NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F058394

Metagenome / Metatranscriptome Family F058394

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F058394
Family Type Metagenome / Metatranscriptome
Number of Sequences 135
Average Sequence Length 40 residues
Representative Sequence MALRTKIRPDEAEPEGCGGSTVEGENEVWPDFRRNPKGR
Number of Associated Samples 104
Number of Associated Scaffolds 135

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 33.33 %
% of genes near scaffold ends (potentially truncated) 1.48 %
% of genes from short scaffolds (< 2000 bps) 0.00 %
Associated GOLD sequencing projects 97
AlphaFold2 3D model prediction Yes
3D model pTM-score0.15

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (97.778 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog
(30.370 % of family members)
Environment Ontology (ENVO) Unclassified
(28.148 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(47.407 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 0.00%    Coil/Unstructured: 100.00%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.15
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 135 Family Scaffolds
PF13432TPR_16 2.96
PF00578AhpC-TSA 2.22
PF00005ABC_tran 2.22
PF02518HATPase_c 1.48
PF00550PP-binding 1.48
PF00535Glycos_transf_2 1.48
PF07589PEP-CTERM 1.48
PF02769AIRS_C 1.48
PF02661Fic 1.48
PF01925TauE 0.74
PF00825Ribonuclease_P 0.74
PF00501AMP-binding 0.74
PF01019G_glu_transpept 0.74
PF11138DUF2911 0.74
PF13545HTH_Crp_2 0.74
PF07751Abi_2 0.74
PF13565HTH_32 0.74
PF13429TPR_15 0.74
PF02371Transposase_20 0.74
PF03819MazG 0.74
PF08668HDOD 0.74
PF01678DAP_epimerase 0.74
PF13520AA_permease_2 0.74
PF12161HsdM_N 0.74
PF00171Aldedh 0.74
PF00474SSF 0.74
PF00331Glyco_hydro_10 0.74
PF00561Abhydrolase_1 0.74
PF01062Bestrophin 0.74
PF00756Esterase 0.74
PF13662Toprim_4 0.74
PF00364Biotin_lipoyl 0.74
PF01557FAA_hydrolase 0.74
PF02660G3P_acyltransf 0.74
PF03705CheR_N 0.74
PF01118Semialdhyde_dh 0.74
PF00027cNMP_binding 0.74
PF03544TonB_C 0.74
PF02698DUF218 0.74
PF02586SRAP 0.74
PF00378ECH_1 0.74
PF02620YceD 0.74
PF16916ZT_dimer 0.74
PF13517FG-GAP_3 0.74
PF09312SurA_N 0.74
PF09821AAA_assoc_C 0.74
PF11185DUF2971 0.74
PF08530PepX_C 0.74
PF12867DinB_2 0.74
PF02585PIG-L 0.74
PF00072Response_reg 0.74
PF01804Penicil_amidase 0.74
PF05362Lon_C 0.74
PF00903Glyoxalase 0.74
PF02527GidB 0.74
PF09335SNARE_assoc 0.74
PF01566Nramp 0.74
PF13784Fic_N 0.74
PF16499Melibiase_2 0.74
PF01381HTH_3 0.74
PF03717PBP_dimer 0.74
PF02012BNR 0.74
PF08240ADH_N 0.74
PF13340DUF4096 0.74
PF07690MFS_1 0.74
PF00494SQS_PSY 0.74
PF06463Mob_synth_C 0.74
PF00795CN_hydrolase 0.74
PF00793DAHP_synth_1 0.74
PF13803DUF4184 0.74
PF04461DUF520 0.74
PF00135COesterase 0.74
PF01300Sua5_yciO_yrdC 0.74
PF00248Aldo_ket_red 0.74
PF01695IstB_IS21 0.74
PF04052TolB_N 0.74
PF01894UPF0047 0.74
PF01709Transcrip_reg 0.74
PF00933Glyco_hydro_3 0.74

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 135 Family Scaffolds
COG1352Methylase of chemotaxis methyl-accepting proteinsSignal transduction mechanisms [T] 1.48
COG0014Gamma-glutamyl phosphate reductaseAmino acid transport and metabolism [E] 0.74
COG0217Transcriptional and/or translational regulatory protein YebC/TACO1Translation, ribosomal structure and biogenesis [J] 0.74
COG0253Diaminopimelate epimeraseAmino acid transport and metabolism [E] 0.74
COG0344Phospholipid biosynthesis protein PlsY, probable glycerol-3-phosphate acyltransferaseLipid transport and metabolism [I] 0.74
COG035716S rRNA G527 N7-methylase RsmG (former glucose-inhibited division protein B)Translation, ribosomal structure and biogenesis [J] 0.74
COG0398Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 familyFunction unknown [S] 0.74
COG0405Gamma-glutamyltranspeptidaseAmino acid transport and metabolism [E] 0.74
COG0432Thiamin phosphate synthase YjbQ, UPF0047 familyCoenzyme transport and metabolism [H] 0.74
COG0466ATP-dependent Lon protease, bacterial typePosttranslational modification, protein turnover, chaperones [O] 0.74
COG0586Membrane integrity protein DedA, putative transporter, DedA/Tvp38 familyCell wall/membrane/envelope biogenesis [M] 0.74
COG0594RNase P protein componentTranslation, ribosomal structure and biogenesis [J] 0.74
COG0730Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 familyInorganic ion transport and metabolism [P] 0.74
COG0760Peptidyl-prolyl isomerase, parvulin familyPosttranslational modification, protein turnover, chaperones [O] 0.74
COG0768Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2)Cell cycle control, cell division, chromosome partitioning [D] 0.74
COG0810Periplasmic protein TonB, links inner and outer membranesCell wall/membrane/envelope biogenesis [M] 0.74
COG0823Periplasmic component TolB of the Tol biopolymer transport systemIntracellular trafficking, secretion, and vesicular transport [U] 0.74
COG1012Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenaseLipid transport and metabolism [I] 0.74
COG1067Predicted ATP-dependent proteasePosttranslational modification, protein turnover, chaperones [O] 0.74
COG1238Uncharacterized membrane protein YqaA, VTT domainFunction unknown [S] 0.74
COG139923S rRNA accumulation protein YceD (essential in plants, uncharacterized in bacteria)Translation, ribosomal structure and biogenesis [J] 0.74
COG1434Lipid carrier protein ElyC involved in cell wall biogenesis, DUF218 familyCell wall/membrane/envelope biogenesis [M] 0.74
COG1472Periplasmic beta-glucosidase and related glycosidasesCarbohydrate transport and metabolism [G] 0.74
COG1484DNA replication protein DnaCReplication, recombination and repair [L] 0.74
COG1562Phytoene/squalene synthetaseLipid transport and metabolism [I] 0.74
COG1666Cyclic di-GMP-binding protein YajQ, UPF0234 familySignal transduction mechanisms [T] 0.74
COG1750Predicted archaeal serine protease, S18 familyGeneral function prediction only [R] 0.74
COG1914Mn2+ or Fe2+ transporter, NRAMP familyInorganic ion transport and metabolism [P] 0.74
COG2120N-acetylglucosaminyl deacetylase, LmbE familyCarbohydrate transport and metabolism [G] 0.74
COG2135ssDNA abasic site-binding protein YedK/HMCES, SRAP familyReplication, recombination and repair [L] 0.74
COG2272Carboxylesterase type BLipid transport and metabolism [I] 0.74
COG2366Acyl-homoserine lactone (AHL) acylase PvdQSecondary metabolites biosynthesis, transport and catabolism [Q] 0.74
COG2896GTP 3',8-cyclase (molybdenum cofactor biosynthesis protein MoaA)Coenzyme transport and metabolism [H] 0.74
COG2936Predicted acyl esteraseGeneral function prediction only [R] 0.74
COG2949Uncharacterized periplasmic protein SanA, affects membrane permeability for vancomycinCell wall/membrane/envelope biogenesis [M] 0.74
COG3480Predicted secreted protein YlbL, contains PDZ domainSignal transduction mechanisms [T] 0.74
COG3547TransposaseMobilome: prophages, transposons [X] 0.74
COG3693Endo-1,4-beta-xylanase, GH35 familyCarbohydrate transport and metabolism [G] 0.74
COG4230Delta 1-pyrroline-5-carboxylate dehydrogenaseAmino acid transport and metabolism [E] 0.74
COG4823Abortive infection bacteriophage resistance proteinDefense mechanisms [V] 0.74

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A97.78 %
All OrganismsrootAll Organisms2.22 %

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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002848|draft_102312All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1762149Open in IMG/M
3300014492|Ga0182013_10009752All Organisms → cellular organisms → Bacteria10076Open in IMG/M
3300033402|Ga0326728_10004460All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae41386Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog30.37%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil10.37%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil6.67%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog5.93%
BogEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Bog5.19%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland4.44%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil4.44%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen3.70%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil2.22%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil2.22%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa2.22%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland2.96%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.96%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil1.48%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.48%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.48%
SoilEnvironmental → Terrestrial → Soil → Clay → Unclassified → Soil1.48%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere1.48%
WetlandEnvironmental → Aquatic → Marine → Wetlands → Sediment → Wetland0.74%
Hydrocarbon Resource EnvironmentsEnvironmental → Aquatic → Thermal Springs → Tepid (25-34C) → Sediment → Hydrocarbon Resource Environments0.74%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.74%
Permafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil0.74%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost0.74%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil0.74%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil0.74%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.74%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.74%
Sugarcane Root And Bulk SoilHost-Associated → Plants → Rhizome → Unclassified → Unclassified → Sugarcane Root And Bulk Soil0.74%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere0.74%
Host-AssociatedHost-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated0.74%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000567Peat soil microbial communities from Weissenstadt, Germany - SII-2010EnvironmentalOpen in IMG/M
3300001213Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)EnvironmentalOpen in IMG/M
3300002848PDIso5.158Aa3July202012EnvironmentalOpen in IMG/M
3300003316Sugarcane root Sample L1Host-AssociatedOpen in IMG/M
3300004092Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300004635Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3EnvironmentalOpen in IMG/M
3300005458Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaGEnvironmentalOpen in IMG/M
3300005650Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate RNA 2013_055 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300009548Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_100EnvironmentalOpen in IMG/M
3300009632Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40EnvironmentalOpen in IMG/M
3300009665Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10EnvironmentalOpen in IMG/M
3300009697Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum magellanicum MGHost-AssociatedOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300010396Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2EnvironmentalOpen in IMG/M
3300011089Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 58 (Metagenome Metatranscriptome) (version 2)EnvironmentalOpen in IMG/M
3300012199Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012209Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012469Combined assembly of Soil carbon rhizosphereHost-AssociatedOpen in IMG/M
3300014153Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_60_metaGEnvironmentalOpen in IMG/M
3300014160Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_30_metaGEnvironmentalOpen in IMG/M
3300014199Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaGEnvironmentalOpen in IMG/M
3300014491Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaGEnvironmentalOpen in IMG/M
3300014492Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaGEnvironmentalOpen in IMG/M
3300014499Permafrost microbial communities from Stordalen Mire, Sweden - 612S2S metaGEnvironmentalOpen in IMG/M
3300014501Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014655Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_10_metaGEnvironmentalOpen in IMG/M
3300014658Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaGEnvironmentalOpen in IMG/M
3300014838Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300016422Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111EnvironmentalOpen in IMG/M
3300016728Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_10_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300017931Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_100EnvironmentalOpen in IMG/M
3300017948Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10EnvironmentalOpen in IMG/M
3300017988Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaGEnvironmentalOpen in IMG/M
3300018019Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150EnvironmentalOpen in IMG/M
3300018030Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100EnvironmentalOpen in IMG/M
3300021402Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-OEnvironmentalOpen in IMG/M
3300021406Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-OEnvironmentalOpen in IMG/M
3300021474Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-OEnvironmentalOpen in IMG/M
3300022524Peat soil microbial communities from Stordalen Mire, Sweden - 717 E1 20-24EnvironmentalOpen in IMG/M
3300022875Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 10-14EnvironmentalOpen in IMG/M
3300023068Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 20-24EnvironmentalOpen in IMG/M
3300023090Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24EnvironmentalOpen in IMG/M
3300023101Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 10-14EnvironmentalOpen in IMG/M
3300023255Peat soil microbial communities from Stordalen Mire, Sweden - 717 P2 10-14EnvironmentalOpen in IMG/M
3300025612Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10 (SPAdes)EnvironmentalOpen in IMG/M
3300026502Peat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T-25.r1EnvironmentalOpen in IMG/M
3300027080Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF009 (SPAdes)EnvironmentalOpen in IMG/M
3300027905Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)EnvironmentalOpen in IMG/M
3300028068Peat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T75EnvironmentalOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300028552Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N1_1EnvironmentalOpen in IMG/M
3300028562Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N1_3EnvironmentalOpen in IMG/M
3300028565Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E2_3EnvironmentalOpen in IMG/M
3300028572Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_1EnvironmentalOpen in IMG/M
3300028745Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E1_3EnvironmentalOpen in IMG/M
3300028785Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_2EnvironmentalOpen in IMG/M
3300028788Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E2_2EnvironmentalOpen in IMG/M
3300028813Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_3EnvironmentalOpen in IMG/M
3300028859Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E1_1EnvironmentalOpen in IMG/M
3300028866Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_2EnvironmentalOpen in IMG/M
3300028882Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_3EnvironmentalOpen in IMG/M
3300029883I_Bog_E2 coassemblyEnvironmentalOpen in IMG/M
3300029907I_Bog_N1 coassemblyEnvironmentalOpen in IMG/M
3300029911III_Bog_N2 coassemblyEnvironmentalOpen in IMG/M
3300029913III_Bog_N3 coassemblyEnvironmentalOpen in IMG/M
3300029915III_Bog_E1 coassemblyEnvironmentalOpen in IMG/M
3300029916Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E3_1EnvironmentalOpen in IMG/M
3300029922III_Fen_E1 coassemblyEnvironmentalOpen in IMG/M
3300029945I_Bog_N2 coassemblyEnvironmentalOpen in IMG/M
3300029952II_Bog_N3 coassemblyEnvironmentalOpen in IMG/M
3300029955II_Bog_E2 coassemblyEnvironmentalOpen in IMG/M
3300029956Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N1_2EnvironmentalOpen in IMG/M
3300029985Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E1_1EnvironmentalOpen in IMG/M
3300029988Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E2_3EnvironmentalOpen in IMG/M
3300029992Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N2_3EnvironmentalOpen in IMG/M
3300029994Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E1_4EnvironmentalOpen in IMG/M
3300030011Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E2_3EnvironmentalOpen in IMG/M
3300030014Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N3_3EnvironmentalOpen in IMG/M
3300030020II_Bog_N1 coassemblyEnvironmentalOpen in IMG/M
3300030114I_Fen_E2 coassemblyEnvironmentalOpen in IMG/M
3300030503III_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300030506Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N1_1EnvironmentalOpen in IMG/M
3300030519Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E3_3EnvironmentalOpen in IMG/M
3300030878Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031249Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaGHost-AssociatedOpen in IMG/M
3300031259Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E1_3EnvironmentalOpen in IMG/M
3300031524Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3EnvironmentalOpen in IMG/M
3300031525Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3EnvironmentalOpen in IMG/M
3300031671Soil microbial communities from Risofladan, Vaasa, Finland - OX-1EnvironmentalOpen in IMG/M
3300031672Soil microbial communities from Risofladan, Vaasa, Finland - OX-2EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031712Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaGHost-AssociatedOpen in IMG/M
3300032770Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5EnvironmentalOpen in IMG/M
3300032783Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3EnvironmentalOpen in IMG/M
3300032805Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2EnvironmentalOpen in IMG/M
3300032895Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3EnvironmentalOpen in IMG/M
3300032896Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4EnvironmentalOpen in IMG/M
3300032898Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1EnvironmentalOpen in IMG/M
3300033134Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2EnvironmentalOpen in IMG/M
3300033402Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MNEnvironmentalOpen in IMG/M
3300033405Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MYEnvironmentalOpen in IMG/M
3300033982Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB22AY SIP fractionEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12270J11330_1011037723300000567Peatlands SoilLREKIGPDEAEPEGFGNPKVEGDNKVWPDFIRNPKGRGGFSRSLRPS
JGIcombinedJ13530_10120295513300001213WetlandLRAKIGPDEAEPEDFGYSKVEGENEVWTDLRRNPEGRGRFSR*
draft_1023129073300002848Hydrocarbon Resource EnvironmentsMALRAKIGPGEAEPEGFGGFKVEGENEEWPDLRRNPKRRG*
rootH1_1005679143300003316Sugarcane Root And Bulk SoilLRAEIRPDEAEAEGCGGPTVEADNEGWTDFRCNPQGRGRFS*
Ga0062389_10070947723300004092Bog Forest SoilMALRAKIRPAKAEAENRGDPTIKAENAVWPDLRRNPKGRGRFS*
Ga0062388_10057437013300004635Bog Forest SoilMVLRAEIRPDKAEAENRGDPTIEGENAIWPDLRRDPKGQGRLS*
Ga0070681_1099658413300005458Corn RhizosphereLRAKIWTDEAESAGCGGPTVKDDNEVWPDFGRNPKGKGEFS
Ga0075038_1134247413300005650Permafrost SoilVALRTKIGPDEAESEGCGGSTVEDDNEVWPDLRRNPEGWGQF
Ga0070766_1041696913300005921SoilVKIAPDEAESEGCGGPTTEDDNEVWRDFHRNPKGWGQFSSFR
Ga0070716_10053859823300006173Corn, Switchgrass And Miscanthus RhizosphereMALRVKIRPDEAEPNGFGGSKVEGENNVWSDFLRNPKGRGPIFP
Ga0116107_115895323300009548PeatlandMALREKIRLDEDLSLGWEAEPEGCGGSTVESENEVWPDF
Ga0116102_120659513300009632PeatlandMALPAKIAPDEAEPEGCGNPTAEGENEVWRDLRRSPKGRGRFSPFR
Ga0116135_108818113300009665PeatlandMALRGKIGPNEAEPEGFGGSKVEGENEVWPDFRRNPSGRGQFSRFPRPSS
Ga0116231_1037466023300009697Host-AssociatedMALRAKIRPDKAEPEDCGYSTIEGENAVWPNLRRNPKGQGQFS*
Ga0134128_1042813813300010373Terrestrial SoilMALRGKIRSDEAEPEGCDGSTVEGENEVWPDFRRNPKGR
Ga0134126_1103923113300010396Terrestrial SoilLLAKIRVDEAESAGCGGTTVKDDNEVWTDFGRNPK
Ga0138573_125646423300011089Peatlands SoilLREKIGPDEAEPEGFGDPKVEGDNKVWPDFIRNPKGRGGFS
Ga0137383_1041105613300012199Vadose Zone SoilLRVKIGPDEAEPEGCGRPTVKGENEVWPDFRRNPP
Ga0137379_1171606213300012209Vadose Zone SoilLRTEIGSDEAESEGCGGSTVEDDNEVWTNLRRNPK
Ga0150984_12019745013300012469Avena Fatua RhizosphereALRAQIGPDEAEAEGCGGSTVEDDNEVWANLRRNPKGRGRFSRSLRHSSFQ*
Ga0181527_104202713300014153BogMALREKVRPDEAEPEGCGGSTVEGENEVWPDFHRNPKGR
Ga0181517_1040985113300014160BogMTLRGKIRPNEAEQEGCGGSTAEDENEVWPNLLRNPSGRGQF
Ga0181535_1001219313300014199BogGPDEAEPEGCGGSTVKGENEVWPDFLRNPTGRSQFS*
Ga0182014_1001991813300014491BogVALRGKIWPDEAEPEGCGGPTVEGENEVWPDFHRNPKGRGQFSSFRRH
Ga0182013_1000975213300014492BogMALRAKKRPDEAEPEDCGGSTVEGGNEVWPLFRRNPKG
Ga0182013_1005574513300014492BogLRTKIGPDEAESEGCGGSTVEDDNEVWPDLRRNPKGW
Ga0182012_1041857313300014499BogMGQAALRAKIRQDEAEPEGCGGSTVKGENEVWPDFP
Ga0182012_1059513613300014499BogMALRTKIRPDEAEPEGCGGSTVEGENEVWPDFRRNPKGRGQFSRF
Ga0182024_100000701973300014501PermafrostMALRTKIRPDEAEAEGCGGSTVEDENEVWPDFRRNPKG
Ga0181516_1067226123300014655BogMAVRAKIGPDEAEPAGRHGPTVKGDNEVWPDLRRNPE
Ga0181519_1085707113300014658BogMGSDEAESEGCGGSTVEDDNNVWPDFRRNPKDWGQFSRF
Ga0182030_1000404813300014838BogLRGKIGPDEAEPEGFGGSKVEGDNEVWPDFTRNPK
Ga0182030_1094739923300014838BogLWGGDEAEPEGCGGFTVKGENEVWPDFRRNPKGRGHFS
Ga0182039_1077430323300016422SoilMALRAKIGPDEAEPEGCGGPTVEGENEVWPDLRRNPKGRG
Ga0181500_118518213300016728PeatlandLRAKIRPDEAEPEGCGGPTVKGENEVWPNLRRNPSGRGQFS
Ga0187877_132320513300017931PeatlandLRAKIRSDEAESEGRGGSTVEDENEVWPDFRRNPSG
Ga0187847_1021716213300017948PeatlandLACAALRAKTAPDEAEDDGCGQPTAKDDNEVWRALRRNPKGW
Ga0187847_1072578423300017948PeatlandLPAKIGPDEAEPEDCGGPTVKGENEVWPDLRRNPKGRGHPSSVNRP
Ga0181520_1010824813300017988BogVQGIGPDEAEDDGCGGSTAQDDNEVWPDFGRNPEGQGR
Ga0181520_1088017423300017988BogVALRWKIRPVEAESEGCGGPTVEDDNEEWADFPRNPKGWGQFSRF
Ga0181520_1088965123300017988BogVALLGKIRPVEAESEGCGGPTVEDDNEEWADFPRNPKGWGQFSRF
Ga0187874_1025485013300018019PeatlandMALRVKIGSYEAGPEGCGGSTVEGENEVWPDFHPSDEDQ
Ga0187869_1046986523300018030PeatlandMALRGKIGPNEAEPEGFGGSKVEGENEVWTDLRRNL
Ga0210385_1118328413300021402SoilLREEIAPDEAKSEGCGGPTIEDDNEVWRDFHRNPKGWGQF
Ga0210386_1057289513300021406SoilMALRAKIRPDEAESKGCGGSTVEDENEVWPDFRRNPSGRGQFS
Ga0210390_1015723813300021474SoilMALRAKIGPYEAEFEGCGGPTVEDDNEVWPDFRRNPE
Ga0210390_1021230333300021474SoilVALREKIAPDEAEDEGCGRSTIEDDNEVWRDFHRNPKGWGQFSSFPRR
Ga0224534_105127413300022524SoilLREKIGPDEAEPEGRGGSTVEGENEVWPDFPRNPPGRG
Ga0224553_103741413300022875SoilMALRTKIRPDEAEPEGCGGSTVEGENEVWPDFRRNPKGRGQ
Ga0224554_100575313300023068SoilMALRAKKRPDEAEPEDCGGSTVEGENEVWPLFRRNPK
Ga0224554_107398913300023068SoilMALRAKKRPDEAEPEDCGGSTVEGENEVWPVFRRNPK
Ga0224558_121759423300023090SoilVAALREKIGPDEAESEGCGGSTVEGDNEISPYFIRNPKGRGQFPSF
Ga0224557_107040833300023101SoilMALRAKKRPDEAEPEDCGGSTVEGENEVWPLFRRNPKGR
Ga0224547_100409113300023255SoilMALRTKIRPDEAEAEGCGGSTVEDENEVWPDFRRNPKGR
Ga0208691_114173213300025612PeatlandMALRTKILPDEAEPEGCGGTTVEGENEVWQDFRRNPK
Ga0255350_1000101243300026502SoilMALRVKIGPEQADPKGFGGSKAEDENDVWPDFRCNPSGRGQFS
Ga0208237_103798423300027080Forest SoilLREKIRPYEAEAEECGGPTFKADNEVWPDFRRNPE
Ga0209415_10036088103300027905Peatlands SoilLREKIGPDEAEPEGFGDPKVEGDNKVWPDFIRNPKG
Ga0255355_103536123300028068SoilLRTKITPDEAESEGCGGSTVEDDNDEWHDLRRNPE
Ga0137415_1084787813300028536Vadose Zone SoilVSSNSWLAALRAKISPDKAEVEGCGGSTVEADNEVWANFRRNPERRGGFF
Ga0302149_104927323300028552BogMALRAKKRPDEAEPEDCGGSTVEGENEVWPLFRRNPKGRGQFSRFL
Ga0302149_114367013300028552BogLAWMALRAKKRPDEAEPEDCGGSTVEGENEVWPLFRRNPKGRRHRASSGNRP
Ga0302151_1020406913300028562BogMALRAKKRPDEAEPEDCGGSTVEGENEVWPLFRRNPKG
Ga0302145_1019882913300028565BogLRAKIRPDEAEPAGCGGSTVKGENEVWTDFGRNPGSPAHVLC
Ga0302152_1007023323300028572BogMALRAKKRPDEAEPEDCGGSTVEGENEVWPLFRRNP
Ga0302267_1006804623300028745BogMALREKIRPDEAESEGCGGPTVEGDNEVWPDYIRNP
Ga0302267_1017440213300028745BogVALRWKIRPVEAESEGCGGPTVEYDNEEWADFPRNPKGWGQFSR
Ga0302201_1022299113300028785BogMALRAKKRPDEAEPEDCGGSTVEGENEVWPLFSRN
Ga0302201_1036610923300028785BogLRTKIAPDEAESEGCGGSTVKDDNEEWRDFRRNPEGWGQF
Ga0302201_1040168313300028785BogMALREKIRPDEAESEGCGGPTVEGDNEVWPDYIRNPKGRG
Ga0302189_1010222813300028788BogMALRAKKRPDEAEPEDCGGSTVEGENEVWPLFSRNPKGRGQFSRFL
Ga0302157_1068606113300028813BogLRGKIGPDEAEPEGFGDSKVKGDNEVWPDFHRNPNG
Ga0302265_109842913300028859BogMALRAKKRPDEAEPEDCGGSTVEGENEVWPLFSRNP
Ga0302278_1001802893300028866BogLRTKIAPDEAESEGCGGSTVKDDNEEWRDFRRNPE
Ga0302154_1009864713300028882BogMALRAKKRPDEAEPEDCGGSTVEGENEVWPLFSRNPK
Ga0311327_1006040813300029883BogMALRAKKRPDEAEPEDCGGSTVEGENEVWLLFRRNPKG
Ga0311327_1023876423300029883BogLLGKIRPVEAESEGCGGPTVEDDNEEWADFPRNPK
Ga0311327_1032513013300029883BogGLHLWGGDEAEPEGCGGFTVKGENEVWPDFRRNPKGRGHFSPFRRHSSLLEL
Ga0311329_1038153213300029907BogMALRAKKRPDEAEPEDCGGSTVEGGNEVWPLFSRNP
Ga0311361_1045937823300029911BogVALRWKIRPVEAESEGCGGPTVEDDNEEWADFPRNPKGWGQFSRFPR
Ga0311362_1015685013300029913BogMALRAKKRPDEAEPEDCGGSTVEGENEVWPVFRRNPKG
Ga0311362_1016378933300029913BogMALRAKKRPDEAEPEDCGGSTVEGENEVWLLFRRNPK
Ga0311362_1047856413300029913BogLLGKIRPVEAESEGCGGPTVEDDNEEWADFPRNPKG
Ga0311362_1057240413300029913BogMALRAKKRPDEAEPEDCGGSTVEGENEVWPLFIRNP
Ga0311358_1016961613300029915BogMALRTKIRPDEAEPEGCGGSTVEGENEVWPDFRRNPKGR
Ga0311358_1029723423300029915BogVALLVKIGPDEAESEGCGGPTVEDDNDVWPDFHRSPKG
Ga0302148_100527063300029916BogMALRAKKRPDEAEPEDCGGSTVEGENEVWLLFRRNPKGRG
Ga0302148_103032213300029916BogMALRAKKRPDEAEPEDCGGSTVEGENEVWPLFRRN
Ga0311363_1076598613300029922FenLRAKIRQDEAEPEGCGGSTVKGENEVWPDFRRNPSG
Ga0311330_1023327723300029945BogMALRAKKRPDEAEPEDCGGSTVEGENEVWPLFRRNPKGRGQFS
Ga0311346_1039566733300029952BogNATGRMALRVKIGPEQADPKGFGGSKAEDENDVWPDFRCNPSGRGQFS
Ga0311342_1042371123300029955BogMALRTKIRPDEAEPEGCGGSTVEGENEVWPDFRRNPK
Ga0311342_1064820913300029955BogMALRAKKRPDEAEPEDCGGSTVEGENEVWPLFRRNPKGRGQF
Ga0302150_1010222913300029956BogLRGKIGPDETEPEGFGDSKVEGDNEVWPDFTRNPRSPVRE
Ga0302280_119431023300029985FenMALRAKKRPDEAEPEDCGGSTVEGENEVWPLFRRNPKGRR
Ga0302190_1008766413300029988BogLRAKIRPDEAEPEGCGGSTVEGENEVWPDFRRNPKG
Ga0302276_1010887113300029992BogLFKLLGWMALREKIRPDEAESEGCGGPTVEGDNEVWPDYIRNPKGRG
Ga0302283_130469313300029994FenLRWKIRPVEAESEGCGGPTVEDDNEEWADFPRNPK
Ga0302270_1029020013300030011BogVALRWKIRPVEAESEGCGGPTVEYDNEEWADFPRNPKGWGQFSRFPRRSS
Ga0302175_1013190413300030014FenLRAKIGSDNAGPEGSGGPTVEGEIHGWPLLRRNPKGR
Ga0311344_1131158513300030020BogLRAKIGPDEAESEGCGGPTVEGENEVWPDLRRNPADRGQFS
Ga0311333_1180631523300030114FenLRTKTGPDEAGSEGCGGPTVEDDNEVWPGLRRNPEG
Ga0311370_1203675723300030503PalsaMALRAKIRPDEAEREGCGGLTVEGENEVWQDFLRNPKGRGQFSSF
Ga0302194_1000463013300030506BogMALRAKKRPDEAEPEDCGGSTVEGENEVWPLFRRNPKGRG
Ga0302193_1020441423300030519BogVALLGKIRPVEAESEGCGGPTVEDDNEEWADFPRNPKGWGQFSRFP
Ga0265770_101852623300030878SoilMALRAKIGPDEAEPEGCGDPTVEGENEVWPDFRRNPKGRGRFPRFRCRSPL
Ga0265339_1055678223300031249RhizosphereMVWAALRTKIRPDEAEPAGCGGSTVKGENEVWPDLRRSLSGRGQFS
Ga0302187_1048287613300031259BogLRAKILPDQAEPAGCGGSTVKGENEVWQDFRRNPK
Ga0302320_1108722823300031524BogVALRWKIRPVEAESEGCGGPTVEYDNEEWADFPRNPKGWGQFSRFPRRS
Ga0302326_1012133013300031525PalsaMALRAKIRPDKAEPDDCGDPTIEGENEVWPDLRRNPKGRGQF
Ga0302326_1063808413300031525PalsaMALRVKIRPDKAEPDHCGDPTIEGENEVWPDLRRNPKGRGQ
Ga0307372_1000516513300031671SoilMALRAKMRAGEAKSEGCGGPTAEDDNEVWPHFRRNP
Ga0307373_1002269873300031672SoilMRAGEAKSEGCGGPTAEDDNEVWPHFRRNPEGRGRFSPFF
Ga0310686_11319468093300031708SoilMRKPTMALRTKIRPDEAEPEGCGGSTVEGENEVWPDFRRN
Ga0265342_1045183413300031712RhizosphereLRAKIAPDEAEDDGCGDPTTKDDNEAWRYFRRDPLGWGQFSPFLC
Ga0335085_1081828823300032770SoilLLTLLEWMALRAKIGPDEAEREVCGGPTVKGENEVWPDLRRNPEGR
Ga0335085_1210376823300032770SoilMALRSENRADEAERDVCGGPTVKGENEVWPDLRSNPEGRG
Ga0335079_1193467613300032783SoilLRAKIGLDEAEAAGCGRPPVKADNEVWPDFHRNPKERGGFSR
Ga0335078_1139052123300032805SoilMALRGKIRPEEAESEGCGGSTVEGENEIWPDLPRNP
Ga0335078_1186424623300032805SoilMALRGKIGPEEAEPEGCGGSTVEGENEVWPDLPRNPKGRG
Ga0335074_1019749043300032895SoilMALRAKIRPDEAEPEGFGGSKVEGENEVWPEFRRNPKGRGQF
Ga0335074_1050895613300032895SoilLREKIAPDEAEDEGCGGSTVEDDNEVWGDFRRNPSGWGRFSSFRCR
Ga0335075_1078658923300032896SoilMALRAKIRPDEAEPEGFGGSKVEGENEVWPHFRRN
Ga0335072_1004251113300032898SoilMALLAKIAPDAAEPEGFGDSKVEGDNKVCRNFRSNPKGR
Ga0335072_1032344243300032898SoilLREKIAPDEAEDEGCGGSTVEDDNEVWDDFRRNPSGWGR
Ga0335072_1120477813300032898SoilMALRAKIGSDEAEPEGFGGSKVEGENEVWRDFRRN
Ga0335073_1054203813300033134SoilMALRGKIRPEEAEPEGCGGSAVEGENEVWPDLPRNPKGR
Ga0335073_1130571613300033134SoilMALLAKIAPDAAEPEGFGDSKVEGDNKVWRNFRSNPKGRGPFFR
Ga0335073_1210807923300033134SoilMALRGEIRPEEAEPEGCGGSTVEGENEVWPDLPRNPKGR
Ga0326728_1000446013300033402Peat SoilLTFARAALRVKIGPGETESEGCGGSTVEDDNEAWPDLRRNP
Ga0326728_1013372733300033402Peat SoilLLTFARAALRVKIGPGETESEGCGGSTVEDDNEAWPDLRRNPKG
Ga0326727_1036853013300033405Peat SoilMALRVKIRSDEAEPEGCGGFTVKGENEVWPDFRRNPEGRGQFSRFL
Ga0326727_1066913223300033405Peat SoilAKIMSDEAEPEGFGGLKVEGENEVWRDFRHNPKGRGRFSPFRCRSSLQ
Ga0371487_0152627_1035_11483300033982Peat SoilMALRVKIRPDEAEPEGCGGSTVEGENEVWPDFHRNPKG
Ga0371487_0244022_2_1243300033982Peat SoilMKIGPGETESEGCGGSTVEDDNEAWPDLRRNPQGRGQFSPF

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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