NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300002848

3300002848: PDIso5.158Aa3July202012



Overview

Basic Information
IMG/M Taxon OID3300002848 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0047444 | Gp0095979 | Ga0049945
Sample NamePDIso5.158Aa3July202012
Sequencing StatusPermanent Draft
Sequencing CenterMcGill University
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size5709735
Sequencing Scaffolds3
Novel Protein Genes6
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHydrocarbon Resource Environments Microbial Communities From Canada And Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Thermal Springs → Tepid (25-34C) → Sediment → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → volcano → sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationNew Zealand
CoordinatesLat. (o)-38.358926Long. (o)176.368682Alt. (m)N/ADepth (m).1
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002998Metagenome / Metatranscriptome514Y
F003129Metagenome / Metatranscriptome505Y
F004004Metagenome / Metatranscriptome457Y
F007018Metagenome / Metatranscriptome359Y
F029092Metagenome189Y
F058394Metagenome / Metatranscriptome135Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
draft_100008All Organisms → cellular organisms → Bacteria46443Open in IMG/M
draft_102310All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia598671Open in IMG/M
draft_102312All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1762149Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
draft_100008draft_10000825F003129MPESLSIASPPAVAEPALIPRNTARVTISILLTLLDSWAVVALGGALYRVSAHHPFWLTGIVLLFVSLFASLARTWYLALAVRPR*
draft_100008draft_10000827F007018MRLSAGRIRSLATRYALAEAAAFPGLRTEPNGFATNRKPAPVVKHSRLRFAHQF*
draft_102310draft_102310505F004004MTKAKTMRMPGKERPAASRLVIQRPPTTEPHHRNLCRNTKPSAGQPIRQTAEGLDYRFLWSLPRVIGPGSLCKARPRQSDYNANTQANGLNINATHIALRTYTLTR*
draft_102312draft_1023121177F029092VRTFDNNGKLVAETTQTRTLDGRSISTMTQFNTYNGQPVHQNITVRESNGKVTTTNVINGKLLP*
draft_102312draft_1023121367F002998MPQEIRIAASKLVWDESKGAEKQFLFAVLAKAKNLREVTVRKTSIERLVTWTAATLTLPDQIVDDLLKKYLLHDHRAVIISFLELLKIPHAEGMIEESFDLSALSNEQVQTAARSLLESADRAGAVLYLKYLVLQGGSWAAIEQVLPAGE*
draft_102312draft_102312907F058394MALRAKIGPGEAEPEGFGGFKVEGENEEWPDLRRNPKRRG*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.