NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300002495

3300002495: 454 Fosmid Sequence



Overview

Basic Information
IMG/M Taxon OID3300002495 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0110103 | Gp0089055 | Ga0023007
Sample Name454 Fosmid Sequence
Sequencing StatusPermanent Draft
Sequencing Center
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size108562359
Sequencing Scaffolds32
Novel Protein Genes34
Associated Families34

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available8
All Organisms → cellular organisms → Bacteria → Proteobacteria6
All Organisms → cellular organisms → Bacteria6
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → gamma proteobacterium SS-51
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium Pan2161

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMangrove Soil Microbial Communities From Bertioga, Brazil, Sampling Enzymes
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Oil-Contaminated Sediment → Mangrove Soil → Mangrove Soil Microbial Communities From Bertioga, Brazil, Sampling Enzymes

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Sediment (saline)

Location Information
LocationBertioga - SP
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m).3
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001314Metagenome / Metatranscriptome725Y
F001436Metagenome / Metatranscriptome695Y
F001965Metagenome / Metatranscriptome610Y
F002203Metagenome / Metatranscriptome584N
F003187Metagenome / Metatranscriptome502Y
F005490Metagenome / Metatranscriptome399Y
F009818Metagenome / Metatranscriptome312Y
F010394Metagenome / Metatranscriptome304Y
F010721Metagenome / Metatranscriptome300Y
F011352Metagenome / Metatranscriptome292Y
F011594Metagenome289Y
F011939Metagenome / Metatranscriptome285Y
F012756Metagenome / Metatranscriptome277Y
F019895Metagenome / Metatranscriptome227Y
F029006Metagenome189Y
F034415Metagenome / Metatranscriptome175Y
F037757Metagenome / Metatranscriptome167Y
F045025Metagenome153Y
F046383Metagenome / Metatranscriptome151Y
F048676Metagenome / Metatranscriptome148Y
F049002Metagenome / Metatranscriptome147Y
F049640Metagenome / Metatranscriptome146Y
F054877Metagenome / Metatranscriptome139Y
F062769Metagenome / Metatranscriptome130Y
F069422Metagenome / Metatranscriptome124Y
F071910Metagenome121Y
F071915Metagenome / Metatranscriptome121Y
F074893Metagenome / Metatranscriptome119Y
F076890Metagenome / Metatranscriptome117N
F082105Metagenome / Metatranscriptome113Y
F087388Metagenome110Y
F089563Metagenome / Metatranscriptome109Y
F091661Metagenome / Metatranscriptome107Y
F103505Metagenome / Metatranscriptome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
BRMGV_1004388Not Available769Open in IMG/M
BRMGV_1006248All Organisms → cellular organisms → Bacteria → Proteobacteria3306Open in IMG/M
BRMGV_1012930Not Available648Open in IMG/M
BRMGV_1013478Not Available562Open in IMG/M
BRMGV_1018209All Organisms → cellular organisms → Bacteria1553Open in IMG/M
BRMGV_1022352All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2262Open in IMG/M
BRMGV_1025655All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria2420Open in IMG/M
BRMGV_1026476Not Available790Open in IMG/M
BRMGV_1027670All Organisms → cellular organisms → Bacteria → Proteobacteria1474Open in IMG/M
BRMGV_1028425All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2724Open in IMG/M
BRMGV_1033187All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1124Open in IMG/M
BRMGV_1036475All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria4040Open in IMG/M
BRMGV_1036900Not Available514Open in IMG/M
BRMGV_1038803Not Available619Open in IMG/M
BRMGV_1042465Not Available1770Open in IMG/M
BRMGV_1053473All Organisms → cellular organisms → Bacteria1465Open in IMG/M
BRMGV_1053502All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae5481Open in IMG/M
BRMGV_1054348All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales1510Open in IMG/M
BRMGV_1056078All Organisms → cellular organisms → Bacteria1300Open in IMG/M
BRMGV_1058064All Organisms → cellular organisms → Bacteria865Open in IMG/M
BRMGV_1061743All Organisms → cellular organisms → Bacteria → Proteobacteria2160Open in IMG/M
BRMGV_1061872All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → gamma proteobacterium SS-52050Open in IMG/M
BRMGV_1066339All Organisms → cellular organisms → Bacteria → Proteobacteria899Open in IMG/M
BRMGV_1080626All Organisms → cellular organisms → Bacteria834Open in IMG/M
BRMGV_1091881All Organisms → cellular organisms → Bacteria912Open in IMG/M
BRMGV_1093851All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria765Open in IMG/M
BRMGV_1095617Not Available845Open in IMG/M
BRMGV_1096866All Organisms → cellular organisms → Bacteria → Proteobacteria1665Open in IMG/M
BRMGV_1103520All Organisms → cellular organisms → Bacteria → Proteobacteria1669Open in IMG/M
BRMGV_1104680All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1130Open in IMG/M
BRMGV_1110551All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1881Open in IMG/M
BRMGV_1111656All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium Pan2161357Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
BRMGV_1004388BRMGV_10043882F091661MQGTRDIHQTAGSDDGNGLDPREAARLLVQTEREAQRQFSLSPLWITAVMGAIVLVAYGALWFSTRAQHPYIGPSLGVVGLVYAVVAVAIAASVKVYRRATAGVRGLSVRQQQAEGV
BRMGV_1006248BRMGV_10062483F029006MNKINIALMAIYFLGDPDLQYLSWLGDLKLYVVAAALSLVSMPWIAKQLDG*
BRMGV_1012930BRMGV_10129301F003187MKKFLVLVCSVILAIGVAGCAGKGKVPIGKGKAPVVHTKG*
BRMGV_1013478BRMGV_10134781F071915LELGHMAELTEAMLARVKAAFVTRDFTDLSQQNDQVVVLRDAVLGYLQRVGRGQLSDAESDEHARLVAATGDIENMSVAISRELAPLARALKDAGITPSDETRALFERLFETIREASQSALKALVDSDERAAQAVVACRDTVWNLASELHRQQAARLARDDPERLPQAPRAGGHTGQAASRVQCRR
BRMGV_1018209BRMGV_10182091F011939MILSEMKNRKDSKMTEKTINKIEEVLRKEVQKIDQSVQVVAVEQGKKKNSYRVTLLKEGKSASADLQKDLIEQHLAQKGQGRQLRKALAKAVSHLSIRYGR*
BRMGV_1022352BRMGV_10223523F011352MARYFFRLTDGNQVLNNHKGIDLPGPAAAREDAVALARDLRLGAVMPGFKWGGWFVLVVDERGHKVDEVPVGDEVGER*
BRMGV_1025655BRMGV_10256551F048676AIFKFAVDTRKMLFRYAAYAAASDAVDAVKLEILKGFKLLKSKMTEYLKNIIKLNILKI*
BRMGV_1026476BRMGV_10264762F010394MGEMHRPGRPATGDVRRWQADFEELELRMDALRQAFTEGIRSYEMTEEIVERIHARFDDVGEQVHAMHCTYPFGGWPGQEVCRFEPPVQKNEARPGRA*
BRMGV_1027670BRMGV_10276702F001965MRRSIYKGCLGLAALCVTSATSYAEKSYLCAVNEVYECVAVTGCSRVSLKDANLAGVMLLDVEKKQLSLAPLGGDARTDDIEGLTVTDDAILLHGTGKSKKDRTWSAVISLKTGNLSAGVSTLDSSLALTGTCSAKP*
BRMGV_1028425BRMGV_10284252F089563MATLLTSRPKRFYQRGTVACQKCAAPIYIYKLKALPDEFSLRCSKCGARGFYAARAVVVEDMPERRKKPRK*
BRMGV_1033187BRMGV_10331872F082105VLIGRDPPRCAGQPNATVQPAVAGTVMPIDSVGSGRVNEKK*
BRMGV_1036475BRMGV_10364751F001314MWVLFRVPCPTSAGETAEDLYQKRVEGITVAMQESARELGCRFHRAWYADDGSEFITIANWDSREGASEFFQRWQIEDEEGETATFLEGDVGLVPLV*
BRMGV_1036900BRMGV_10369001F062769MTDLSTFSAWLVSATRSAILVVRERVHQARRQNPAQRSEANALLKRITQELAARGEYDRRCAA*
BRMGV_1038803BRMGV_10388032F071910MRRIVVAALIAALLGAFGLALGRSAANAVERAVERHASSVERALSL*
BRMGV_1042465BRMGV_10424652F046383MKLRFISLVLGVLLGSALIPASALACEPEQDGCLGCDDEELPVCLQAFVMEICQASGSPNNCDSVRAYDDVERYVLISTGSHMSRIRSMVRSARKYQLH*
BRMGV_1043799BRMGV_10437992F076890MVKTCKQSAAVVVIAAFGLFATACSTLEVSDYCRHSEERSIREADPETLGLVLGLEARQAMETPFVIVRSLSEKNPGASLTLHATPAAHPIPVSLDESRCARIDWGTYTLTVDPDEWNAFWQDDRNARFEIAIAFLGDSRPLLVSSFGAAIVDTAAAEALVSCGCYWN*
BRMGV_1053473BRMGV_10534734F010721MQHRRRVFVETPKGRISAGFSVPVTAAAADVSMRLRERGRAPYRVRFDREQDCWIAAVIDWRRAA*
BRMGV_1053502BRMGV_10535023F009818MPEIYPKVTRATLKKGAKRTSEGKGRVALPGVKTDAKHVNATDKCGYKANRELAEMISKAVEAKKSADKNGAHFVLGWRLYPNRGHPRWKRKDVHSCGCGCGCSS*
BRMGV_1054348BRMGV_10543482F012756MRIRSAKIEELKPKPKERALSPRQLAALKRDDEIRRALGRLKSDDDIIAIELDKSEKVPTMRAAVKKAIAAHRPGTNMAIRGTTIYLSTGKLPGGRGRRPKAG*
BRMGV_1056078BRMGV_10560782F087388VAKTVSELAREIIHRLDHGEPLESAISMVLAGEEVDEQVLAELQMAGLRDAVVHEAFHELLDWHASFGGLAEFLEIDEAIHRTAERIGHDFDQDMPEHVPDSGPRLVH*
BRMGV_1058064BRMGV_10580642F054877MKVFRNLRVLARFSPRTTDDLDPDLLNLVGTDAVFSYHKFVDDEDTPYANQWLLTSEDQRFGEYWYPESDLEILRVMRSAQG*
BRMGV_1061743BRMGV_10617433F049002MAKTKLDEAQAELTRAIENDAPCTFDEPIPVLVTLDNGVKYEGVAIKVEPADNVFPRGLVMVRTGNTDIGVPVNYIKGK*
BRMGV_1061872BRMGV_10618722F074893MMASNGLQATANNGALTIRITGPMDLLLTSALREFCHETGAVYRRYIIDLQDVSIVRDSGLALLLMLKRLASRTGATLHVINGSSDLMRRCLRLGISPY*
BRMGV_1063454BRMGV_10634541F069422LINPRHCKRGDCVPRNANIRILAQSGGWYSVDIDEDGHPDGYVRASDLTSDLATMPPWERS*
BRMGV_1066339BRMGV_10663391F045025NPDAYALIPKDIAVQLPTYSGNVEVSVKEDDVWEADRITQIEERFTQWLAS*
BRMGV_1080626BRMGV_10806262F037757LQTYIRRHAPFWLSLIAGLAIWEIAGRSSSPAFMVPFSETLVRLWQLINGGGFVPAFIDSSQLFITGFV
BRMGV_1091881BRMGV_10918811F034415GTMTSLGHKKSAGLVEGEAYRRIMAGEAPETLAEFAEQLLDWLATSYPEASSMTRAAVEDQIRDTWHRRHELILGGGI*
BRMGV_1093851BRMGV_10938511F103505MDPMLLREYQTKLGDWLAQGYQLMVDDIDGELRITVLFVSPGTAAAKEREQEFWPQTAEIVQLLSDNGVTISKALAGPRPWAGPHPEDR*
BRMGV_1095617BRMGV_10956171F005490IPVEQLLKDARRLGSVGTFFITLGWIAVIYALVAGLLWWIDLASRDAFNILEAFAISASAVGLPIFGAFVLAGLGYALRLFALYVASKAG*
BRMGV_1096866BRMGV_10968663F001436MAIGKDIAPLLELLKMEADYWPHSGAGEVSPDESFRRDQFLLKIWPEACRRTGVGTREFPPELINLWKGGLGHSN*
BRMGV_1103520BRMGV_11035204F002203VQTRREAVILMTAIPLLSTHAAAQPDRLDALFNRPAENLSVPSRVRQRYAILAYYIQLLNLQGPMRSREDIAAAIKTYQLVGESIARSDARFEGEVQASFVQSLREAFSKSEEELRAFLRQVGIDPRLLAASVIEESLASNMLFYGAETRVTNVSDMVWCCFPFCFRRPT*
BRMGV_1104680BRMGV_11046803F019895MQSQIENYRAKAKEFARLMIVAKSLRHSRQYRKLAEMYWALALGEESDRAEPSKTYVKRNAT*
BRMGV_1110551BRMGV_11105511F011594MTPTEFQKLLLMADSMSSSCAPRKSDYGKGYHMGIQIHFSNTHRGSLPDHYSIAEIARSNGCRIVHAFARGYIDGYMGLKPEYSG*
BRMGV_1111656BRMGV_11116561F049640MERRMINVELLPHERAALLKGNFTIDEVCEQLEACASSSDVETITFTATDIHFLAGDLTHAIVKRGCRDQDVVDLSERLDYVDETGDGSLDGWF*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.