| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2228664014 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0050991 | Gp0052522 | Ga0011241 |
| Sample Name | Contaminated soil microbial communities from Tipperary, Ireland - enriched with phenanthrene, cDNA isolated at day 31 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | University of Liverpool |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 21141842 |
| Sequencing Scaffolds | 9 |
| Novel Protein Genes | 9 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 8 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Contaminated Soil Microbial Communities From Tipperary, Ireland, In A Timber Treatment Facility |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Contaminated Soil → Contaminated Soil Microbial Communities From Tipperary, Ireland, In A Timber Treatment Facility |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Ireland: Spaights timber treatment facility, Tipperary | |||||||
| Coordinates | Lat. (o) | 52.512199 | Long. (o) | -8.226278 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000344 | Metagenome / Metatranscriptome | 1257 | Y |
| F001633 | Metagenome / Metatranscriptome | 660 | Y |
| F024800 | Metagenome / Metatranscriptome | 204 | Y |
| F042356 | Metagenome / Metatranscriptome | 158 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| PheDRAFT_GXW9OCQ03F1K5X.42006 | Not Available | 530 | Open in IMG/M |
| PheDRAFT_GXW9OCQ03FZNN7.12884 | Not Available | 512 | Open in IMG/M |
| PheDRAFT_GXW9OCQ03G4BSS.67174 | Not Available | 528 | Open in IMG/M |
| PheDRAFT_GXW9OCQ03GBLGT.25308 | Not Available | 515 | Open in IMG/M |
| PheDRAFT_GXW9OCQ03GD2JJ.25024 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia | 510 | Open in IMG/M |
| PheDRAFT_GXW9OCQ03GDLC6.20596 | Not Available | 511 | Open in IMG/M |
| PheDRAFT_GXW9OCQ03GK57T.74984 | Not Available | 529 | Open in IMG/M |
| PheDRAFT_GXW9OCQ03GMZ3G.41429 | Not Available | 515 | Open in IMG/M |
| PheDRAFT_GXW9OCQ03HE39N.62062 | Not Available | 523 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| PheDRAFT_GXW9OCQ03F1K5X.42006 | PheDRAFT_00030040 | F042356 | FGY*SEAQLPRGYPVATVYQHGASDSGGFNQPFETAQ*KPPKGETKERTFRDGHEDSAGPVKTFRTPAMLKTTPLACEQKAT*ESRGETRGAG |
| PheDRAFT_GXW9OCQ03FZNN7.12884 | PheDRAFT_00071390 | F024800 | VARGQRTAKSGGRPRANGGDAETKSRACLRQVRRPVAQPPAQAGLEASLELQRARAAERPCYEAERTPLAVENSVGKPAANKQGAQCRPGKESVANSHTHFGPCLAARPGRG |
| PheDRAFT_GXW9OCQ03G4BSS.67174 | PheDRAFT_00034030 | F000344 | MRPRHPHAAESGVGKYTARESESAKACAIGKERVANA |
| PheDRAFT_GXW9OCQ03GBLGT.25308 | PheDRAFT_00063120 | F000344 | MRPRHPHAAESGVGKYTARESESAKACAIGKERVANAHY |
| PheDRAFT_GXW9OCQ03GD2JJ.25024 | PheDRAFT_00076490 | F001633 | VRHALFPGGTRLDALAFAGDVLPDATLRGMRMYQSHGGTVLTVTGRDLSSEASAPGSDTPCREWRAGRGADTPATFISRVAHLYREDGINLWLIVGLALRV |
| PheDRAFT_GXW9OCQ03GDLC6.20596 | PheDRAFT_00075940 | F024800 | VARGQRTAKSGGCPRANGGDAETKSRACLHQVRRPVAQPSAQAGQEASLEIQRARAAGRPCYEAERTPLAVENSVGKPAADPTQGAQCRPGKESVASSHPHFGPCPAARPGR |
| PheDRAFT_GXW9OCQ03GK57T.74984 | PheDRAFT_00031930 | F042356 | VHQHGTSDSGGGNQPFATAQENRLKGGQTERSNRGEHAGVAGLVKIFRVPAMLKTTPLVCEQNAT |
| PheDRAFT_GXW9OCQ03GMZ3G.41429 | PheDRAFT_00064810 | F042356 | GVSGLSESQLPRGYKVATVHQHGTGDSGGGNQPFATARRKPPKGGQTERTNRGEHAGAAGRVKIFRVPAMLKTTPLV |
| PheDRAFT_GXW9OCQ03HE39N.62062 | PheDRAFT_00045720 | F000344 | MRPRHPHAAESGVGKYTARESESAKACAIGKERVANAHS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |