| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300000362 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0063439 | Gp0054158 | Ga0026672 |
| Sample Name | Alkaline sediment microbial communities from Cock Soda Lake, Kulunda Steppe, Russia - 1KL_011_SED |
| Sequencing Status | Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 641318510 |
| Sequencing Scaffolds | 28 |
| Novel Protein Genes | 29 |
| Associated Families | 9 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 1 |
| All Organisms → cellular organisms → Bacteria | 8 |
| Not Available | 11 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Syntrophomonadaceae → Dethiobacter → Dethiobacter alkaliphilus | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Burkholderia cepacia complex → Burkholderia multivorans | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Luteolibacter → Luteolibacter marinus | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_19FT_COMBO_36_27 | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Iamiaceae → Aquihabitans → unclassified Aquihabitans → Aquihabitans sp. Kera 3 | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Alkaline Sediment Microbial Communities From Soda Lakes And Soda Solonchak Soils |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline → Sediment → Alkaline Sediment → Alkaline Sediment Microbial Communities From Soda Lakes And Soda Solonchak Soils |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | aquatic biome → lake → lake sediment |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Hypersaline (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Russia: Kulunda Steppe, Cock Lake | |||||||
| Coordinates | Lat. (o) | 52.06 | Long. (o) | 79.09 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000388 | Metagenome / Metatranscriptome | 1201 | Y |
| F037490 | Metagenome / Metatranscriptome | 168 | Y |
| F039953 | Metagenome / Metatranscriptome | 162 | Y |
| F045771 | Metagenome | 152 | Y |
| F046098 | Metagenome / Metatranscriptome | 152 | Y |
| F053662 | Metagenome / Metatranscriptome | 141 | Y |
| F076272 | Metagenome / Metatranscriptome | 118 | Y |
| F090013 | Metagenome / Metatranscriptome | 108 | Y |
| F098192 | Metagenome | 104 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| SL_1KL_011_SEDDRAFT_10000787 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 20892 | Open in IMG/M |
| SL_1KL_011_SEDDRAFT_10001185 | All Organisms → cellular organisms → Bacteria | 17151 | Open in IMG/M |
| SL_1KL_011_SEDDRAFT_10001648 | All Organisms → cellular organisms → Bacteria | 14718 | Open in IMG/M |
| SL_1KL_011_SEDDRAFT_10004095 | Not Available | 9198 | Open in IMG/M |
| SL_1KL_011_SEDDRAFT_10010899 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 5316 | Open in IMG/M |
| SL_1KL_011_SEDDRAFT_10013152 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 4745 | Open in IMG/M |
| SL_1KL_011_SEDDRAFT_10023271 | All Organisms → cellular organisms → Bacteria | 3323 | Open in IMG/M |
| SL_1KL_011_SEDDRAFT_10025836 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Syntrophomonadaceae → Dethiobacter → Dethiobacter alkaliphilus | 3106 | Open in IMG/M |
| SL_1KL_011_SEDDRAFT_10034265 | Not Available | 2576 | Open in IMG/M |
| SL_1KL_011_SEDDRAFT_10043407 | All Organisms → cellular organisms → Bacteria | 2191 | Open in IMG/M |
| SL_1KL_011_SEDDRAFT_10043487 | All Organisms → cellular organisms → Bacteria | 2188 | Open in IMG/M |
| SL_1KL_011_SEDDRAFT_10046032 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Burkholderia cepacia complex → Burkholderia multivorans | 2102 | Open in IMG/M |
| SL_1KL_011_SEDDRAFT_10048324 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 2033 | Open in IMG/M |
| SL_1KL_011_SEDDRAFT_10057100 | Not Available | 1806 | Open in IMG/M |
| SL_1KL_011_SEDDRAFT_10062593 | Not Available | 1673 | Open in IMG/M |
| SL_1KL_011_SEDDRAFT_10068471 | Not Available | 1554 | Open in IMG/M |
| SL_1KL_011_SEDDRAFT_10077748 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Luteolibacter → Luteolibacter marinus | 1396 | Open in IMG/M |
| SL_1KL_011_SEDDRAFT_10084455 | Not Available | 1304 | Open in IMG/M |
| SL_1KL_011_SEDDRAFT_10093210 | All Organisms → cellular organisms → Bacteria | 1198 | Open in IMG/M |
| SL_1KL_011_SEDDRAFT_10107903 | All Organisms → cellular organisms → Bacteria | 1055 | Open in IMG/M |
| SL_1KL_011_SEDDRAFT_10138157 | Not Available | 853 | Open in IMG/M |
| SL_1KL_011_SEDDRAFT_10156996 | Not Available | 766 | Open in IMG/M |
| SL_1KL_011_SEDDRAFT_10172922 | Not Available | 707 | Open in IMG/M |
| SL_1KL_011_SEDDRAFT_10179046 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_19FT_COMBO_36_27 | 688 | Open in IMG/M |
| SL_1KL_011_SEDDRAFT_10198105 | All Organisms → cellular organisms → Bacteria | 634 | Open in IMG/M |
| SL_1KL_011_SEDDRAFT_10217337 | Not Available | 589 | Open in IMG/M |
| SL_1KL_011_SEDDRAFT_10243416 | Not Available | 541 | Open in IMG/M |
| SL_1KL_011_SEDDRAFT_10256967 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Iamiaceae → Aquihabitans → unclassified Aquihabitans → Aquihabitans sp. Kera 3 | 519 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| SL_1KL_011_SEDDRAFT_10000787 | SL_1KL_011_SEDDRAFT_1000078720 | F098192 | MKCPLRIDSQGNASDCYKVECAWWVIDAEIEGLKATGACAILEIASNGIFVTLGDDEEEDYE* |
| SL_1KL_011_SEDDRAFT_10001185 | SL_1KL_011_SEDDRAFT_100011852 | F098192 | MRCPLRIDSEGNALDCYKDECAWWVTDAEIENSAVKGDCAVLEVAVNGIFVTIGDED* |
| SL_1KL_011_SEDDRAFT_10001648 | SL_1KL_011_SEDDRAFT_100016482 | F046098 | MRMILIIAAIILLAVGILGLFPQFGWANVPLWRAILEIVVGGLVLIAGIKTR* |
| SL_1KL_011_SEDDRAFT_10004095 | SL_1KL_011_SEDDRAFT_1000409514 | F098192 | MKCPLRIYSEGFDLECYREECAWWVADAEIEGSKSKGACAVLEIAVNGIFVTVGDDEEEDSE* |
| SL_1KL_011_SEDDRAFT_10010899 | SL_1KL_011_SEDDRAFT_100108994 | F098192 | MRCPLRIDSEGNALDCYKDECAWWVIDAEIEGSATEGACAVLEVAVNRIIIAIGNDEEEDYE* |
| SL_1KL_011_SEDDRAFT_10013152 | SL_1KL_011_SEDDRAFT_100131523 | F045771 | MTRRVFLDTEWTGPPWSSRSQPMWIGLADEGGRSWYGISSEANIDPSTNDFIAGVFRLITPDEPRLTHQELAAAIIAFCGDVDEFWAWRALSG* |
| SL_1KL_011_SEDDRAFT_10023271 | SL_1KL_011_SEDDRAFT_100232717 | F098192 | MRCPLRTDSQGNALDCYKDECAWWVMDAEIEGSKVTGACAVLEVAVNGIFVTIGDDEEEDYE* |
| SL_1KL_011_SEDDRAFT_10025836 | SL_1KL_011_SEDDRAFT_100258366 | F098192 | MKCPLRIDSQGNASDCYKDECAWWVIDAEIEGSKTKGACAVLEVAANGIFVTIGDDEEEDYE* |
| SL_1KL_011_SEDDRAFT_10034265 | SL_1KL_011_SEDDRAFT_100342653 | F098192 | LGVDAEGNALDCDKDEWAWWVMDAEIEGSETKGAFAILEVAVNEIFVTIGDDXEEGYN* |
| SL_1KL_011_SEDDRAFT_10043407 | SL_1KL_011_SEDDRAFT_100434074 | F098192 | MRCPLRIDSXGNASDCYKNECAWWVADAEIENSVTQGACAVLEVAVNGIFVTIGDDE* |
| SL_1KL_011_SEDDRAFT_10043487 | SL_1KL_011_SEDDRAFT_100434873 | F098192 | LLNRSLLNNRCPLRIDSEGNALDCYKDECAWWVSDAEIEGSETKGACAVLEIAVNGILVTIGDDG* |
| SL_1KL_011_SEDDRAFT_10046032 | SL_1KL_011_SEDDRAFT_100460322 | F098192 | MMKCPLRIDSQGNASDCYRDECAWWVADAEIEGSKSKGACAVLEVAVNGIFVTIEDDEEEDDR* |
| SL_1KL_011_SEDDRAFT_10048324 | SL_1KL_011_SEDDRAFT_100483241 | F098192 | MKCPLRIDSQGNASDCYRDECAWWVIDAEIEGSKTYGACAVLEIAANGIFVTIGDDEEEEY* |
| SL_1KL_011_SEDDRAFT_10057100 | SL_1KL_011_SEDDRAFT_100571002 | F098192 | MKCPLRTDSEGNFLSCYKDECAWWVIDSEISGTKDTGACAVLEVAVNGIILTVGDDEDYW |
| SL_1KL_011_SEDDRAFT_10062593 | SL_1KL_011_SEDDRAFT_100625932 | F098192 | MKCPLRTDAQGNASDCYRDECAWWVVDAEIEGSLTKGACAVLEVAVNGIFITIGDDE* |
| SL_1KL_011_SEDDRAFT_10068471 | SL_1KL_011_SEDDRAFT_100684713 | F000388 | MKVINVTKEYFETEDEKVYFFEPLEKEISVEDMQKIVDANEKLVRELKDNKHSKF* |
| SL_1KL_011_SEDDRAFT_10072363 | SL_1KL_011_SEDDRAFT_100723633 | F098192 | MKCPLRTDPEGNFLSCYKDECSWWVADAEIEGSKFTGACAILEVAVNGGGD* |
| SL_1KL_011_SEDDRAFT_10077748 | SL_1KL_011_SEDDRAFT_100777481 | F039953 | MLANPLKSRGRHRVNNMNSEADKEAEEWGNSMAEAYTGKSAGHRAERTRLKVDIAP* |
| SL_1KL_011_SEDDRAFT_10084455 | SL_1KL_011_SEDDRAFT_100844552 | F098192 | MRCPLRINSEGNALDCYKDECAWWVVDAEIIEGLATKGACAVLEVAVNGILVTIGDDDEEVENYV* |
| SL_1KL_011_SEDDRAFT_10093210 | SL_1KL_011_SEDDRAFT_100932103 | F000388 | MKVIKVTKEYYETEDEKVYFFEPLEKEISVEDMQKIVDANEKLIKELKDEHNKF* |
| SL_1KL_011_SEDDRAFT_10107903 | SL_1KL_011_SEDDRAFT_101079033 | F098192 | MKCPLRTDAEGNALSCYKNECAWWVVDAEIEGSMAKGACAVLEIASNGIFITIGEDDEEGYE* |
| SL_1KL_011_SEDDRAFT_10138157 | SL_1KL_011_SEDDRAFT_101381571 | F098192 | MKCPLRIDSEGNALNCYKDECAWWVIDSEISGSKDAGACAVLEVAVNGIVITVG* |
| SL_1KL_011_SEDDRAFT_10156996 | SL_1KL_011_SEDDRAFT_101569962 | F037490 | GSPDRLDALVWACTELALGSYQVPPMQLVYETAKGIR* |
| SL_1KL_011_SEDDRAFT_10172922 | SL_1KL_011_SEDDRAFT_101729222 | F098192 | MKCPLRIYSEGFDLECYKDECAWWVIDAEIEGSKTKGACAILEVAVNGIFVTIGDDEEEDFE* |
| SL_1KL_011_SEDDRAFT_10179046 | SL_1KL_011_SEDDRAFT_101790461 | F046098 | MRMILIIVAIILLAVGILGLFPQFGWANVPLWRAILEIVVGGLVLIVGIKKR* |
| SL_1KL_011_SEDDRAFT_10198105 | SL_1KL_011_SEDDRAFT_101981052 | F090013 | MMTETIEARGHTTREGVLNLSVNVGLADADVFVVIRVKPVISADAVDEHGWPLGFFDQVAGSMPDLQRAPQGQFEERLTLE* |
| SL_1KL_011_SEDDRAFT_10217337 | SL_1KL_011_SEDDRAFT_102173371 | F098192 | CPLRIDSQGNASDCYKDECAWWVIDAEIEGSKTIGACVVLEVAANGIFVTIGDDEED* |
| SL_1KL_011_SEDDRAFT_10243416 | SL_1KL_011_SEDDRAFT_102434161 | F053662 | MPITRKEFDDSIDTLSAKLLAFLESNPNQAFDIEELAEAIGGRKLEVWAILDALKQRGQVSGKCVKGTGYYCIAK* |
| SL_1KL_011_SEDDRAFT_10256967 | SL_1KL_011_SEDDRAFT_102569671 | F076272 | MMKFEQGIWLKCSDPDALVQLLAAWDLDQAATHVMGYIGTRLLADRDKPGSYLILAEFAEADGDLTAAEEAERNNQREETDQWAQKLRALADGELAWTHYDELYRTGVTGDLRTG* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |