NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300001823

3300001823: Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM25, ROCA_DNA015_2.0um_2o



Overview

Basic Information
IMG/M Taxon OID3300001823 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0096913 | Gp0056134 | Ga0016827
Sample NameMarine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM25, ROCA_DNA015_2.0um_2o
Sequencing StatusPermanent Draft
Sequencing Center
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size13905559
Sequencing Scaffolds13
Novel Protein Genes14
Associated Families13

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available6
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae1
All Organisms → cellular organisms → Bacteria1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Aokuangvirus → Aokuangvirus SCBWM11
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1
All Organisms → cellular organisms → Eukaryota1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → plume front → planktonic material
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationAmazon River plume to Atlantic Ocean
CoordinatesLat. (o)10.2885Long. (o)-54.512Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001478Metagenome / Metatranscriptome687Y
F004358Metagenome / Metatranscriptome442Y
F005911Metagenome / Metatranscriptome386Y
F028825Metagenome / Metatranscriptome190N
F031118Metagenome / Metatranscriptome183N
F033052Metagenome / Metatranscriptome178Y
F046429Metagenome / Metatranscriptome151N
F047358Metagenome / Metatranscriptome150N
F051986Metagenome / Metatranscriptome143Y
F056303Metagenome / Metatranscriptome137Y
F063725Metagenome / Metatranscriptome129N
F093788Metagenome / Metatranscriptome106N
F102647Metagenome / Metatranscriptome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
ACM25_100431Not Available613Open in IMG/M
ACM25_101107All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage705Open in IMG/M
ACM25_103735Not Available605Open in IMG/M
ACM25_105872All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae620Open in IMG/M
ACM25_106495All Organisms → cellular organisms → Bacteria612Open in IMG/M
ACM25_110877All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Aokuangvirus → Aokuangvirus SCBWM1584Open in IMG/M
ACM25_111038Not Available730Open in IMG/M
ACM25_112004Not Available886Open in IMG/M
ACM25_112789All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes581Open in IMG/M
ACM25_114841Not Available528Open in IMG/M
ACM25_117492All Organisms → cellular organisms → Eukaryota576Open in IMG/M
ACM25_118356Not Available804Open in IMG/M
ACM25_120511All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria585Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
ACM25_100431ACM25_1004311F102647IQEAVKNTKAKKVLEGLRNHLAVDSALEKESIKEAVIDGHNQINEASSKLESVAKENAVLKEELDQVKADLVLEQKTAGLDKRAQKYARKVLDGKSAEFINENFDYTMKLFKKKESNRLDMLKEEALSTRDNVDRVIYEHNTEEVIEESSNPYMDELSKY*
ACM25_101107ACM25_1011072F033052ANILIFINATLFYIFVFGREIKALARLNKMEKILLRVGLSIPSMGALYNVLVGQYPPIPEIIINVGYASLWTWASIFHYNTFVKNGK*
ACM25_103735ACM25_1037351F046429EIAIIEGDLIVAKNVVTEARRIIGNVGDILVESKKRQVLKG*
ACM25_105872ACM25_1058725F093788ITTMTEFNPRSYILTQLAYAEEQLMIADDMYSKITWGNRCDALEAALADLEAA*
ACM25_106495ACM25_1064952F031118VVTQSRCEALAETLAEAEKLKMYRSDGTTYCEKCDSLVVRIQSALADVHVEDLTADEIEIIKSIKEKVISEEVFAKSSS
ACM25_110877ACM25_1108771F063725TGTPAVRPEYYIRERRVVRAEITVERTINMTGLGGTGLIGSAFYIDNVFSD*
ACM25_111038ACM25_1110381F005911KGKKGNALLLATAGAIAATFSVYFFVSLTTLNEDSKQRVAHLYNAYQMGQALKAKIDGADINQARLGSGTEDDLEAPIDSVFHNGEFITLKQMVKKAIIIAADDPTATSRAGVDMAYDLDSSGVLIKFADADGNVIAPTETGNGLDTIVADVQLFVNLAGTPDVASNSPYTDGEPFYYILMETATSGLAADDITVDLVQFPAGILATNDGGPQAEVSVILPQDDED*
ACM25_111880ACM25_1118801F028825MSSTALQEALDSFTELTDTLQECIKSHDIEGAMTLAKERHDALVNLLEDANIDQTQRANCADTTLGHLLKEQLLAKSNSDQNR
ACM25_112004ACM25_1120041F047358MNKKYIIIGAVVAAIALFTMCGKCEAQEVVKEKNWELNTEVGYYDKRISGGLYGAQDSAYVKASTKLGNFQGLAFVGSLEYVNTEDYQLHGTIGTYLNTVVGGIDTRLVVHTGENADTTFELNGAYDLNWFEFVDTSVTVAFEDGSEAGTSTDSIITTPAFNVSKTFDAKYVDVTVGGEYGQSFGYDEDFEYLHGYVRVKSTINNVIPVFVQFNALKNDLGIVNDISSEGTDGDFDTSVTVGLAYSF*
ACM25_112789ACM25_1127891F004358QLNCQTSYKYLYNKNDMFGLITMLLTTLGATGMGSMLKIVAGTIQSINDSRQQKAQRELARDLAMSNANAAFQKAVFEGGSEQESMFTRGTRRIIALIGMFNFATISILCTIWPSTTLVTFTPPENKESISILFGLVKFPRGADVTTAITTGHISLVSIATLGAIIGFYFTPGGKN*
ACM25_114841ACM25_1148411F001478LRGKVVAVSGGVDNENRNIVVEHKNGKVHQRWRVVYVDEYEKEPTKGQLNKKFGLYVERDFYVVSALPSGRYLDIPDNRNLAIKIKNGRKQQVWYFHQQSLTIRTYSNISSRW
ACM25_117492ACM25_1174921F056303SGHVWDYGADNCIKYEINMGVHSKYTGTYYVKCDAVDCCKDISPAGKIPDVKKWDIGQAKKSTITHMEATDLDDLDGHVTGADTWLEDISALKAHFKYTYYVHQAENGDIISHAIDYEAPTVAPGRILYGNFTVKHLEELDAFREVFKAPAACMANNVLHCNDETMKKWDAKFQGRSTFSAVAV*
ACM25_118356ACM25_1183561F005911KKGGGQKDNPTNKKKGETMCLKDRLLQMLKSKKGNALLLATAGAIAATFSVYFFVSLTTLSEDSKQRVAHLYNAYQMGQSLKGKIDGADINQARLGSKTEDDIEAPIDDVFHNGKFISLKTMVKKAIIIAADDPTATARGGVDTPYDLVNSGVLIKYADAGGQVITPTTTGSGTATIVADVQLFVNLAGTPDADSNSPYVDGEPFYYILMDANTAGLAASDHTVDLDQFPAGILSSDDGGPQAEVSVVLPQDAED*
ACM25_120511ACM25_1205112F051986MTTMSITAITCSICDKVANFFKDVYRNIKFGMQMSANRRVARELVHLGFHHQKEMNQILQRMNDQAINEYHKRY*
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