NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300001141

3300001141: Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M2



Overview

Basic Information
IMG/M Taxon OID3300001141 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0071004 | Gp0055310 | Ga0002911
Sample NameForest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M2
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size14173219
Sequencing Scaffolds23
Novel Protein Genes24
Associated Families23

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria3
Not Available4
All Organisms → cellular organisms → Bacteria6
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium3
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis1
All Organisms → cellular organisms → Bacteria → Acidobacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameForest Soil Microbial Communities From Multiple Locations In Canada And Usa
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)forest biome → land → forest soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationDavy Crockett National Forest, Groveton, Texas, USA
CoordinatesLat. (o)31.11Long. (o)-95.15Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001823Metagenome / Metatranscriptome630Y
F002851Metagenome / Metatranscriptome526Y
F005285Metagenome / Metatranscriptome406Y
F008323Metagenome / Metatranscriptome335Y
F010939Metagenome / Metatranscriptome297Y
F014301Metagenome / Metatranscriptome264N
F016431Metagenome / Metatranscriptome247Y
F016610Metagenome / Metatranscriptome246Y
F017390Metagenome / Metatranscriptome241N
F025548Metagenome / Metatranscriptome201Y
F025806Metagenome / Metatranscriptome200Y
F026495Metagenome / Metatranscriptome197Y
F029122Metagenome / Metatranscriptome189N
F031624Metagenome / Metatranscriptome182N
F035094Metagenome / Metatranscriptome173Y
F035938Metagenome / Metatranscriptome171Y
F041945Metagenome / Metatranscriptome159Y
F066400Metagenome / Metatranscriptome126Y
F070195Metagenome / Metatranscriptome123Y
F072803Metagenome / Metatranscriptome121Y
F075800Metagenome / Metatranscriptome118Y
F085788Metagenome / Metatranscriptome111N
F099818Metagenome / Metatranscriptome103Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI12638J13249_100038All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2540Open in IMG/M
JGI12638J13249_100097Not Available1966Open in IMG/M
JGI12638J13249_100098All Organisms → cellular organisms → Bacteria1962Open in IMG/M
JGI12638J13249_100427All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1368Open in IMG/M
JGI12638J13249_100556All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1240Open in IMG/M
JGI12638J13249_100644All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola1182Open in IMG/M
JGI12638J13249_100720Not Available1133Open in IMG/M
JGI12638J13249_100995All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium994Open in IMG/M
JGI12638J13249_101048Not Available969Open in IMG/M
JGI12638J13249_101081All Organisms → cellular organisms → Bacteria957Open in IMG/M
JGI12638J13249_101426Not Available844Open in IMG/M
JGI12638J13249_102092All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium709Open in IMG/M
JGI12638J13249_102143All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales700Open in IMG/M
JGI12638J13249_102757All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria626Open in IMG/M
JGI12638J13249_103213All Organisms → cellular organisms → Bacteria581Open in IMG/M
JGI12638J13249_103280All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium576Open in IMG/M
JGI12638J13249_103292All Organisms → cellular organisms → Bacteria575Open in IMG/M
JGI12638J13249_103519All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis559Open in IMG/M
JGI12638J13249_103599All Organisms → cellular organisms → Bacteria553Open in IMG/M
JGI12638J13249_103677All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium548Open in IMG/M
JGI12638J13249_103906All Organisms → cellular organisms → Bacteria534Open in IMG/M
JGI12638J13249_104281All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium513Open in IMG/M
JGI12638J13249_104534All Organisms → cellular organisms → Bacteria → Acidobacteria501Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI12638J13249_100038JGI12638J13249_1000381F070195MTFPRTLTVIVLNLSPADSDASTGTARPINRSNLQCRPFLPRRLTHLRRIDLDHRSRAQTSRFPLERSNQDPTSSANKPSPLSP*
JGI12638J13249_100097JGI12638J13249_1000971F025806TNRTKRRQSDGRAVTKVKRLSLVKYLTAGRQHRSGWEALVGAPQMARWPETAAGSVSTARSDREASRDLGDPLWSWSADKADRVCRTIGIIPEKGRCHSVKSDSLVVLRARESCAHGEAAKQMKTDSRETSPAPTEAGV*
JGI12638J13249_100098JGI12638J13249_1000981F026495VFGVAAASRNTRFQAARYGLTWVGLAPTDRASFAWRLPSLDHLVGG
JGI12638J13249_100427JGI12638J13249_1004271F029122MLIRPAIDDTDPIRHRRPTPDGQFSGNIIDEAMRP
JGI12638J13249_100556JGI12638J13249_1005561F085788VIAAIPASNDVNLPGLATTETLTRHVNLNYFSEAVSWEGEERLADADSWRITGNPQVIVRRSD*
JGI12638J13249_100644JGI12638J13249_1006441F072803MATAPKFRIDVDIHNLLMNTAQTPAKPVLVKGRKLPDPVFPRFP
JGI12638J13249_100720JGI12638J13249_1007201F025806AVTKVKRLSLVKYLTAGRQHRSGWEAPVGTPQKARWPETAAGSVSTARSDKEAPRDLGDPLWSWSAHEADRVCRTIRIIPEKGRRHGAKSDSLVVLRARESCVHGEAAKQMKTDSRETSPAPTEAGN*
JGI12638J13249_100995JGI12638J13249_1009951F031624SAMPRVQMPHLCAGWLVSAVGLALVLSSPANAERVHKKQGSYHSQRVAANANARRVKPQDSSAVYWGCCTKMGADPDPFIRSQILRDASGFFGGID*
JGI12638J13249_101048JGI12638J13249_1010481F041945EEMLEKIRQQQSEIEYLRRQREILKKAMSILGEEPHNGMR*
JGI12638J13249_101081JGI12638J13249_1010812F035094RLTENELSDFSRLWHDGCVKAIIEAQDVDRNHSPEV*
JGI12638J13249_101426JGI12638J13249_1014261F001823MREIDRDLIRGEHYGQRSCEPHKQAEHMAADQVCYVKILLANSEPSTHGTKQT
JGI12638J13249_102092JGI12638J13249_1020922F025548TVVDVKSPLQCAGLNRHEAEEEEALRERTSDPLGPEFCAGHREVHGEA*
JGI12638J13249_102143JGI12638J13249_1021432F002851MKSYIETAALITGCGSAAFWFASAMCRLRGINPGKDELDKVTELSNRLQRMSTWNFWAAGLMGVTALLSVWIRFLG*
JGI12638J13249_102757JGI12638J13249_1027573F099818MPVERRGQAIAIWLGSTGVGSNRHQEEPDVQWKAAAFVRWHEPDDARVSSP
JGI12638J13249_103213JGI12638J13249_1032131F016431MLMRVVAVMLLLTAGIAAEAMSYSFVSKASGRLGGPIRFEFYRDSTTRP
JGI12638J13249_103280JGI12638J13249_1032802F066400MLTGVRVFAGVLIRRAVAAQRDSTRLARPQVNPIAANLHAFFAFAPMRLLDRLNRNRIQVRTASGTHDRLA*
JGI12638J13249_103292JGI12638J13249_1032922F014301PQRRAAVQLTLALLELPAPPAMPGVRLDPEARAKAIEILARMIAQTLPTSTQPQNEVADE
JGI12638J13249_103519JGI12638J13249_1035191F008323PSIEGNWMTKTKGPNIHVADLPRRAVGEVVIIGTTPTTSTGMIVFALEDVHVGDNVELDDQQ*
JGI12638J13249_103599JGI12638J13249_1035992F035938NGPLPTTRESESEPSRDVKEMIEASARMERVTVGD*
JGI12638J13249_103677JGI12638J13249_1036772F010939MGYQALLFCPDEKTARIVTQVLNDLDFTVEPCTEPFAAVKKLMAQHFDAVVVDCDNEQNATLLFK
JGI12638J13249_103906JGI12638J13249_1039062F005285RMVGRWSDMNQGSRSGEERRSWLHGGPEEPCPEGDRASVVARKRGNTRGAKGGRKVEA*
JGI12638J13249_103914JGI12638J13249_1039141F017390MKAYAPLVCLIIWTAPCFAETKQSAPLSIQPEAKQSAPLSIQPGTTMLTLNKMCQENPNSRPYAVCMAYLRGLFDGMQQAKIVEDLKSTFCPPQSPDLEQIRLIIEQWVRDNPKNAGVSVGWAGPLALSLAFPCR*
JGI12638J13249_104281JGI12638J13249_1042811F016610MSTLDLTEQPARERARFAAPVPISISRDDTRDPADHRMLYVLGFGIAGAIVTNALVFIYFAVVYASG*
JGI12638J13249_104534JGI12638J13249_1045342F075800EVEVLKLAGVGTEAEVEVFESVGRRIDGGKRWDTGREVGIRSGAGRRGAERGEPCRVFELWRSGFMSQL*
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