NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300001676

3300001676: Black smokers hydrothermal plume microbial communities from Tui Malila, Lau Basin, Pacific Ocean



Overview

Basic Information
IMG/M Taxon OID3300001676 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0096894 | Gp0056629 | Ga0012486
Sample NameBlack smokers hydrothermal plume microbial communities from Tui Malila, Lau Basin, Pacific Ocean
Sequencing StatusPermanent Draft
Sequencing Center
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size107945955
Sequencing Scaffolds34
Novel Protein Genes35
Associated Families31

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus1
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique4
Not Available14
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → unclassified Chromatiaceae → Chromatiaceae bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. IMCC90631
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameBlack Smokers Hydrothermal Plume Microbial Communities From Tui Malila, Lau Basin, Pacific Ocean
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From Tui Malila, Lau Basin, Pacific Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine black smoker biomeblack smokersea water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Subsurface (non-saline)

Location Information
LocationTui Malila, Lau Basin, Pacific Ocean
CoordinatesLat. (o)-21.99002Long. (o)-176.568744Alt. (m)N/ADepth (m)2000
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001756Metagenome / Metatranscriptome641Y
F005783Metagenome / Metatranscriptome390Y
F006552Metagenome370Y
F007828Metagenome344Y
F011448Metagenome291Y
F019844Metagenome227N
F026708Metagenome / Metatranscriptome197Y
F030294Metagenome186Y
F032684Metagenome / Metatranscriptome179Y
F037935Metagenome167Y
F038276Metagenome166N
F040334Metagenome162Y
F042560Metagenome158Y
F042643Metagenome158Y
F045995Metagenome152N
F049927Metagenome146Y
F061920Metagenome / Metatranscriptome131Y
F065130Metagenome128N
F069480Metagenome124N
F080654Metagenome / Metatranscriptome115N
F082562Metagenome113N
F084703Metagenome / Metatranscriptome112Y
F087941Metagenome110Y
F089570Metagenome109N
F089571Metagenome109N
F094378Metagenome / Metatranscriptome106Y
F095627Metagenome105Y
F096028Metagenome105Y
F097497Metagenome / Metatranscriptome104Y
F105349Metagenome / Metatranscriptome100N
F105882Metagenome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
TuiMalila_1001048All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus9663Open in IMG/M
TuiMalila_1001577All Organisms → cellular organisms → Bacteria7815Open in IMG/M
TuiMalila_1003394All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique5131Open in IMG/M
TuiMalila_1004453Not Available4398Open in IMG/M
TuiMalila_1004719All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique4242Open in IMG/M
TuiMalila_1005200All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → unclassified Chromatiaceae → Chromatiaceae bacterium6732Open in IMG/M
TuiMalila_1005733All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium3754Open in IMG/M
TuiMalila_1005992All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria3658Open in IMG/M
TuiMalila_1007020Not Available3313Open in IMG/M
TuiMalila_1008523Not Available2925Open in IMG/M
TuiMalila_1008525All Organisms → cellular organisms → Bacteria → Proteobacteria2925Open in IMG/M
TuiMalila_1008770Not Available2872Open in IMG/M
TuiMalila_1008908All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium2845Open in IMG/M
TuiMalila_1009917All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique2655Open in IMG/M
TuiMalila_1010585Not Available2545Open in IMG/M
TuiMalila_1010997All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium2485Open in IMG/M
TuiMalila_1011172All Organisms → cellular organisms → Bacteria2457Open in IMG/M
TuiMalila_1012914Not Available2230Open in IMG/M
TuiMalila_1016250All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique1904Open in IMG/M
TuiMalila_1017934All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter1782Open in IMG/M
TuiMalila_1019714All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. IMCC90631667Open in IMG/M
TuiMalila_1020048All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1649Open in IMG/M
TuiMalila_1023789All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter1446Open in IMG/M
TuiMalila_1026451Not Available1328Open in IMG/M
TuiMalila_1026960All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter1855Open in IMG/M
TuiMalila_1028610Not Available1246Open in IMG/M
TuiMalila_1029075Not Available1229Open in IMG/M
TuiMalila_1032445Not Available1122Open in IMG/M
TuiMalila_1032599All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1118Open in IMG/M
TuiMalila_1033296Not Available1096Open in IMG/M
TuiMalila_1034720Not Available1056Open in IMG/M
TuiMalila_1035963All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1023Open in IMG/M
TuiMalila_1036073Not Available1020Open in IMG/M
TuiMalila_1036982Not Available1743Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
TuiMalila_1001048TuiMalila_100104812F038276MNLDFLLRLTNYVNICKQIYLAVIKQFLTVLVIINHACVLLHGNHNYKDVFYDRLSNQYIRNACDFHNLHISYNNLGLVLEKFLLYIKIINNKV*
TuiMalila_1001577TuiMalila_10015773F089571MLKKIIVIVFSVLFLVVPASSQHVQQKYAITDKDEKVILNDNGTWEYAEEDKQNYYYKKVPPKTYNYEFKSQTWEERLEQAAHEYWRIRAHAELEQLGIPVTRYDPTTSDVPLYLKLEGGRIRTDFDSFTPLAKGEVIDISGLWDPDKGDNPTLKIQGKLFLQITMKLDDQKKLFSQYNQRNYIPIPDDFQRILEFRDSLDVISLGMHDYNRDNTHIWPGIPHSFLYAPPGSYYDPNNPPIIHGDGFPYIQRGHLTLARREIPMTNSVYDNLLKRIDNLEGHGPIKIRYDMGKGIIETVTFEEVWLKINPYNGDPTHILKKVSLNKLE*
TuiMalila_1003394TuiMalila_10033941F094378DQFNWRRRSNHPGNSQAKGPYIITLERRLGLTEGVNLSGNKTEGVD*
TuiMalila_1004453TuiMalila_10044534F080654VVAEVISEETAESEPVGKTDLEERQNLWNKIQKFDPEASAMDYYDNNEWDLEKMRSDLKVLLEKEKFGR*
TuiMalila_1004719TuiMalila_10047191F037935STPIAKKTVLLLFIFEVGGYLKIFEIQHNKPLLYLYFTYEI*
TuiMalila_1005200TuiMalila_100520011F007828MLNGITNVVRSNQNAVMVRVGDSTSAVYTIFDLRTQSNTYTGSLNAVKKAWNRHYRNSRQFVTRSGSNHRYMGA*
TuiMalila_1005733TuiMalila_10057335F030294MTRRMVTPHPSITGMAAGFSLVDDLNAGDVVGKALGGNLSQALNGLSANAQGLIKTDAGRKSLVQAVGIAAIGAWARKALPATKIGGTKLYFRI*
TuiMalila_1005992TuiMalila_10059923F089570MQNHCFKFLFFFFCILFLNTKFPLSESERPSLDFNEKQKTIVSNALSNCGDYNFDDLLNTRKKELGISEPDKSINKKKQLDNSLGIEVSRSIETIYTPEQSLANVKKILSSINDDRLYPAVAYYIIKDFAFYEHGLCKSLRNHFQTYNIYKEFYFKTKNKELDPIYENENNLNFFYKNTSNARKRLLLAIQSKKRLLEKEQFLLKNLKIFTETYI*
TuiMalila_1007020TuiMalila_10070202F087941MPEHHEHDEESFPEQLKRLLIDNAFAFTIGWLVGRGYVIDLLSDIAGALT*
TuiMalila_1008523TuiMalila_10085232F105349MKTLVFQSKIGDGSLSWEDNRNMSQLKIDHLIIENCLSSVRSWCKRLGYEYKLVTQDLKWNFEFLSKNDVQLNCAFQNWEHLPKEGYDQIIYLDNDVFVFEYSGPPPMVDFGLVCRFGDQTQYAKHYCGNDSLWWNSGVIVMSQERCRHLSNWMLDYIPRARELSLFRDLPREESLITEYCAKYKPTKLAPIWNTMPPQTPIPMYSDAKFIHLLGTSKLNTLLKCPKEIQKVIMKNIDDSEKITA*
TuiMalila_1008525TuiMalila_10085257F097497MPKKPRKPTTPKQRDPSWQLRHALGYKVEPDKMCYTRKQKHPKPVEVTTKY*
TuiMalila_1008770TuiMalila_10087701F096028SHITISVDFRVDWASFELIDGDFHSHSFGERGDWNDSMLDEN*
TuiMalila_1008908TuiMalila_10089082F082562MNKLILSILITLSTVLFAQAKESSNNYFLNIELSLIHPILGGFGGTVGIEKNHFSYGLNSFGTKLNHMTKHYLLENAEELAVYNWGIELYSDYYFEQNHTGLFLGLILSLNGFRFNDIPNPQTILVLYSVPRIGYRIYLPKKLKSFYIQYSLTTHFKVWDNEKRFLYQEIDTKSIFLISQLTLGMKS*
TuiMalila_1009917TuiMalila_10099171F042560FFIFAPSVKLKKKGKVPIVSIVTKNNIKEFMKVAVMLVFHISSWQ*
TuiMalila_1010585TuiMalila_10105851F065130MSRTRRSAQELIEESEARLAKLREKAALDQAKQSPELAPIVEAIKENSEAITESQRGLGAGPQSFESRAAKHEAWLEEITAAEDLAELILAQAQERKDYLTSALAYMAQSVFEGKDISVDILETLASIPTSPVLEDAMIKY
TuiMalila_1010997TuiMalila_10109973F040334MPSNAPDLNFGPSERFLPGNKLAEGDVIKMNILDFEKEEVDTDYGSKFQFYLNILSSSTDVVSLGKYTWRTRARAPRKVHAYWVKQKTDVSEFSHWVWQLKVVEYGYSLKTLNSSSAQSKDIIKDGTHVPGHGAAGDGES*
TuiMalila_1011172TuiMalila_10111723F040334MSSETPKLNFGPSERYLPGKKLVEGDVLKINILDFESEEVDTDFGSKLEFHLNVLSSSTDVVSPGKYTWRTVAAAARKVHAYLSGEVSEHAATWVWQLTVVENGVSLKTLNSDPDPSEDTTKHGTPGPGNTTAGDGEA*
TuiMalila_1012914TuiMalila_10129141F011448MAYNIKDVFYLDTSVTIAAATAAGGVGQLDLSAYIDPIARGRTKGTGLGIYKVHWNVMRSGDDSDPIDDAEVGEFSFGLLAGFGSGDIATGGANMSDTAFSNTNNLLISSGQFYGPKSTVANASTPMNWFPNIMVEPSIEVPYVVVRDNVCLCYQIHTNMTSATHLSIRMEVAQLTLDQATLNQLLRTQTV*
TuiMalila_1016250TuiMalila_10162501F049927PTTDKAVGNVDKDFIEVICDPIIPLKKTVIILAVNPKT*
TuiMalila_1017934TuiMalila_10179341F037935STPIAKKTVLLLFIFEVGGYLKIFEIQHNKTLLYLYFTYEI*
TuiMalila_1019714TuiMalila_10197141F001756SFLILGLNIPKKKLCPKLEKNVKIKPNIITFKLKLLNIFFYDL*
TuiMalila_1019736TuiMalila_10197361F095627IENKPMDEEIIKNHKDNPAVTAAALNLGDDSSILNRINECYKTALC*
TuiMalila_1020048TuiMalila_10200481F026708KKPTKNRTELKVNGPILSIPVSWAMNVVPHIKEQASRQENDTVFFIEEDLYR*
TuiMalila_1023789TuiMalila_10237891F094378YGRDQFNWRRRSNHPGNSQAKGPYIITLESRLSLTEGVNLSGN*
TuiMalila_1026451TuiMalila_10264512F084703TFKFCDAVEVLPSSLPRELFSTTAPRFLPGKLEPLGLSLPGQLRVAS*
TuiMalila_1026960TuiMalila_10269603F032684MILLCTLRVLALIDKFKSNFSLFEVMFLPFGIITKNTLKNIIQPKITPTDKNANRDPKIFVKLNEITVPIMSSTTGKIILLFIYQFRLTDKIVN*
TuiMalila_1028610TuiMalila_10286102F105882MSLRNRVTWDGYNFNESLADSLESALLYLRASEMGLCDLGWDDEENDLTIRWTEEGERLMREAWENKNE*
TuiMalila_1029075TuiMalila_10290753F019844LFGFKDKKINKPKLTLVVNNTDNQEEKSENAYFSYYEEHFTFEEDISEEYRNELKIHLIESIENKVHPWDFEKNLDFKLKEPDQIYYLFMYCLMYIDIYEQDLFNKFTKLWYENNLDDTTKRDDEINNEALRLLKYDTLGFNLINGSKEEPIKELKEVVSDSFDEAMFNTKSDNLPLLLKAWKAYQEKVL*
TuiMalila_1032445TuiMalila_10324454F069480IELIDRIYILESRNNIKRVEGNAGQILDEASKNKPYNTVKTVFFSVFKPVVFL*
TuiMalila_1032599TuiMalila_10325993F096028HITISVDFRVDWASFELIDGDFHSHSFGVRVKRNDSMLEKN*
TuiMalila_1033296TuiMalila_10332961F061920STQTRSEKRATCERRRHVNYLNKNGRRFLDKTPFANFIKPEKSDKSCHYEKQESIRDGLTKRLIAEEASRKNAS*
TuiMalila_1034720TuiMalila_10347202F005783MPKRYLTVAADGGLSIIPEASGDDADGNKLTKTLFELSRTTDMSTHFDPAVHTREAIAAGIPGHRALALIGECEDSDLPSDRYFRNAWEWSD*
TuiMalila_1035963TuiMalila_10359632F042643MAFKLKTGKTINKVLAGAGVVALLGIVGNAVAPGFMSSTMGKAVEGIAAYSIGGVESVIGAAATMFIGPGSRGSTALDNTLTQTL*
TuiMalila_1036073TuiMalila_10360731F045995MWTNNIVTFYGADEDLKKVAERLYSPGVTSEEDNCFDFNKIIPIPKELYYIHFSRFNLNKKMIHGREYKQWYYVNFDGKMIEQNPDNYFEKSRLKGMSSRMKKQFMRKYGALNDSDWIAINWGTRSNSNSVSSDEFREKLVYNFRTNYGSARLIVLEIENMIYRDEFPKVKMMWEHNNVDVHICFMEDDEYVPDPTPVFTVGFAETEKSTAEYYKW*
TuiMalila_1036982TuiMalila_10369823F006552MRKCNKPIPTVWEATPNVEIPLLISPVLKIKSSRINPVANIPKPIPIAKKAIDNLNNVGLAVFLNPIYEIVPITRPTKSPTRLRIISKKNSNYADSVTVLNKV*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.