NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300002354

3300002354: Freshwater microbial communities from Lake Mendota, WI - 21JUN2010 deep hole epilimnion



Overview

Basic Information
IMG/M Taxon OID3300002354 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063444 | Gp0055644 | Ga0003601
Sample NameFreshwater microbial communities from Lake Mendota, WI - 21JUN2010 deep hole epilimnion
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size31220231
Sequencing Scaffolds21
Novel Protein Genes24
Associated Families23

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria2
Not Available16
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Oomycota → Peronosporales → Peronosporaceae → Phytophthora → Phytophthora infestans1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Paraneoptera → Hemiptera → Sternorrhyncha → Aphidomorpha → Aphidoidea → Aphididae → Aphidinae → Macrosiphini → Acyrthosiphon → Acyrthosiphon pisum1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameFreshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater lake biome → freshwater lake → lake water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001570Metagenome / Metatranscriptome669Y
F004229Metagenome / Metatranscriptome447Y
F004542Metagenome / Metatranscriptome433N
F004780Metagenome / Metatranscriptome423N
F010896Metagenome / Metatranscriptome297N
F024549Metagenome / Metatranscriptome205Y
F031358Metagenome / Metatranscriptome182Y
F035561Metagenome / Metatranscriptome172N
F036210Metagenome / Metatranscriptome170Y
F048940Metagenome / Metatranscriptome147Y
F058096Metagenome / Metatranscriptome135Y
F058683Metagenome / Metatranscriptome134N
F072274Metagenome / Metatranscriptome121Y
F073458Metagenome / Metatranscriptome120Y
F073535Metagenome / Metatranscriptome120N
F074372Metagenome119Y
F078245Metagenome / Metatranscriptome116Y
F085212Metagenome / Metatranscriptome111Y
F093256Metagenome106N
F096500Metagenome104Y
F096716Metagenome / Metatranscriptome104N
F098293Metagenome / Metatranscriptome104N
F098811Metagenome / Metatranscriptome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
B570J29626_1000633All Organisms → cellular organisms → Bacteria3171Open in IMG/M
B570J29626_1002219Not Available1662Open in IMG/M
B570J29626_1002359All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Oomycota → Peronosporales → Peronosporaceae → Phytophthora → Phytophthora infestans1609Open in IMG/M
B570J29626_1002711Not Available1493Open in IMG/M
B570J29626_1003029Not Available1395Open in IMG/M
B570J29626_1004900All Organisms → cellular organisms → Bacteria1041Open in IMG/M
B570J29626_1007571Not Available806Open in IMG/M
B570J29626_1007679All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage798Open in IMG/M
B570J29626_1007682Not Available798Open in IMG/M
B570J29626_1008466Not Available754Open in IMG/M
B570J29626_1008542Not Available750Open in IMG/M
B570J29626_1010485Not Available657Open in IMG/M
B570J29626_1010641Not Available651Open in IMG/M
B570J29626_1010807Not Available645Open in IMG/M
B570J29626_1012113All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Paraneoptera → Hemiptera → Sternorrhyncha → Aphidomorpha → Aphidoidea → Aphididae → Aphidinae → Macrosiphini → Acyrthosiphon → Acyrthosiphon pisum601Open in IMG/M
B570J29626_1012726Not Available581Open in IMG/M
B570J29626_1013354Not Available563Open in IMG/M
B570J29626_1014373Not Available538Open in IMG/M
B570J29626_1014976Not Available524Open in IMG/M
B570J29626_1015662Not Available509Open in IMG/M
B570J29626_1016011Not Available502Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
B570J29626_1000633B570J29626_10006331F096716MKTKNLFFLLITPLSVIFTLLISSALWSAPAPLIPDSGPIVYLLKPILVSLVYVLGLLVVALLISGGIFVPFQENNSRFAAKFSLALSGISFAAAVFTLTLALSQPLSVVAQIEVIATYGWDVSSVRALLLISLIALVSFLVLQRPNLDRVGLVA
B570J29626_1001145B570J29626_10011454F098293LAKYQFKRGSPLQEYLQTKMREKYRIPTITFTLQNLISDLGGIINKEQLFDPLNPDIILCDSDLEVALNLKALRVTDLKHYILSQLVCIVPYQTSFKNPYYAIETRSDRNRRYFNKLEIQFKQMDQQMSQRVFKKAESYKLKPLLKRALKRMPSFPHHQRTFKFNEICMYLEKYFESYEDDLFDPRNVNLCMVHNDPLGXAFNVNAFHICQTTHLLQHNIIAV*
B570J29626_1002219B570J29626_10022191F035561MDLVTPNFRLAESVLETLSESQLECYICQHGPREFETQKLRDIVAANMQPDIYPKRKDVYLALAIYLYRAGHTRTVLNALQFEGFAPGPSPDRRMDESTDFGQPRWWSSYEWALGGRRPTFRGKTIWNWQRL*
B570J29626_1002359B570J29626_10023592F096500MKTEQQEFIKSLVDSKTKITMKDFFKTIHGKFYARQDISFMEYFLELTENEGEFIVHHEKLIEYGIMSSIRSSAVKVKLDALGLVEDEDYSELQDILQLRPQGGTSTKNVYMLTPEAFKTCLMRSRKYPNQKADPT
B570J29626_1002711B570J29626_10027111F035561KYASSPDLIIFFSLYFFSFLSFFCNMDTVTPNFELANARLADLSERELESYLCHHGPRRYDRNELRTIIAANMQPDIYPERINVYLALAIYLYRAGHTRTVLNALQFEGFAPGPSPDRRMDESTNFGQPRFWTSYEWTLGGRRPSVRGRRTSMNWQLL*
B570J29626_1003029B570J29626_10030293F093256MIKTRVGKLVKVKNQDKKKAANNTYQAVILNSNGQYNAYLFTDVEITVAAERARKNIEDQVERSVISKLL
B570J29626_1004900B570J29626_10049001F098811NLSLAILDRCDLPKVKVGRLEIDQPGLFAQGPDEKKALSGLTEGLLIIIINILN*
B570J29626_1007571B570J29626_10075711F001570MSLFYWLLLIAAISLTESIITSTGRSQQISNVPHNTTTHTTNENQEETSLQLPRVKRQTVETLKKFINITQAIPVKTVYIPVRMHQFNKMIPFQQVYSQITNLKLTLRNLDPTSNTRTEEIQGKDVNYVKSSYPRSMNQNSLQCAERGGYVASITQIVKDRLDTRTPTATRDEISISNKILTCMFTEVNKRGLSCIEYLVNIASTLGLEFYRGTPPQILMEIVTLFP
B570J29626_1007679B570J29626_10076792F085212TKDWAHPCPNHIYYLTDDKSKLVAFYNVVTKKVTKMSKPIRFDTRYRTFKELK*
B570J29626_1007682B570J29626_10076821F004542RPITLPPIYTELSEIDVYTEMARLDLQYDDLRTDKPRTASLARLCKALCIGRYIALGNQPPLQYKSWALVCPMNFENPDMPHGEQSHLAVDNSTKFIIKSMKHRDTIKDASGKTGHMIIPELYHYNNCMCASDCIANNQESLHFLRICAPRSLRQQYAEADHLPDARNAVSIGKKYGNSHTVYYSSVSVFGTVTPQMICRQPITELTRKSPIFRTPQYSHVDMSNDLHLIRAIGACLSRQEIHQYTKNFTESCKMDETTEETGNL
B570J29626_1008466B570J29626_10084661F058096ALQRLATLGMIGPDIPLKLTPEAVDDYVMIDNHRNILFESDFEIASIFNALAMSECDEEPEDTEAIIDLILEYKNNRTEIVKFALSHQVI*
B570J29626_1008542B570J29626_10085421F031358TPTIDRTDIRDSPVGMQTTDRINTLGSLAGIXLDLDTIKGLPVGDSQHLASGLHLETGVDRGLIIDRSQSLLVDQGHPDIIPIQDKVGHPTERTGRTGTVPCPQGTPTLS*
B570J29626_1010471B570J29626_10104712F073535ALEENEDNLDNETLTVDNVIVPKYYTFDVETYEDRVEXVHVXYEGQVEGYFNEDQLNRSFYELGQGEVFDFYDFRETDRDYGDGEGNGIELRSITMVSDVIPESNKKRKVMKESKLDSFIDSLNESETKFLIEKLQKKLF*
B570J29626_1010485B570J29626_10104851F073458MSAKLIALASEIVDTNPAGAQLIVNLTKAETGADIIEALDNYDSTVLENHTEPVDSEDDDYVTLTDSEGTVTYV*LQFN*
B570J29626_1010641B570J29626_10106411F004780IEISVPEFINPFTVYYVKTIPIAHNTTNRIYTTLKLENKYVAVDPSGSTFLYKPETCATKXTVTTCNPAMLEIHKEAQTCIEALMSPSQIGAGKCIQSMKVEKVDQQSYIYKTENTVIRIFSPFPDTVSTLCGHTLNQNAGTLKEGYTDLSFKSDCVLYTSQMVIYSPYKPTIEETIKPLLSTPDLSMEIESLLSDIHEVHRINLTTLGQEFQTLDI
B570J29626_1010807B570J29626_10108071F004229FETTNFTTSPPPYNKDPKNEMYPNVPSAPTMTSPATLQLGKSKPHNAELQESSWEIINVNNLGAKLTRQKSTPALYFHGRTNKVYTLEGTEIPIERPPRNLIIEYQETLLTLPQFSLEQMRLILTNDTIAYDKNLKAYYTPVINSSKRFYHFAYRSLPQPDQ*
B570J29626_1012113B570J29626_10121131F010896ERHVLPKAIPYHRSQRSPSSEGRGGRYSRPGSFGRNVKTMVVKESGSADQKKVRFPPPKNWNPDAKWTQNCVMFKECGEKHAPWACDAFKKLSPQQRLKKIEERELCHLCYRHLQGRDCWSKDKVPNCGEDGCKAAHHHLLHGALVQGRVMIVQDISTKKAGVFLCREDVRVEGAGGTSSLHALYDWGATVTLVTHAAAA
B570J29626_1012726B570J29626_10127261F078245GEAVESVAVSSKSDDKQQATQRNTHSVRESLWWIPVIWRALKWFRKHNRKRNVTTVRLRKDEEVIIRKKDSPL*
B570J29626_1013354B570J29626_10133542F036210MRNRILTEKNRLEVQRKYIDHILGSLDFMEIKDRLRDYLDTEKTFESNAALEAEIRHEAPDVLVDNWEDMNEPATLTKGRK*
B570J29626_1014373B570J29626_10143731F072274ENTEMDGYISPNGLWAAVPYGKRYISIYNGEQICLHNTLETAKKFIQKQNRKSK*
B570J29626_1014976B570J29626_10149761F074372MTESDDEKTRKLQDKVYWLELRVKLLQERNKELRQWITKLTNKNHPAR
B570J29626_1015482B570J29626_10154821F058683SGLNINIRKTTALCINTSPRVIQGLNQMGIETPETCKHLGLHLGKNIEDTMEITMRNTEPKRIKRRILGTTPPTDILHRALLINTALIPIYNHIFMALPVQKEMTKEMTKRLHQEILDFLWTKQHDGETIQKRRLVAKDRIPASFNRGGLQVPHPDDTAEGLHLNLLQKI
B570J29626_1015662B570J29626_10156621F024549LEYTYQFADALQAFEAFAKCYDVGFADELATYNLSMPNGKMYTKNFNRIGLVSQK*
B570J29626_1016011B570J29626_10160111F048940PTQDPLFI*IKMTAAQRMEKQFFINFISLINEVQGKQKLPSQVGSYRKSAWVKQVSNPKQKKDALSLV*
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