Basic Information | |
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IMG/M Taxon OID | 3300002664 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0085736 | Gp0056704 | Ga0005488 |
Sample Name | Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF137 (Metagenome Metatranscriptome, Counting Only) |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 6962699 |
Sequencing Scaffolds | 30 |
Novel Protein Genes | 32 |
Associated Families | 31 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
Not Available | 20 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2 | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Haliscomenobacteraceae → Haliscomenobacter → Haliscomenobacter hydrossis | 1 |
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Aureococcus → Aureococcus anophagefferens | 1 |
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → lamiids → Solanales → Solanaceae → Solanoideae → Solaneae → Solanum → Solanum tuberosum | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae → Synechococcus → unclassified Synechococcus → Synechococcus sp. CC9605 | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1 |
All Organisms → cellular organisms → Bacteria | 2 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → unclassified Micromonospora → Micromonospora sp. L5 | 1 |
All Organisms → cellular organisms → Bacteria → Acidobacteria | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies |
Type | Environmental |
Taxonomy | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | forest biome → land → forest soil |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
Location Information | ||||||||
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Location | Harvard Forest LTER, Petersham, MA, USA | |||||||
Coordinates | Lat. (o) | 42.53312 | Long. (o) | -72.189707 | Alt. (m) | N/A | Depth (m) | 0 to .1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000396 | Metagenome / Metatranscriptome | 1185 | Y |
F001765 | Metagenome / Metatranscriptome | 639 | Y |
F002272 | Metagenome / Metatranscriptome | 576 | Y |
F003199 | Metagenome / Metatranscriptome | 501 | Y |
F003383 | Metagenome / Metatranscriptome | 490 | Y |
F003787 | Metagenome / Metatranscriptome | 468 | Y |
F004142 | Metagenome / Metatranscriptome | 451 | Y |
F004183 | Metagenome / Metatranscriptome | 449 | Y |
F006591 | Metagenome / Metatranscriptome | 369 | Y |
F009043 | Metagenome / Metatranscriptome | 324 | Y |
F018340 | Metagenome / Metatranscriptome | 235 | Y |
F018933 | Metagenome / Metatranscriptome | 232 | N |
F020912 | Metagenome / Metatranscriptome | 221 | Y |
F021919 | Metagenome / Metatranscriptome | 216 | Y |
F022827 | Metagenome / Metatranscriptome | 212 | Y |
F024561 | Metagenome / Metatranscriptome | 205 | Y |
F030305 | Metagenome / Metatranscriptome | 185 | N |
F036049 | Metagenome / Metatranscriptome | 170 | Y |
F038098 | Metagenome / Metatranscriptome | 166 | Y |
F056822 | Metagenome / Metatranscriptome | 137 | Y |
F057922 | Metagenome / Metatranscriptome | 135 | N |
F066510 | Metagenome / Metatranscriptome | 126 | Y |
F067292 | Metagenome / Metatranscriptome | 125 | N |
F068528 | Metagenome / Metatranscriptome | 124 | Y |
F070743 | Metagenome / Metatranscriptome | 122 | N |
F071907 | Metagenome / Metatranscriptome | 121 | Y |
F072370 | Metagenome / Metatranscriptome | 121 | Y |
F076112 | Metagenome / Metatranscriptome | 118 | Y |
F089618 | Metagenome / Metatranscriptome | 108 | N |
F093040 | Metagenome / Metatranscriptome | 106 | N |
F103604 | Metagenome / Metatranscriptome | 101 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0005488J37274_100002 | Not Available | 578 | Open in IMG/M |
Ga0005488J37274_100027 | Not Available | 602 | Open in IMG/M |
Ga0005488J37274_100064 | Not Available | 579 | Open in IMG/M |
Ga0005488J37274_100119 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2 | 727 | Open in IMG/M |
Ga0005488J37274_100133 | Not Available | 818 | Open in IMG/M |
Ga0005488J37274_100147 | Not Available | 608 | Open in IMG/M |
Ga0005488J37274_100194 | Not Available | 581 | Open in IMG/M |
Ga0005488J37274_100220 | Not Available | 747 | Open in IMG/M |
Ga0005488J37274_100385 | Not Available | 597 | Open in IMG/M |
Ga0005488J37274_100432 | Not Available | 779 | Open in IMG/M |
Ga0005488J37274_100544 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Haliscomenobacteraceae → Haliscomenobacter → Haliscomenobacter hydrossis | 546 | Open in IMG/M |
Ga0005488J37274_100661 | Not Available | 647 | Open in IMG/M |
Ga0005488J37274_100674 | Not Available | 581 | Open in IMG/M |
Ga0005488J37274_101154 | Not Available | 695 | Open in IMG/M |
Ga0005488J37274_101162 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Aureococcus → Aureococcus anophagefferens | 628 | Open in IMG/M |
Ga0005488J37274_101189 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → lamiids → Solanales → Solanaceae → Solanoideae → Solaneae → Solanum → Solanum tuberosum | 549 | Open in IMG/M |
Ga0005488J37274_101248 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae → Synechococcus → unclassified Synechococcus → Synechococcus sp. CC9605 | 593 | Open in IMG/M |
Ga0005488J37274_101348 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 750 | Open in IMG/M |
Ga0005488J37274_101791 | Not Available | 618 | Open in IMG/M |
Ga0005488J37274_102061 | Not Available | 792 | Open in IMG/M |
Ga0005488J37274_102154 | Not Available | 605 | Open in IMG/M |
Ga0005488J37274_102343 | Not Available | 572 | Open in IMG/M |
Ga0005488J37274_103757 | Not Available | 818 | Open in IMG/M |
Ga0005488J37274_103902 | Not Available | 764 | Open in IMG/M |
Ga0005488J37274_104312 | All Organisms → cellular organisms → Bacteria | 509 | Open in IMG/M |
Ga0005488J37274_104879 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → unclassified Micromonospora → Micromonospora sp. L5 | 638 | Open in IMG/M |
Ga0005488J37274_108003 | Not Available | 597 | Open in IMG/M |
Ga0005488J37274_108260 | All Organisms → cellular organisms → Bacteria | 693 | Open in IMG/M |
Ga0005488J37274_112072 | Not Available | 539 | Open in IMG/M |
Ga0005488J37274_112670 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 508 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0005488J37274_100002 | Ga0005488J37274_1000021 | F057922 | PANSPFSDWHAQSEHSTQGSGDVVLLLPVAAFIRPRISAPEPICLFYLLEARVSKQTFARPHRLLPFESHRSEVNAPALSLRRNSELFFQSVRP*TPILACALTPSGYVRCPKPVTVFQAQSSQTSIQLPLPFRTFILPDRSAQSVARSEKLAFVSGPFSLRSPQASIIV* |
Ga0005488J37274_100027 | Ga0005488J37274_1000271 | F072370 | GSK*PVSQLVLQPACTARTWHPEYGVTLGPLLPTAGFIQQRIKAQVRVRCPVPVETRFSIRPFALRQR*LTLRQISADGSTFPACIFETIPKFPLARSAPNSRPRLAFYGRPRCDLCSKPVAKVRFRNSAPVLRLPLPVGISQSLRLVAPSLIPNVEACLCESPDFPSLPAALG* |
Ga0005488J37274_100064 | Ga0005488J37274_1000641 | F021919 | FQVTRSRSQTPRRHATAQSFASRIAGRHPFGSPPPSFKRNGSIPRGSPASFPSWNRHLEAAFHSPETTARFQATISRSKLPTCSFDALPFVRPARSDFDSPTHSGSPRCARDRYLNPVA*LPSGISNPSSDLHSPSGPFGPLRIKAFNPIPGRKVHLPSTPDSPSLPGIVSILLVPMPDHRFEVAKRSEACCS |
Ga0005488J37274_100119 | Ga0005488J37274_1001191 | F089618 | PWRLNLDGLVVQPVLRPSATPAANLQLSLPLPPLAAPVSNIRLASAALPPARPRANPPARIGVFSPGSTGGKHPACTVCYALPIDWLLTFQLALASGLQLGLRLLPTHIWCRPSARQVLRLPVLTGFRRNLRLAPAAAAAPTRAGGCPLLPHRPRTSDSHRLLFCRLCRSRLTQLALRALTSGWAFDAPLASTEPCIAG* |
Ga0005488J37274_100133 | Ga0005488J37274_1001331 | F030305 | GVFRMPLQFIGSCIVPFGFLVPVPSFLFPALSDLARRCSSGRPVPRVSDRTGDEAPSCPGSSVFSAVPADGSSSRPDSRILQLGSPQIARLPRLSTSCLAVDERPGCPVRSIIWLYRRRRFRVAPNLTSFGGTVSNSPSRPGSSLLQPLPLMVLRVAPGAPSSGFAGGDSSGCPEALIPRLCRLVAFRVSPDLPPSDICRFRFSGLPQIGFLGGSMMNPRFARTLHPRSIQLTSLQVAPKFPLPAAPRMNLQTHSGLAFLPTLRCSLNLYPL |
Ga0005488J37274_100147 | Ga0005488J37274_1001471 | F004183 | MERLRGANEDRAIPEGGPNGCEAYQRVDPEGAKTPEGERRQAAQPAKQAGKECNGLEAWMQPEAGANQQLAAESKSRTSRKTGRQVSEVAGQEL* |
Ga0005488J37274_100194 | Ga0005488J37274_1001941 | F076112 | VAIPPEPGLTGESEGAVNRTGLAKVRQRIEAAGWELRSRNGGLETGSRFGGAKGRCEMPVPAGAHAGDLQGVNPLSPKGMAGS* |
Ga0005488J37274_100220 | Ga0005488J37274_1002202 | F018933 | DSLYRPRIAPRSVLIDRCCPPIARRSTLNARRRSQIAPRSTLCARAGHGLLHVQHLESSPRVQIAPYSTLCVPRRSQIAPRSTLPALYRSRIAPLSAIDAPCRSTDISVRLHFAPCAVHGLLRAQHFKLRTAHRLLCVRRLHFVPIADCSAFLTPCLVSLADCSVLNT* |
Ga0005488J37274_100385 | Ga0005488J37274_1003851 | F066510 | MGSGALIRGRVKVAAGSKRTASQLHCMLSSDCACQSENGLLDGSLGT |
Ga0005488J37274_100432 | Ga0005488J37274_1004321 | F003383 | PQSSRSARVASLGCPVPAPFLLSRRPNPQVAPWFRAFGRAGDGRSSCPERRMPLTLPVSASFRVAPENLAFSCSARDVGPGSPLVLHLRLYRRSIIESPRCSHHSAVPTGRSSGFPKSRPFGIADDSLSELPRTLNPPAPTDGYPSYLGSRTIRFALVESPGRPGHSPLATAIDQFPGCPKSWVSHRSPILRRFESPRILVPRLTRVCFLGSPRFGICG* |
Ga0005488J37274_100544 | Ga0005488J37274_1005441 | F003787 | ESAGRLASLLPDNRFPRSPDQCFKTRRSLLSRSGPDARDGLSLARNGCSFRSLHSKVNVPGLPLRFQLAASSARSAFRLRYPVRLAPVWAASLLLARCSLHDLLEDRASSLHSPLGLLPPSGSKRSAGFAVFRPAFRLRPISLRSPPPVSICQVLSLVPITSVSAADHRSRSATSSEACC |
Ga0005488J37274_100661 | Ga0005488J37274_1006612 | F020912 | MVATVHRHGTDDSGGQGNEAGPKKDAERRDKVSIRTGKETRPRQGM* |
Ga0005488J37274_100674 | Ga0005488J37274_1006741 | F000396 | DLISQPNSPPACNGTELCPQDRRVSSLQLPAAFFRTLRINAYGLTCQLSWLEPVSRSGLSLSRNDCPSPGHHFEVEAPDLLLQHPAVRSSCPFRFRFPYVLQFALVRARSIPKPRCLTPVRHSQPFFGSPLPFGAFRALKDQSVQPDSRLGSSPSERSRLPITPRHRIHFLVGLDTGSPLQAR* |
Ga0005488J37274_101154 | Ga0005488J37274_1011541 | F067292 | ESVVQPLLRPSAPAAGPQLSLATASTGCAGFKPPTCVGCSTSGSTGGQPSGSDRCSVLRLDRWQAPGFRRLHCASARPVANLPTCVGVLPPARPATNCRLTPGADSSARLVPNFRLSPVVVAAFSLRLLLLRLLQLALAVARLPYRWRTSDSHRL* |
Ga0005488J37274_101162 | Ga0005488J37274_1011621 | F038098 | GIQDQGCHPRYLQRLRRSLSTSPFPARSSPARTSQPAFRPAARCPEGCSLVPRRALRPHPGVEVSLAFSLDPEPHGFRFGIRAIPAVLARVVSFKLRVLPRGFYPADSNQLALLTRPIRLAYRYAWRVATSSSTYPARVVRLPSLRTSDCARTVLRYLPQVHCRLTFICAGLRQVPLDFPSEPSPCGFDPAVRNPLPSPRASSYFQDL |
Ga0005488J37274_101189 | Ga0005488J37274_1011891 | F009043 | VPSDLISQPNPPPACTALSFATRVARCCPFRSPPPSFESNGSTRPGSPAGFPAWSRYLEAAFHSPKTTVRLRTAISRSKFPTYSFDTLPNVHPARSVSDSPTRSGSPRHAQDRYQKPVARLPSGSPNRSSDLHSPLGPFGPFRIKAFNPIPGHEAHLPNSFDCLSLPGPGSILLAPMPDHRSR |
Ga0005488J37274_101248 | Ga0005488J37274_1012481 | F070743 | MRGQSLACSVAEALPSCSPRRLLARHGSVRQSSLALLPARSHRLGTAFRSPATTVLFREPPWRGQRSRPIPSALILNLSSSPFGLGLPPSATFFTPPGVFHAQNPLPSFKPKTLKRPSNFRSPSGLSSFRIEALGQRLSLRSLPFMRGPIFLRSPKALITFDNYALSDHRSRFATVHQAFCSLN |
Ga0005488J37274_101348 | Ga0005488J37274_1013483 | F018340 | MFVRLKLEESRDGLVATISERDADGKIAGPPMILLVRTKE |
Ga0005488J37274_101791 | Ga0005488J37274_1017911 | F024561 | VALGQRIAKSGGRPRANGADAEPQSQTCLHLVRKLASANASPSELRGLTRRFSRRKALDGPAMRPKIPLAV |
Ga0005488J37274_102061 | Ga0005488J37274_1020611 | F022827 | VPSDLSGRRVASASALVFRTSVPGLSPGRRPEFPRLHFPSPGHPCGRPDPVFSTGVQDQGCHPRYLQRFRRSLSTSPFPARSSPARTSPPAFRPAARCPEGCSLVPRRALRPHPGVEVSLAFSLDPAPHGFRFGIRAIPAVPTRDTRFYPSELESACASYPAYSPCASIRLARRHFLLELAPYWSPNLPPLRASGSPSSLAGFRLRSYGPTVFPPSLLPAHFYMCRSSAGSSRFSFRTVALRLRSGCSEPTAFAESFFPLSGS |
Ga0005488J37274_102154 | Ga0005488J37274_1021541 | F036049 | MVALGTPLLVTVLLGGPLMGPPYTVRSSCAVETDAACPSGPGNPTDFIVRNFTDVGLAGLEIPASQLLLPTDPATEISIHHGWIPWTETTWLLLDSDARSVNQATCAGEVAKLHLSSAITDLDWLKVQLWQIPSLQPQRCAIAPTVCLTDC* |
Ga0005488J37274_102343 | Ga0005488J37274_1023431 | F036049 | MVALGTPLLATFLLGVPLTGAPYSVRIACTVETDVACPALGPGDSTDFIVRNFTDVGLATLEIPADQLLPPTDSAYEMAVHHVWIPWLETHWRLQDSQARSTHETCAGEVAQLNLSPALTALDWLRVRLWQVPSLQPQRCAIAPTVCLTDC* |
Ga0005488J37274_103757 | Ga0005488J37274_1037571 | F093040 | MRLAVAEGVKHALGVHHPKTGTDRKGPGLPINPDLSPVTRDYPRRSRVDGQSPREASATLNLPF |
Ga0005488J37274_103757 | Ga0005488J37274_1037573 | F006591 | SLGAPPSQVGGRLLDASSRGNAEFSVSWQDRRPDCSKRLLGEAFQHDSQIPCRGTAPYKVMRPLRHGLVTAVLEVGPRELPPERWPKGTGLASYPSIDI* |
Ga0005488J37274_103902 | Ga0005488J37274_1039021 | F068528 | MRTTDFCFSLPDYEYPCFVSYRHLFEAYASPLADGLASMTRRPVDLAFHDAESASVGFFRLARGMILPALPWEPYL* |
Ga0005488J37274_104312 | Ga0005488J37274_1043121 | F001765 | EHLSSLRQEIADLRDLNARLSEKGGHTAVDQTALELRTNRLREIKQELSKILNRPDDPKVWWERSRRPQQPA* |
Ga0005488J37274_104879 | Ga0005488J37274_1048791 | F103604 | EMKLTSVALCAFLMVLAGAGSRAAYGVTSKIIIKAPDPTCPPPQGTQSISFDGLVPNADGSSVNGGSVPIPVDGSTTFGDNEFANCTGETLDVLTVTIDDIPLNQQYIVLLSGDAFDGFSTGPISNSSETLELYCDPGFFGTTCDGLSGVAGQDNGVSFTIAPEPTEAPMLLLGIGGVFLLGLRARKGRKQLRVAGVV* |
Ga0005488J37274_108003 | Ga0005488J37274_1080031 | F002272 | MNANYWEQRTALIRDGAVRVLSLSTPEEVDYWRDQLKAHRRNRHELEVMTWGNHASTLRGRADYGHLDEIAEYVFQFIRTSEGKLLKFGTVAFSKSVDRALARQVIDVVGTRN* |
Ga0005488J37274_108260 | Ga0005488J37274_1082601 | F004142 | PDYIATEVKSEGSEGERYRVRDFWKGHRGFEIFRERFSEDFAQLDRRIVDELIEKQEFVGAYYEANEEDQGLS* |
Ga0005488J37274_112072 | Ga0005488J37274_1120721 | F071907 | VIVTVAVPTVAPAEAVSVRVELALPFAGGVTGLVENVAVTPEGNPDALSVVAESN |
Ga0005488J37274_112072 | Ga0005488J37274_1120722 | F003199 | LSSDPEVPINSMVVVPVGARLVALQITVTFTLPFAGGVTGLAEAVADTSVGNSLTLSSTAEWNPFTLVTVSVVETLPLSSIVKDDGDKDKVKFGVPEEAFTVNVIVAL* |
Ga0005488J37274_112670 | Ga0005488J37274_1126702 | F056822 | MSRVNGDKSRYNRVRRQNIAKRMRNRKLMKNLEAQVKPAVAAAGSEPKPVVA* |
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