NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300002481

3300002481: Deep oceanic, basalt-hosted subsurface ecosystem from Juan de Fuca Ridge flank, Pacific Ocean, CORK Borehole 1362A_J2.573



Overview

Basic Information
IMG/M Taxon OID3300002481 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0090290 | Gp0057564 | Ga0004278
Sample NameDeep oceanic, basalt-hosted subsurface ecosystem from Juan de Fuca Ridge flank, Pacific Ocean, CORK Borehole 1362A_J2.573
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size169908118
Sequencing Scaffolds2
Novel Protein Genes2
Associated Families2

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia1
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameDeep Subsurface And Oceanic Microbial Communities From Witwatersrand Basin, South Africa, And The Canadian And Fennoscandian Shields And At The Lost City Hydrothermal Field
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Volcanic → Unclassified → Deep Oceanic, Basalt-Hosted Subsurface Hydrothermal Fluid → Deep Subsurface And Oceanic Microbial Communities From Witwatersrand Basin, South Africa, And The Canadian And Fennoscandian Shields And At The Lost City Hydrothermal Field

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine hydrothermal vent biomevolcanohydrothermal fluid
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Subsurface (non-saline)

Location Information
LocationJuan de Fuca Ridge flank, Pacific Ocean
CoordinatesLat. (o)47.76Long. (o)-127.76Alt. (m)N/ADepth (m)454
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036104Metagenome / Metatranscriptome170Y
F041287Metagenome / Metatranscriptome160Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI24020J35080_1016178All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia1595Open in IMG/M
JGI24020J35080_1046033Not Available586Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI24020J35080_1016178JGI24020J35080_10161784F036104MGQDGIPVSIGMIIAAAILGACFVLGMVLMAVLFASGGNLG
JGI24020J35080_1046033JGI24020J35080_10460331F041287MERCNICGKEAAYICPYCDKKFCKQHMELRYVGQDRGFKSRYMCPSCWKKKQVVLNEKMISTKNYKPKKYFY*

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