Sample 2225789001

Overview

Basic Information
IMG/M Taxon OID	2225789001 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0060788 \| Gp0052463 \| Ga0011232
Sample Name	Saline water microbial communities from Qinghai Lake, Tibetan Plateau -Sample 11638
Sequencing Status	Permanent Draft
Sequencing Center	University of Illinois, Urbana-Champaign
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	350082716
Sequencing Scaffolds	19
Novel Protein Genes	20
Associated Families	20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium TMED194	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	4
Not Available	10
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Saline Water Microbial Communities From A Tibetan Plateau Lake
Type	Environmental
Taxonomy	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Water Microbial Communities From A Tibetan Plateau Lake

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → lake → saline water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Hypersaline (saline)

Location Information
Location	Qinghai Lake, Tibetan Plateau
Coordinates	Lat. (^o)	36.381	Long. (^o)	100.218	Alt. (m)	N/A	Depth (m)	1
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F005981	Metagenome / Metatranscriptome	384	Y
F007549	Metagenome	349	Y
F014228	Metagenome	264	N
F020114	Metagenome / Metatranscriptome	226	Y
F023586	Metagenome / Metatranscriptome	209	Y
F031499	Metagenome / Metatranscriptome	182	Y
F039987	Metagenome / Metatranscriptome	162	N
F049240	Metagenome / Metatranscriptome	147	Y
F065363	Metagenome	127	N
F066593	Metagenome	126	N
F067691	Metagenome	125	Y
F074468	Metagenome / Metatranscriptome	119	Y
F076122	Metagenome / Metatranscriptome	118	Y
F080034	Metagenome / Metatranscriptome	115	N
F080982	Metagenome / Metatranscriptome	114	Y
F085583	Metagenome	111	N
F088894	Metagenome / Metatranscriptome	109	Y
F093771	Metagenome / Metatranscriptome	106	Y
F093836	Metagenome	106	N
F102569	Metagenome / Metatranscriptome	101	N

Family

Category

Number of Sequences

3D Structure?

F005981

Metagenome / Metatranscriptome

384

F007549

Metagenome

349

F014228

Metagenome

264

F020114

Metagenome / Metatranscriptome

226

F023586

Metagenome / Metatranscriptome

209

F031499

Metagenome / Metatranscriptome

182

F039987

Metagenome / Metatranscriptome

162

F049240

Metagenome / Metatranscriptome

147

F065363

Metagenome

127

F066593

Metagenome

126

F067691

Metagenome

125

F074468

Metagenome / Metatranscriptome

119

F076122

Metagenome / Metatranscriptome

118

F080034

Metagenome / Metatranscriptome

115

F080982

Metagenome / Metatranscriptome

114

F085583

Metagenome

111

F088894

Metagenome / Metatranscriptome

109

F093771

Metagenome / Metatranscriptome

106

F093836

Metagenome

106

F102569

Metagenome / Metatranscriptome

101

Scaffold	Taxonomy	Length	IMG/M Link
2226150600	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium TMED194	522	Open in IMG/M
2226187249	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi	520	Open in IMG/M
2226226686	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	518	Open in IMG/M
2226231951	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01	518	Open in IMG/M
2226233645	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	518	Open in IMG/M
2226407811	Not Available	510	Open in IMG/M
2226431130	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	509	Open in IMG/M
2226434196	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	509	Open in IMG/M
2226460015	Not Available	508	Open in IMG/M
2226461147	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	508	Open in IMG/M
2226571108	Not Available	505	Open in IMG/M
2226579734	Not Available	504	Open in IMG/M
2226624430	Not Available	545	Open in IMG/M
2226649462	Not Available	502	Open in IMG/M
2226659701	Not Available	502	Open in IMG/M
2226792160	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	539	Open in IMG/M
2226876598	Not Available	530	Open in IMG/M
2226925192	Not Available	526	Open in IMG/M
2226944624	Not Available	525	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

2226150600

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium TMED194

522

Open in IMG/M

2226187249

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi

520

Open in IMG/M

2226226686

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

518

Open in IMG/M

2226231951

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01

518

Open in IMG/M

2226233645

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

518

Open in IMG/M

2226407811

Not Available

510

Open in IMG/M

2226431130

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

509

Open in IMG/M

2226434196

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

509

Open in IMG/M

2226460015

Not Available

508

Open in IMG/M

2226461147

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria

508

Open in IMG/M

2226571108

Not Available

505

Open in IMG/M

2226579734

Not Available

504

Open in IMG/M

2226624430

Not Available

545

Open in IMG/M

2226649462

Not Available

502

Open in IMG/M

2226659701

Not Available

502

Open in IMG/M

2226792160

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

539

Open in IMG/M

2226876598

Not Available

530

Open in IMG/M

2226925192

Not Available

526

Open in IMG/M

2226944624

Not Available

525

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
2226150600	2226245197	F074468	MAAVDEIILAPESFRTIYLRREDRVILRTENGRKNY
2226187249	2226298422	F066593	MKIEVNYIFREEGVDPIYERIGIEIDSEVEIQEAGVLNLNHVVGASAFYELTQVYVSGGHVFYIDLPFNDLKTMDVVXKP
2226226686	2226355445	F080982	MMSPRIYIYKITFEEISYYYYGVHKEKRYNEYYMGTPVTHKWVWDFYTPVKQILEVFECNDDGWLEAQEVEKRIIKEFYNSDKWCLNENVGG
2226231951	2226362985	F020114	LETKNDYETTKNSKHISRCVDTHGVHHLDALDDYGRHWYATMEQKEEPWLTYTQQWHL
2226233645	2226365386	F080034	MEEIKAPKKERKFLRAMGDIALALFRELVLGIGKKVINKVGKKRQGLVIAFALIASISYAAIDSIPYPVTGNKQRLGFQTTGNGLVTVGDLKIQLQSHQ
2226407811	2226611418	F065363	EPVTIAAAIATAKVVAAGVGALSTVLRNVQGTAARNRITQLYNNNEYNVQNLNRLNARQVADQITRIDNAITLTPRTSFGQKMALSRFRLVYQQRFDQVSGGGGIGNLPGWVLPAALGLGAFLIFRGRK*TRYY
2226431130	2226643854	F023586	LSSFTAPVKVDKNNGTLFYEQSLSMILASDTKELRAEIHLLAQNEVVCLVENADGTIVALGLGEGLQVADANEYTSGVLKGDRKGHVIVMNGMENDPIPDVDPDVYTNLLIQQSPVINFS
2226434196	2226648078	F067691	TPHRSNNQPIDRGNMRIKLIVTCKPGDQPVEVITNLLCIAEWERIENRKLSDGKGVGASDLVAWAYNMFKQSGRLMPEATWREWLTKNPDMDIDTVDLTNPNPTEAAATAEN
2226460015	2226683691	F102569	MG*YLYGFDFTKKYVESSLGLNYSERRGPVLFWVKALLTQTYNWNHWYDPAGTSSPMRANGYNFLSFNVFTGATFLL
2226461147	2226685265	F093836	LDTSEQTRTRGTVVQDELRNWAWWLAGYVGPPVQDKAASAEGNYVSDEIWDGHEPKYEPDQLSGERVEEIVRNLPSFSRIVLKAAYVQYPYHLEHSIAQRLKIS
2226546967	2226801881	F088894	MTSKEFVLWLQGFTQGVHEYSISPKQWDALKDKLAEVNDEPTDVPIGEGGFGVPNTQPFPRW
2226571108	2226834025	F093771	IVTKNPLTSVVTSWSLTGTGLLLSYVHQAFGLAVLVASLGYTLWKWRRDWIKEKSK
2226579734	2226845493	F031499	MANIPINFGGILLTAGQSATGSFAGITSLGTGSAASPTGSVISAFKYGTAIGPNQAIIEAPGVSFTISAGSTIPLFITSCSLAAGSAPVIYIHNIIINGKHYNN
2226624430	2226904256	F007549	MFLSQSYYNTPKLIRHNINYLVVLKLGGTRDVNSILRECSIGLTKDELLFMYNEATRNKFDVFIINCEKSGNERYRMNFLQYF
2226649462	2226936636	F039987	LRGRGEFPKPP*TSGKNWDAPVSDIEAATKWRDDYLAANNSQHAPATLNDARLQKLVLESERLRIRLSHDKGELVEIAKVKESGIRVGAIFSAKLAALVNDASGALAGLGESELRKKLHERTQGILAEIRDELEK
2226659701	2226949611	F005981	MANVDKAFGLRAIGNLSATGAQKQFGYEIATNQAGAIFQGDLVTLFDGFVLKFDPDAHTAALGVFNG
2226792160	2227048345	F085583	MAGELFINNSLVDIDQSIPFPLTFNISDIKDLSARKGNKSKTITLPGTRVNHQLMTSVFLLTATEKISTTTSGIVNFDPSIKANCQYYQNGLLQFNGIAQLMECKLNNGIWSFEITMVSDTIDYISQLKKV
2226876598	2227174841	F049240	MNFKTFNRHELFDGFLVDFHSTTIKLVSNYIWETNGEVMSDLENMLCGIWDGFLYDDLLTKALILPKEDFRRIEDTVKIINEHIEMNGESVTQIF
2226925192	2227246483	F014228	MWILPMTATLAVLNSCASVKPVLQSVVVRDTVIVTKTKYLTDTLELYKDTTIYQDKVRLQLQYIDRKVFVEATCLPDTIRVTQTKILTKERKQRGWTLEGGLTMLGLVLVAAYFVKRWIDKIME
2226944624	2227275119	F076122	VGVLLTVSVVGYIVGVWQKHEVVNEILEYLDVKRTQLSNMMSSCAMYSNDYNELDAMYEVYDHLITKLEDDFR

Scaffold ID

Protein ID

Family

Sequence

2226150600

2226245197

F074468

MAAVDEIILAPESFRTIYLRREDRVILRTENGRKNY

2226187249

2226298422

F066593

MKIEVNYIFREEGVDPIYERIGIEIDSEVEIQEAGVLNLNHVVGASAFYELTQVYVSGGHVFYIDLPFNDLKTMDVVXKP

2226226686

2226355445

F080982

MMSPRIYIYKITFEEISYYYYGVHKEKRYNEYYMGTPVTHKWVWDFYTPVKQILEVFECNDDGWLEAQEVEKRIIKEFYNSDKWCLNENVGG

2226231951

2226362985

F020114

LETKNDYETTKNSKHISRCVDTHGVHHLDALDDYGRHWYATMEQKEEPWLTYTQQWHL

2226233645

2226365386

F080034

MEEIKAPKKERKFLRAMGDIALALFRELVLGIGKKVINKVGKKRQGLVIAFALIASISYAAIDSIPYPVTGNKQRLGFQTTGNGLVTVGDLKIQLQSHQ

2226407811

2226611418

F065363

EPVTIAAAIATAKVVAAGVGALSTVLRNVQGTAARNRITQLYNNNEYNVQNLNRLNARQVADQITRIDNAITLTPRTSFGQKMALSRFRLVYQQRFDQVSGGGGIGNLPGWVLPAALGLGAFLIFRGRK*TRYY

2226431130

2226643854

F023586

LSSFTAPVKVDKNNGTLFYEQSLSMILASDTKELRAEIHLLAQNEVVCLVENADGTIVALGLGEGLQVADANEYTSGVLKGDRKGHVIVMNGMENDPIPDVDPDVYTNLLIQQSPVINFS

2226434196

2226648078

F067691

TPHRSNNQPIDRGNMRIKLIVTCKPGDQPVEVITNLLCIAEWERIENRKLSDGKGVGASDLVAWAYNMFKQSGRLMPEATWREWLTKNPDMDIDTVDLTNPNPTEAAATAEN

2226460015

2226683691

F102569

MG*YLYGFDFTKKYVESSLGLNYSERRGPVLFWVKALLTQTYNWNHWYDPAGTSSPMRANGYNFLSFNVFTGATFLL

2226461147

2226685265

F093836

LDTSEQTRTRGTVVQDELRNWAWWLAGYVGPPVQDKAASAEGNYVSDEIWDGHEPKYEPDQLSGERVEEIVRNLPSFSRIVLKAAYVQYPYHLEHSIAQRLKIS

2226546967

2226801881

F088894

MTSKEFVLWLQGFTQGVHEYSISPKQWDALKDKLAEVNDEPTDVPIGEGGFGVPNTQPFPRW

2226571108

2226834025

F093771

IVTKNPLTSVVTSWSLTGTGLLLSYVHQAFGLAVLVASLGYTLWKWRRDWIKEKSK

2226579734

2226845493

F031499

MANIPINFGGILLTAGQSATGSFAGITSLGTGSAASPTGSVISAFKYGTAIGPNQAIIEAPGVSFTISAGSTIPLFITSCSLAAGSAPVIYIHNIIINGKHYNN

2226624430

2226904256

F007549

MFLSQSYYNTPKLIRHNINYLVVLKLGGTRDVNSILRECSIGLTKDELLFMYNEATRNKFDVFIINCEKSGNERYRMNFLQYF

2226649462

2226936636

F039987

LRGRGEFPKPP*TSGKNWDAPVSDIEAATKWRDDYLAANNSQHAPATLNDARLQKLVLESERLRIRLSHDKGELVEIAKVKESGIRVGAIFSAKLAALVNDASGALAGLGESELRKKLHERTQGILAEIRDELEK

2226659701

2226949611

F005981

MANVDKAFGLRAIGNLSATGAQKQFGYEIATNQAGAIFQGDLVTLFDGFVLKFDPDAHTAALGVFNG

2226792160

2227048345

F085583

MAGELFINNSLVDIDQSIPFPLTFNISDIKDLSARKGNKSKTITLPGTRVNHQLMTSVFLLTATEKISTTTSGIVNFDPSIKANCQYYQNGLLQFNGIAQLMECKLNNGIWSFEITMVSDTIDYISQLKKV

2226876598

2227174841

F049240

MNFKTFNRHELFDGFLVDFHSTTIKLVSNYIWETNGEVMSDLENMLCGIWDGFLYDDLLTKALILPKEDFRRIEDTVKIINEHIEMNGESVTQIF

2226925192

2227246483

F014228

MWILPMTATLAVLNSCASVKPVLQSVVVRDTVIVTKTKYLTDTLELYKDTTIYQDKVRLQLQYIDRKVFVEATCLPDTIRVTQTKILTKERKQRGWTLEGGLTMLGLVLVAAYFVKRWIDKIME

2226944624

2227275119

F076122

VGVLLTVSVVGYIVGVWQKHEVVNEILEYLDVKRTQLSNMMSSCAMYSNDYNELDAMYEVYDHLITKLEDDFR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

2225789001: Saline water microbial communities from Qinghai Lake, Tibetan Plateau -Sample 11638

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences