NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 2236876001

2236876001: Marine microbial communities from Columbia River, CM, sample from CR-7km from mouth, GS312-0p1-CR7-chlmax



Overview

Basic Information
IMG/M Taxon OID2236876001 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0047387 | Gp0054169 | Ga0011254
Sample NameMarine microbial communities from Columbia River, CM, sample from CR-7km from mouth, GS312-0p1-CR7-chlmax
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of South Carolina
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size180615706
Sequencing Scaffolds53
Novel Protein Genes57
Associated Families57

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available36
All Organisms → Viruses → environmental samples → uncultured Mediterranean phage1
All Organisms → Viruses2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED2032
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.1
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED411
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU1571
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Pusillimonas (ex Stolz et al. 2005) → unclassified Pusillimonas → Pusillimonas sp. (ex Stolz et al. 2005)1
All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prasinovirus → unclassified Prasinovirus → Ostreococcus mediterraneus virus 11
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine And Estuarine Microbial Communities From Columbia River Coastal Margin
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Marine Estuarine → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomeestuarysea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationColumbia River Transect 7 km from mouth (CR7)
CoordinatesLat. (o)46.167Long. (o)-124.158Alt. (m)N/ADepth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002095Metagenome / Metatranscriptome594Y
F003976Metagenome / Metatranscriptome459Y
F004520Metagenome / Metatranscriptome434Y
F006661Metagenome / Metatranscriptome367Y
F007664Metagenome / Metatranscriptome347Y
F008037Metagenome340Y
F008425Metagenome / Metatranscriptome333Y
F009241Metagenome / Metatranscriptome321Y
F010233Metagenome / Metatranscriptome306Y
F013137Metagenome / Metatranscriptome274Y
F014506Metagenome / Metatranscriptome262Y
F014670Metagenome261Y
F018831Metagenome / Metatranscriptome233Y
F019682Metagenome / Metatranscriptome228Y
F021544Metagenome / Metatranscriptome218Y
F022079Metagenome216Y
F022199Metagenome / Metatranscriptome215Y
F023217Metagenome / Metatranscriptome211Y
F031061Metagenome / Metatranscriptome183N
F031561Metagenome182Y
F032625Metagenome / Metatranscriptome179Y
F033784Metagenome / Metatranscriptome176Y
F034931Metagenome173N
F035770Metagenome171Y
F035967Metagenome171Y
F037230Metagenome / Metatranscriptome168Y
F041215Metagenome / Metatranscriptome160N
F042172Metagenome158Y
F044326Metagenome / Metatranscriptome154Y
F048320Metagenome148N
F050750Metagenome145Y
F051973Metagenome143Y
F056521Metagenome / Metatranscriptome137N
F056919Metagenome / Metatranscriptome137N
F059445Metagenome134Y
F060039Metagenome / Metatranscriptome133Y
F060351Metagenome133N
F060785Metagenome132N
F060812Metagenome132N
F064227Metagenome129N
F065836Metagenome / Metatranscriptome127Y
F070124Metagenome / Metatranscriptome123N
F071133Metagenome / Metatranscriptome122N
F074906Metagenome / Metatranscriptome119N
F075783Metagenome / Metatranscriptome118N
F080080Metagenome / Metatranscriptome115Y
F084269Metagenome / Metatranscriptome112N
F085563Metagenome111N
F088748Metagenome109Y
F091848Metagenome / Metatranscriptome107Y
F091982Metagenome / Metatranscriptome107N
F094408Metagenome106N
F095321Metagenome105N
F095498Metagenome / Metatranscriptome105Y
F097309Metagenome104N
F098556Metagenome103N
F105496Metagenome / Metatranscriptome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
none_p032041Not Available507Open in IMG/M
none_p034748Not Available508Open in IMG/M
none_p057276Not Available525Open in IMG/M
none_p066043All Organisms → Viruses → environmental samples → uncultured Mediterranean phage501Open in IMG/M
none_p073200Not Available524Open in IMG/M
none_p074331Not Available533Open in IMG/M
none_p091800All Organisms → Viruses546Open in IMG/M
none_p093445All Organisms → Viruses527Open in IMG/M
none_p105067All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales515Open in IMG/M
none_p105470Not Available519Open in IMG/M
none_p106852Not Available511Open in IMG/M
none_p109513All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria510Open in IMG/M
none_p119531All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium531Open in IMG/M
none_p127948Not Available543Open in IMG/M
none_p130372Not Available536Open in IMG/M
none_p135156Not Available575Open in IMG/M
none_p143188Not Available509Open in IMG/M
none_p145708All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium506Open in IMG/M
none_p146909Not Available500Open in IMG/M
none_p147416Not Available506Open in IMG/M
none_p148435Not Available547Open in IMG/M
none_p151540All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203540Open in IMG/M
none_p154748Not Available532Open in IMG/M
none_p162635All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.519Open in IMG/M
none_p165093Not Available518Open in IMG/M
none_p171390Not Available514Open in IMG/M
none_p172320Not Available579Open in IMG/M
none_p195714Not Available500Open in IMG/M
none_p196275All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon536Open in IMG/M
none_p196404Not Available510Open in IMG/M
none_p201585Not Available503Open in IMG/M
none_p211080Not Available500Open in IMG/M
none_p225022Not Available505Open in IMG/M
none_p231297All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41521Open in IMG/M
none_p231798Not Available509Open in IMG/M
none_p275090Not Available508Open in IMG/M
none_p275561All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157531Open in IMG/M
none_p288902Not Available501Open in IMG/M
none_p295882All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203504Open in IMG/M
none_p300440Not Available507Open in IMG/M
none_p322928Not Available503Open in IMG/M
none_p331294Not Available501Open in IMG/M
none_p340448All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Pusillimonas (ex Stolz et al. 2005) → unclassified Pusillimonas → Pusillimonas sp. (ex Stolz et al. 2005)526Open in IMG/M
none_p348525Not Available514Open in IMG/M
none_p353151Not Available525Open in IMG/M
none_p365128Not Available501Open in IMG/M
none_p375198Not Available500Open in IMG/M
none_p400484All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium505Open in IMG/M
none_p416321All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prasinovirus → unclassified Prasinovirus → Ostreococcus mediterraneus virus 1549Open in IMG/M
none_p421258Not Available531Open in IMG/M
none_p425402Not Available509Open in IMG/M
none_p426411All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium545Open in IMG/M
none_p429882Not Available530Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
none_p032041none_0320412F075783PDAVRYTVEKECLTHYFNILTDGMPDWKGPIKALIPISLLNPMRAAVEYFTGTELMVLEQDGTDFKVFAKGYYMMGE
none_p034748none_0347482F059445MNLNELVDSLIELSCHEMPEEARKSLDDAIDHIVSNMNENQLKDVLGNTILDEVEAKHPKIVWKEEGDEEEIKAIKSLMEGNIAIA
none_p057276none_0572761F023217AIASKKKIDKALAAFGKSIGLDKPFFAAVTFDDKAGVFKICPCCGGDSIIKDFV
none_p066043none_0660432F013137MSNESVVNMVDSLTGGDNVAAQDAFKSALTDKIGQALDAKRQTVANDWLNAGDDMEAIEAGSELSGQSSLYAVAAQV
none_p073200none_0732001F085563MSKSTYPTKYQLEHLKKRINQEIDPLIDQAQLSVKSIVADLTESAELKLAKK
none_p074331none_0743312F034931MTNSGELIAINGVVIINDTAEKVLNADSYYVAEDTVIARIEVNGDIATDVLSSYITTPATAVKAGVLITPQRGDYFSAITLQAVXL
none_p091800none_0918001F022199MATKKTSMFTLTERLTISAATTETFATIDLGSYVDVGDRQAIQVHSVDFIFQGSAPTQSIFAAMGAPGVVRVQVTDLNRGRTCVLR
none_p093445none_0934452F088748NIHELRLEGTHAKIAMMSDLHWDNPKCDWKQLKQDLDYCLKESIPYYD
none_p105067none_1050671F033784NNMPRFKIHYTADIWETVIVEAENKKRTQELFETHDDKYFEAREDEPDQMGMENIKVDIVEELK
none_p105470none_1054701F035770MKPYKTITFGMAEFAYARHLRDELGHEGEIIYPNKDASKQDREGVWLLLTITGERLGTVSPDGTVRTT
none_p106852none_1068522F031561RIGFFINQPQRVEEGSINLRLPTSSDRDRTVTYSNLNVDLEPDARQINYDIVFNKTITESSNLSAQLTHVQNGDHSNGSKKSK
none_p109513none_1095131F042172LIVIKNIGSETKGASPEFILESVILKIDDNLETVFDFKSLKTDIRNNVNKIIDKLKGVKKDNSGKEKIDHKKNINNLKDLF
none_p119531none_1195312F019682MLISFRISRKLYFDTSSMCIYPQKWMEVMIKNFSISIEEDEVAKDWWDSLSVEDYDTVTCCI
none_p127948none_1279481F098556YVFNVTRDNLKKSYRHKEFAYHSDTKSDEEAISSVVDSNNTKDSMTIEECIKQVLIECGKDDPEGVELFTKVKSEGIAYRELTGIYGKTVSNLKKIVSEVNTMLKELIQPCLERAK
none_p130372none_1303721F097309MKYKIIKIGGRELKVPYASQSELKGEIAEFKAFKKSPVKYIKKQTLNNA
none_p135156none_1351561F105496LYLGQLQINPIILGGLGWEVKNSKVLESEIPQILQGWIIDLSD
none_p143188none_1431881F071133EKFDVLIQMEVLSGCEQACLGCFVDKNIDPAMNQQIIDRAKELADGVKRTGLNLREFVIGPTDFFTASNTESVLNNETVQQIMREHTGARIAAPAKFDVATMERVQEIFNILDDEDKISSRNDYRIYMPIGKIDQMLK*YYLLPRSNAKGKIFKENTPKQMDWSWTLQA
none_p145708none_1457082F064227MEKLQYVRGQIRSLEDLQQDLKDLLTTTEYEDDRVHGDTETD
none_p146909none_1469092F095321RFLKIKNWKIRIVANNKEMISPGEYKNIEILPKLFEMYRHYYKLNTKGKG
none_p147416none_1474161F010233EQLLEVFDGIEEQAEIKNNNAINELIFRIFIFFDKKN
none_p148435none_1484351F022079MKYENYVVITDDKGKRHAFYNFHELIKYIDSFKMSFLPDGFSYTI
none_p148540none_1485401F091982MSFRAFDLLKLVEDFGETLTLRKITTDGSYNPATGSVVGSATTDYSFTGYFYDYSSANPEEVIRGIRKCVVPYLGVGIDPFPDDLIIGNGDTVKVTRAVSIFSNGVAMCYICDVQE
none_p151540none_1515402F002095MAYIGANPVNGFFEKQDLTTDGSTTTFTLQTAVGSSSSILVSVGGVKYKNLKSH
none_p154748none_1547481F014506KKFMPIQLKADMLAQQALTLDYNTVLNVGASMSSIYGDVTYTSTLQIYDNLKQVGLSLGKSKVTLNDKYQVNWVDGVNVSYMRNYAMNATSVSLSRMKPMGKWGTVGVGVNYSYMFGKDALGQKMPNMASGGWNGLYTNMFMINKRIVYTPAFIVAASPISYTQKLPGC
none_p162635none_1626352F048320MKTLLATLLLILCYACGSIKGQAYIDINENIDYEANEDLRYRTRFKVGYKIYLGEKHTIKQK
none_p165093none_1650931F031061EVLSVLPNTIPIVDKDLMEEQILDKQYQLEYDGASHGGSQKLYEHFLEHRDLKWIWCHSGNRYGVNPKELYEQAPYRCPVFGTLLDYGLGKNTSTNHPAFRPSMDHIEQQSRGGVKRDDINNFEIMSVQANTYRNNATTMHQLYLLKYELTKL
none_p171123none_1711231F095498CVPLERELYKEKTNGKTVKIKISETVDAGYNNPGDDVANRTPAGELFFGVVGGNISTSSNTFPVTTTRVRPTGGSITAEGEGFILRQKGASKFLVSRLDASAIDPADAVVGSTVRVVAVGDTDWASMGAGKGTIAVGHIFSVEAASAAGSSGTVAECGICTLANEADSGLS
none_p171390none_1713902F014670MGDEKLYNDVHNYTKFKLVEMLINRLNDGRTKVDDMNSIEDLADEVLQTLAIAGLKFYSD
none_p171390none_1713903F051973MRIGIDCDGVLRDLITCITDTVKETHPQHADKILEPTSWIGSMVTF
none_p172320none_1723202F060785LGSILVQKSETVYGVSRSEDGFTTYIEGLYTRNVNFPDLELSIQGKDVLIGVKEPTGPAGKEWSPADLERIARDVIGKTATAAKDYIRDVERCKKQEASKALSLMEAAKIITFTKENIPKISLALEDNYSTEEPPF
none_p192353none_1923531F060351MTTKYNDMVWKILCGMPIEVFDEDDDTVWENETWELVKTRTEGDYKDSRAIGSANLITALNMVHQRLLVDGTKSEDITQLSHDIFNNILEKFTEDKLIRKDLENIRKPLQLV
none_p195714none_1957141F004520MKLTNKEKLKITWRVVDSLYEKLANELEYELQEHENFPETNDTYFDLFNEMTIKIVKYMRSELFQPMTNED
none_p196275none_1962751F021544MANFDLSKLMEGKNPQSVMLNETRQLKGKWEQTGLLEGLNEKSKAQCLFF
none_p196404none_1964042F018831MKIVASISIELDIDDTELLDEAKDRAIDTLIDRIDDWMNNNGIPPIISIDYRIPEIGDDDNIFLN
none_p201585none_2015852F091848MSNQTDILDNVLGIAEPEAMAVKDITPPKPVLVPETKLNDEDIDK
none_p211080none_2110801F003976YEKECILHTLDKLEMSVRFLSVWVNEPKGLINAKYVLEKNSNRTYNLLDENMVKDLLEEVNNES
none_p225022none_2250221F060812MTTIANMLGSVMTAVRLPRRKTGLMHINHNLETYVKTEFSKGDQAYVLDCMLRGDTLDRRNIV
none_p231297none_2312971F060039MNTNFGNIGIEYALGNNVLSLDYTKGKTDINTTDGSLIKGFSDIETESYRLAYEIHKDKHTTFGWSFSLPSHITSGSMDLEVAESVNLDGTLNYTNFNSDLTQTTKEKNLGFFYSKTPEHDLDATFNFSAEYRQDVSGQNGTDGVNLAMNYVKKFNGACG
none_p231798none_2317981F035967VKVGDLVKMKFGYSPVGVVTKVGYSVDHIVDVDPPQMATIVWTDDGKSNERVRDLKVVV
none_p275090none_2750901F094408EGGTGAGEIILENEHGVLQNPQSDSFSTRLNSWTNLRFTGTLNTSVDGETIRISDFNGTTSNANVKTNFAFPTEVTKSS
none_p275561none_2755611F008425MDKGNKVYMKKPKSWQKVWFWWESKKEKWFLNKAFDQRKDGRVEPEPSVWITAKQMESHIDHMSRMGYKYHIDE
none_p288902none_2889021F056919MKIKRVIQYAGAEILETQPGLFTALPNTPSFYGSRKFNSLEKAKFYLKQWQRK
none_p295882none_2958821F008037VSLCTKEVEKLDLVYKDACAKKQYSAAVNAIRLKSQLLGFLVEKKEVQHSTLDAMNDDDLTSYLDKIEKDHNIQ
none_p300440none_3004402F080080REPCYKRPRFMRPVGMIYGFKVGEPGSLQRRSGMAPVLSFDLDVDPLGGTEVFSWQM
none_p322928none_3229282F050750MCVKQDEDTPNEYRTEHFRSTMDDAYEYLKKIGYFKRGK
none_p331294none_3312942F084269MFRLKSKKQRKITLIVLRAINRINRYEMSENHLYRAYDSFGRQQGSHSLTS
none_p340448none_3404481F070124VNGKNQTNLEDLIKKMENLPVPERTCNIDDETCESCSG
none_p348525none_3485251F056521MSITAKVETPRSVVGSVSQGNQPQVTRVTVPGPKGDTGLAGSAQNQLSLASDVDTASFGLIDGSLLQYRTSTGKWTARNEL
none_p353151none_3531512F065836VAGYGLTEEAGKYQGVVYEYGKVAIVENEEKTEASLQFDFNVLDSNGLPKEMFDDEFYSVIGKVLEELIREQMNEEDLQYVNTDD
none_p365128none_3651282F009241MSRISKRKLIKALKGDFEVKMTKSEIFDMFKKSSNTRGMVKKATKNRVEDHTLPSSLDEYEAIENIGKKRRRRKKNS
none_p375198none_3751982F074906MITQFSEVCIGNSIVINGLAGVKVSTRTADFIVGEINGKSTWKKMYVKQKENVRIADPNGNEIVLTF
none_p400484none_4004842F006661NGACGWLMADGEFRPLMADAMQELKDAGFVDETTVTRTAVARDIHTTAFLKEYRTAQLNRSAEQIREERWEARAAMGPGVEMTNIITGETYTT
none_p416321none_4163211F044326FFGYTNNIEKGVTLILLKSHSTNYTKQAIAKGEYTVPEGVTFVESKDCEGTQWIKQQSCSLNGKPMDGTEGSCGPGKEIWILDSTHTDFKPATGDGKCEPEERDCSVECPKPCEGETWIEGACVRKEIANGAIVETVLDGTTGKCGDGITTFNLDTAAADYKPAVGSGACVTEKGGACNVPCP
none_p421258none_4212581F037230EEYVNIDWSGICSDFDLEHGDISPEQSFEIDRALGNINEVLHGFIEQNRPTVHIGTATITNIEHNVLMVALDHMYEHLDDLVGDLETFEEESTNLKRIDAVNSLKKTI
none_p425402none_4254021F041215MSDYERTVKVLEGPWSTKAFPNGEETTEGVISRKIITLYEKDGYLCEEEVTREYRGNDYF
none_p426411none_4264111F007664LAKPDSYISYAPFSTHYFRGDIARTHLASINYGWAELGFFMNSYREPTFALCYKTEILEKGRWRIHLMAGTAYGYKKNLYNYPTIPLSGTIFILKQIFVPVGGGTVEYFYFRKIGH
none_p429882none_4298822F032625MYYVLGESAETGEFEVWESLTAKEAMAVRNEYIKLGLQTRSGKMPDNQLIG

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