NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300002844

3300002844: Stormwater retention pond microbial communities from Williamsburg, VA - Sample from Jamestown High School



Overview

Basic Information
IMG/M Taxon OID3300002844 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0111381 | Gp0095384 | Ga0049950
Sample NameStormwater retention pond microbial communities from Williamsburg, VA - Sample from Jamestown High School
Sequencing StatusPermanent Draft
Sequencing Center
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size914248
Sequencing Scaffolds36
Novel Protein Genes61
Associated Families50

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage11
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes8
Not Available7
All Organisms → Viruses → Predicted Viral5
All Organisms → cellular organisms → Bacteria → Proteobacteria2
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM011

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameStormwater Retention Pond Microbial Communities From Williamsburg, Va
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Pond → Unclassified → Stormwater Retention Pond → Stormwater Retention Pond Microbial Communities From Williamsburg, Va

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biomepondstormwater
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Williamsburg, Virginia
CoordinatesLat. (o)37.251274Long. (o)-76.791915Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000340Metagenome / Metatranscriptome1267Y
F000706Metagenome / Metatranscriptome926Y
F000763Metagenome / Metatranscriptome901Y
F000961Metagenome / Metatranscriptome820Y
F001774Metagenome / Metatranscriptome636Y
F001991Metagenome / Metatranscriptome607Y
F002085Metagenome / Metatranscriptome595Y
F002764Metagenome531Y
F003331Metagenome / Metatranscriptome493Y
F008128Metagenome / Metatranscriptome338Y
F008183Metagenome / Metatranscriptome337Y
F008751Metagenome / Metatranscriptome328Y
F009140Metagenome / Metatranscriptome322Y
F011742Metagenome287N
F012211Metagenome / Metatranscriptome282N
F012869Metagenome / Metatranscriptome276Y
F015336Metagenome / Metatranscriptome255Y
F020138Metagenome225Y
F023572Metagenome209Y
F024744Metagenome204Y
F034109Metagenome175N
F034115Metagenome / Metatranscriptome175Y
F034150Metagenome / Metatranscriptome175Y
F034503Metagenome174Y
F035226Metagenome172Y
F035757Metagenome / Metatranscriptome171Y
F036031Metagenome171Y
F036206Metagenome / Metatranscriptome170Y
F040534Metagenome / Metatranscriptome161N
F041082Metagenome160N
F043291Metagenome156N
F047577Metagenome / Metatranscriptome149Y
F049562Metagenome146Y
F053292Metagenome141Y
F054870Metagenome / Metatranscriptome139N
F058557Metagenome / Metatranscriptome135Y
F062385Metagenome / Metatranscriptome130Y
F062760Metagenome130N
F066774Metagenome / Metatranscriptome126Y
F067666Metagenome / Metatranscriptome125N
F071155Metagenome / Metatranscriptome122Y
F073250Metagenome120Y
F074571Metagenome119Y
F077217Metagenome / Metatranscriptome117N
F083714Metagenome112Y
F083939Metagenome / Metatranscriptome112N
F086839Metagenome / Metatranscriptome110N
F095158Metagenome105Y
F097199Metagenome104N
F104778Metagenome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
contig_10002All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage32235Open in IMG/M
contig_10006All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage14645Open in IMG/M
contig_10011All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes7173Open in IMG/M
contig_10012All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage7112Open in IMG/M
contig_10025Not Available4598Open in IMG/M
contig_10026All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage4536Open in IMG/M
contig_10028All Organisms → Viruses → Predicted Viral4360Open in IMG/M
contig_10032All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage4138Open in IMG/M
contig_10033All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage4116Open in IMG/M
contig_10037All Organisms → cellular organisms → Bacteria → Proteobacteria3939Open in IMG/M
contig_10039All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes3779Open in IMG/M
contig_10040All Organisms → Viruses → Predicted Viral3704Open in IMG/M
contig_10042All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes3689Open in IMG/M
contig_10045Not Available3651Open in IMG/M
contig_10050All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes3387Open in IMG/M
contig_10054All Organisms → cellular organisms → Bacteria → Proteobacteria3061Open in IMG/M
contig_10101All Organisms → cellular organisms → Bacteria1913Open in IMG/M
contig_10116Not Available1738Open in IMG/M
contig_10123All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1681Open in IMG/M
contig_10141All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1543Open in IMG/M
contig_10151All Organisms → Viruses → Predicted Viral1443Open in IMG/M
contig_10154All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1408Open in IMG/M
contig_10156All Organisms → Viruses → Predicted Viral1397Open in IMG/M
contig_10178All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1289Open in IMG/M
contig_10208All Organisms → Viruses → Predicted Viral1125Open in IMG/M
contig_10220Not Available1090Open in IMG/M
contig_10229Not Available1060Open in IMG/M
contig_10241All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1023Open in IMG/M
contig_10280All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage943Open in IMG/M
contig_10290All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage933Open in IMG/M
contig_10324Not Available872Open in IMG/M
contig_10365Not Available778Open in IMG/M
contig_10394All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales741Open in IMG/M
contig_10401All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01730Open in IMG/M
contig_10459All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage646Open in IMG/M
contig_10505All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes569Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
contig_10002contig_1000227F000961MNSPDIDPVKYGVLWQKVQDYERRFDDMGRKIDRMEDQLDRLVALANQGRGGFWAGMAFVSFISSAVGFSISWFKGH*
contig_10002contig_100029F035226MAITKFTQQKDDAFDDVQHLMCSVPGCPKRWSVHMEGMRPKCSEHQWSDKKPATRRDIATLLPNTKPVKHWMDDEEF*
contig_10006contig_1000610F000340MNWSDVLKAVIPIVVMSLAWLLGQVNSFSERLTKIEGSMPALITKEGIPTDSPISAERRHALKEEIYKDIHQLQVKVQLLEEREKFGKK*
contig_10011contig_100116F002085MSNNITPLQNTNNIRMADFIRVTTQDALGDTVIYRLASTPSALTIPDVDPEPFDALGALVKVGDVQRDIKSTANETSITLVGINTAELGWVLSNKIKGSLIEMWHGFFDDNNELITTGGTGGLYKFFTGYVNSFNITEQWFEEARMYYGAINVTASSIQIILQNRTAGRYTNNNSWQFFTPTDTSMDRVSVIQNVNYFFGRDRDPSVYRS*
contig_10011contig_100117F015336RAADREYEQYLNFGTTGWANYIYYQGDMTSAEISACQYQTSTANKTIVLGSLPTMGATEYIVKTGDFLQIDRYSYIATADVQRGGGSTVNIPVHRTIMTTLASPMYAVIGQYGTTQSIGGSTFTGVTFPVILQQYPNYVLIPMTNDSFIQWNGTFKAIEAVL*
contig_10012contig_100127F041082MPVTHYERKEMATNPHKEIPGSGVMYWEDESMRKSEKSPDFKGFLVLEMDYRAGEKLKIAAWQKPTSRGTNLLSLKEDNYFKKKNLEEGKPTEVRPAYAKRRDDDDVPF*
contig_10025contig_100254F049562LKALQQEVSASYLKGYDEARQRCQWTITSAIDESNRLRLALDEALAHVDASTKIKILAVLRRSAT*
contig_10026contig_100262F001774MALKLEVQTQFGVPAPEAYAKITNFFGNKDQIQVQVAVYYNEEARHANMATVKENAHYINVEDLKGDIIPAIYEVLKTFSDYAGAEDC*
contig_10026contig_100263F047577LFQTAFQVLAFQTNAFQIGQIPPNPYTDTHDGFTPEEIRRARNLDRKIREKELALLKAQRADREARKARIRGLVDPKPKIVAKPQQNKIQSIQEVKADKPSVDTRELEQSIAYLENQREKLYRAVELRKEQAQLRVKLQILEAKRLAELDDEHAIVLLLQ*
contig_10028contig_100283F008183MEVSGEIDPVKYGVLWQKVQDMDKKMDKMETQLEQLVALANKGKGSFWAGMVFASMLSASVGFFIAWFKR*
contig_10032contig_1003211F012211MATDEEKFKYECWAIVQELDPEDVADAIQDSVALVEAIKANNAEDVASIVMKRVELKVRRLAELRVFDVVKTPWVDDIDELHEYRNLRIERVQKSLDERKITAAKMDGPFKEMFDE*
contig_10032contig_100324F097199MSEALNRVIEEQQKRIDDLLEGNKKLFERSARVFKQNEELFEAMAKLLDYDLPSDNITDKQWADYCSLKHEVRMQMIDAGYCVRCYEFICECDEF*
contig_10032contig_100325F034503MTKNEAHQLLDKRKQGLAVPLYLVNRALVVSGDISMACPPCQTARMESTGVAQGEGTRGLPIQFMAGDNSGFNQRNESTQ*
contig_10032contig_100329F009140MRLNLTHKTLLKRLTDGPRSLPQLTHSNTNDNAVSFHYAKYLPELERFGYVIFHDDKWHLTQYGRMEMNRAVSGAAMRIENGSVREKYDGRELRRSVFRAGCYDFLNHPSRFGDNLVYQKGNV*
contig_10033contig_100331F012869MIAIHTKYIGPTNTRGARIKAYTADWGDRKGFSATIPYPYAHSYEVCHFQAVKALVEKHNLDWNLKDMRYGDSADGKGYSFCFDLSKVKE*
contig_10033contig_1003311F009140LTHSNTNDNAVSFHYAKYLPELERFGYVIFHDDKWHLTEYGRMEMNRAVSGAAMRIENGSVKEKYDGRELRRNVFRHGCYDFLNYPSRFGDNLVYQKGNV*
contig_10033contig_100334F034109MANKINLNSDKTQFSLNLSPEQKAILQMIGNGNLKQGLLVAIDQAGHFYNCGLDPDMNLNFVGLVTTLPNQDDD*
contig_10033contig_100337F097199MSEALNRVIEEQQKRIDDLLEGNKKLIERSARVFKQNEELFEAMAKLLDYDLPSDNITDKQWADYCSLKHEVRMQMIDAGYCVRCYQFICECDEF*
contig_10033contig_100338F034503MTKNEAHQLLDKRKQGLAVPLYLVNRALVVSGDISMACPPCQAARMESTGMAQGEGVGGLPDPFMAGDNSGFNQRNEGTQ*
contig_10037contig_100379F034115MRDFAEVMLELSRAIKKVHNAKLKQDHTQAYLIGCDVTDLAQELEDVLQKERKHSIKC*
contig_10039contig_100393F058557MAIKRYENVDVNTLTFGTDAYGEYTTTITKKFTTRPLVSDVKNSLAITERYRIYQDLIQFTMNYTPWMKDIVDNQNLYSITWRNKDWRITDVLESNDRMSVTLMCYRSDPTTKV*
contig_10039contig_100397F086839MGVTFAVNGLKETLEAFEDFREQFGDKDAKSKVLIPAVREAMKPVLAMAKALSPKDTGALDRSLYITARRPTRKDMKSRYITPNDSVISLVSSRPIPRKLKQKFHSEYGNLQGKEFKKAKRKFYAEQGIMADARAIANEFGTANMSAKPFMRISLESQAQMVASKLG
contig_10040contig_100401F009140LTHSNTNDNAVSFHYAKYLPELERFGYVIFHDDKWHLTEYGRMEMNRAVSGAAMRIENGSVKEKYDGRELRRNVFRHGCYDFLNHPSRFGDNLVYQKGNV*
contig_10040contig_1004010F034150MNTGTNAQSKPQFEGDIIKFKSPHSNVWLYDICKRNEKYGWLEWVALNNPTDRQKFVAMTE*
contig_10040contig_100403F040534MNTDKSGAGRIVGLSTLGEPMSEEDFEKKMDRGELDYEYAEYLMDHRPVGNGEILIRLMERNELYDDFKDHMTRDKK*
contig_10040contig_100405F034503MNKIEAHDILDRRKQGFAVPQYLVNRALVVSGDIAMACPPCQTTRMEGPGVVQGKGTGGLPYPFMAWDNPGFNQRNEGT*
contig_10040contig_100406F097199MSEALNRVIEEQQKRIDDLLEGNKKLIERSARVFKQNEELFEAVAKLIDFRMDYDKWEEDRMKTYGSLRHEVRMQMIEAGYCVTCYNFMAHCECDE*
contig_10040contig_100407F071155MRHDIDWKKVHCKVGQRVPVYPLSDKVQPFIGEVKRIKMNRFGRVSYVIDDKEVMAEELLPAKNQTKLKMRVNQ*
contig_10040contig_100409F034109MANRKNPFRAQTDFKLELSHEQRTILEVLGKGNMTQGMKVAIDQAGHFYNCGLDPDMNLNFVGLVTTLPNQDDD*
contig_10042contig_1004210F054870MKLLTALLIALPIASFAGESPKLRYNWIEGKYNYAPKSAKLQLNWIENQYEFVVPNSQLKLNTQSNNYEYVQTQIDPYQSQIGADDE*
contig_10042contig_100422F104778METKAWLIEEFDKDNNLVWKMISFFEPDSLEWMRDLKGKKHNLVISELGVKNSKTINNIEKKYDSSKFVVGL*
contig_10042contig_100425F066774MTQENTMASLELWVKQLQGSIDVQEIAKTKPAPIPDIAIPYLVFLRPYDKVGLLAATNKRRFTKCNIEFIFDGNSRKLIDVKMINQDEE*
contig_10045contig_100454F008751MDSLIIFLIGQAVTILIGLIGIYVKVSLKLKELEIRVNVVEKQDDLISRKLDTIANQINNLCVQIQNKQDRE*
contig_10050contig_100501F001991MAIFNKNTLRQVSGFDNEIIAGELVYNQKTFWNLNFNTDGIPVDLTGATITAQIIRRQLSNIHDSRYGLTFDIADYTPAPTPVSLTITNRDDALGTFTLVIDESAWGVISSDPQLDINAENCVGFSGRIKISFPAVGDTPAQDQIIFLLFLVRSDGVVN*
contig_10054contig_100546F034115MRDYADVLLELNRAIKKLHSAKLKQDHTEAYLISCDVTDLSQELEDVLQKDANIQ*
contig_10063contig_100631F062385MGYEAKKIPSAISSDMTGEKKVSVPKMDREYGGAKSSTGATAPKGATSSDTSGERKRPIEGGVGMGKMDGIGMRESKHMGYHDGRLGECKGHMGEKVVYDHKRG*
contig_10101contig_101012F077217MNHAIKDVIECKYTVKTFQERGYDEEVPIIGFAVEDLETVIKSVVLACAERVSNESERKDILSLAA*
contig_10116contig_101162F023572MGVQIMAYTPKAKRGLYYNINRRRAAGLPAKKRGQKGYPTKKAFQRSAETARR*
contig_10123contig_101234F083714MVFNGHTIQDIDALDEATMNEITVMYADGLIGNRSLITTLGTLTAGVFNYMRPSSSMPYDLKAVIGSAYDYIYGEVKADASESLLTFMSQAPGFSINKFKGK*
contig_10141contig_101413F062760LEDLIKEGKTPQVTIKEKVSGDKRSIEANKFLWGRLYKSISNFTGYLPMEVHLLCGHLFLSEQKTINGVQVPYVRSTTDLTVDEFTSYIQNIESYFAQLGWSIE*
contig_10151contig_101512F073250MMVKESYVQKAAREGGENEVRASEDYNRMVRKQAKTDVKPAKRAIGRKLKK*
contig_10151contig_101515F036206MEVGTGITQDKMSTRGEFSPGKMPSGGFNPVWNFKNDQPNDYFTRKESPTSGGGGKVY*
contig_10154contig_101544F000961MSEIDLVKYGVLWQKVEDYERRFDEMGKKXDKMEGQLEQLIALANKGRGGFWIGMAIVSALSSVVGYFVHLFGKGPTN*
contig_10156contig_101562F024744VTQPQAQPQQIQMSNDSVNKANNSMNYTLNLVNMSLQQLWNIAYQSGFEDAQEIMKTDQGIKQ*
contig_10178contig_101781F020138GRVNPYSNICQTRQNWRMNQQQTNRLEAFWQDVEAHKALNPHLPEQALVILKSVALDALLAAQDIELIGVDDENN*
contig_10178contig_101782F011742MRTIDFVPFEWDDPDFDPETDRIEVDYEWHEGDSSVGLLSYCEKTVKWMRFDFEIKDITDELSYADLAYLKHEINRNDDASIDN*
contig_10178contig_101785F002764MRTEEDEAFEELAKRQGDWGLQGSRKHQIMRYAENMERNAVIEEVANELETRFNEPFGRDTVASFVVFIRGMKR*
contig_10208contig_102081F002764MARFGGLMNPEDEAFEELSRRQGDWGLQGSRKHQILRYAENAERNAVLEEVAQELETKFTGAFGRDTVQSFAVFIRGSEAM
contig_10220contig_102201F008128MDPIVVPKLTVSFAVDLEVEYNSFGGKTADEIADALQDELDDLLFEVSPNVKGVF
contig_10229contig_102292F067666MIGELNMKPIKKGDTYVITYSFYEDECEDTPLDVSTYSFKLQAKNSSGTVMIEWLDASFVQIDNHTRKVSLTPVQTATYTAGEYTYELEVTISTNKYTWMQGFVEVQNQVTS*
contig_10241contig_102412F036031MERIEIDVITGEQKTVQLTEQEIAEAQARYQEWLASQPTKEEQIAKLQAQIDALKG*
contig_10280contig_102801F000706MSVSDLLTIWIASISVIGGLAGFVITHLLNEIKRLNSRVDEIYNILLERQ*
contig_10280contig_102803F000763MNMKNPYVLTAGAFLAAWANSNFAPDYRSVLMAVLAGVFGYATPRKKP*
contig_10290contig_102902F043291MQTTEVHSIDYGYLQIEYEYHESDYSVGLDETFDWFAYTVEDFEDEPAGTDVTYELSAADQISITAQIKKHFYQLGGDNG*
contig_10324contig_103242F095158MKQTYIVEFNTTNTSDGWSRMEFTSITKALGFISLMVKRGCHCQIFSA*
contig_10365contig_103652F012211MPTDEEQFKYECWAIVQELDPEDVADAIQDSVALVEAIKANNAEDVASIVMKRVELKVRRLAELRVFDVVKTPWVDDIDELHEYRNLRIERVQKALDERKITAAKMDGPFKEMFDE*
contig_10394contig_103942F083939MNAEYIISSVKQTSETLFRDGEIDTVERLSYRIQMLESHIRILHQHIDNARDEIKELQLDLIAKDK*
contig_10401contig_104012F003331MSLSEKDKIFYNVWCCAYRRRYAAKLKQDWELYNREHQTLLMCLKIAKWNQFDTEKRKPSGVY*
contig_10401contig_104013F035757MMNKYAVILSSLVDGATVRVQFLANSEMTAQQLTTYYKCKSVAISDVEVFELCL*
contig_10459contig_104592F074571MSILNPYVLLGIVLSILSAFGGGYWKGSKDEVTRQQLEIAKLNAEARQKEQALLSAVTTQATKLQKANQDA
contig_10505contig_105051F053292MATLNTILSIAESVGINDQRFIGQMMSRNQRISTSEIIGVQPFGFDMKPMNYLLYSQNRELLASLRAADREYEQYLNFGTTGWANYIYYQGDMTSAEISACQYQTS

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