDFTRNDETAENSGAPNDFHYYTYDVGNFSLISPASDEVEEDGWYVEAFETPEIRFTNPTEVNILLTLLTNNYTEK*
JGI26116J46587_1013122JGI26116J46587_10131222F071304MKKLKSRLLTYLFTDWVKTEEDVETLIMTRNMIEQRKNKIVGHTPVMGFRSHLNNDL*
JGI26116J46587_1014701JGI26116J46587_10147011F095418LAEMKKDFDAFTNYLIILENMASTDQHAFVGDVEVDNARYTKISVYTNQPLGSSSRVLLTETGLYTYKAYGQNSSTNLNASDVSVVGLLEQGTLNVAGATGYEIPDINIPDNYIYYQ*
JGI26116J46587_1015546JGI26116J46587_10155462F047320MSEEDFIYRHIESILDVPGDLSSGINGCILASAYDRTCRILKEHGATKPLIVDTIDDPECELTYLVENGQ*
JGI26116J46587_1016640JGI26116J46587_10166401F022880MFFVTAQKRTDRLNICKGCEHFVDKTKSCGDLVTEAFTDSELCGCHMPTKTRLKVASCPLSKWEAEIKQADLEAIKTFLKTENQFRTNGQLAKLYSKVTGTNTQASQCSSCNRRMLAELQKLINETE*
JGI26116J46587_1016698JGI26116J46587_10166982F038148VIRYLKNLILNKIIKDPLTTEKKEKKKYVISEKNPWLNPKDNFGKFERGKS*
JGI26116J46587_1016935JGI26116J46587_10169351F097398VSTYKYISNVAYYNTNLLTLRVAISFFLKTQTTNQKVVAPLVVALYAIPAKACGFTAVFSGPKIDCNILGRYVYKSRNI*
JGI26116J46587_1017200JGI26116J46587_10172002F035779MVKLFEDFLNEKNLQVQVRDHVIRYRLTYQYGKGGFITMASNSKELDKQIEIDNPMEIGKAIENSINAELKKLRQLFTVEEDHGYQGAGYAFYIVFDDLLKLLNK*
JGI26116J46587_1018719JGI26116J46587_10187191F046200RETMYIKEETGWCKDTEELSKLRKILSRISMNNYRSVPNWRNAHPESEIIASRTYDFCYRMMQALLGDVEDEQIKLDNKIIKTMAKDLYINKIKKL*
JGI26116J46587_1019135JGI26116J46587_10191351F045111SCGIDSDVEKIKKDLRVTNAEVDSLTNRLETKIISEQDMIRLIKEVPAWKTLRIEEISDKERISINALEEKED*
JGI26116J46587_1022474JGI26116J46587_10224742F001488MARLELTLNFPKNFEIKTFNVKSEKKLSPLAKLILQSVQFKHFYYVRDDIFYLLKSNPIERDFLLQALYSIVISLQNNLSINFFDMWIYEIYINKVSINNKFMNQKFQNLESGEYITIKLAYGNNVSQEKK*
JGI26116J46587_1031079JGI26116J46587_10310791F034067FGSKAINSIPKNDKKIKIHFFKLILSFKNKELINIANGIDNCAPIVIGANKVTALIDKYKNIFTPAPIQRENPIKGNIYFFLGIIILQNGNKHKKTKPILNAPKKIGFIDEFNPNLPSG*
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