| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2166559021 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0060830 | Gp0051531 | Ga0026531 |
| Sample Name | Fresh water microbial communities from LaBonte Lake, Laramie, Wyoming, sample from peak-bloom 2 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 170450482 |
| Sequencing Scaffolds | 37 |
| Novel Protein Genes | 41 |
| Associated Families | 36 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 12 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 13 |
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica | 1 |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → Viruses → Predicted Viral | 6 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin234 | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 1 |
| All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Freshwater Microbial Communities From Labonte Lake, Laramie, Wyoming, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Labonte Lake, Laramie, Wyoming, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | freshwater lake biome → freshwater algal bloom → lake water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | LaBonte Lake, Laramie, Wyoming | |||||||
| Coordinates | Lat. (o) | 41.321 | Long. (o) | -105.586 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002098 | Metagenome / Metatranscriptome | 593 | Y |
| F003268 | Metagenome / Metatranscriptome | 496 | Y |
| F003329 | Metagenome / Metatranscriptome | 493 | Y |
| F004345 | Metagenome / Metatranscriptome | 442 | Y |
| F005529 | Metagenome / Metatranscriptome | 397 | Y |
| F009825 | Metagenome | 312 | Y |
| F029288 | Metagenome / Metatranscriptome | 189 | Y |
| F029443 | Metagenome / Metatranscriptome | 188 | Y |
| F030017 | Metagenome | 186 | Y |
| F030442 | Metagenome / Metatranscriptome | 185 | Y |
| F030940 | Metagenome | 184 | Y |
| F032333 | Metagenome / Metatranscriptome | 180 | Y |
| F033403 | Metagenome / Metatranscriptome | 177 | N |
| F034898 | Metagenome / Metatranscriptome | 173 | Y |
| F036704 | Metagenome | 169 | Y |
| F040599 | Metagenome / Metatranscriptome | 161 | Y |
| F042328 | Metagenome | 158 | Y |
| F049637 | Metagenome / Metatranscriptome | 146 | N |
| F053130 | Metagenome | 141 | N |
| F053903 | Metagenome | 140 | N |
| F055533 | Metagenome | 138 | Y |
| F057131 | Metagenome / Metatranscriptome | 136 | Y |
| F057778 | Metagenome | 136 | Y |
| F057919 | Metagenome / Metatranscriptome | 135 | Y |
| F061852 | Metagenome / Metatranscriptome | 131 | Y |
| F062566 | Metagenome / Metatranscriptome | 130 | Y |
| F063629 | Metagenome | 129 | N |
| F065715 | Metagenome / Metatranscriptome | 127 | Y |
| F065775 | Metagenome | 127 | Y |
| F067655 | Metagenome | 125 | Y |
| F069853 | Metagenome / Metatranscriptome | 123 | Y |
| F074591 | Metagenome / Metatranscriptome | 119 | Y |
| F086796 | Metagenome | 110 | Y |
| F090069 | Metagenome / Metatranscriptome | 108 | Y |
| F091069 | Metagenome / Metatranscriptome | 108 | Y |
| F091646 | Metagenome | 107 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| GXP7IEG01A5FGV | Not Available | 518 | Open in IMG/M |
| GXP7IEG01A9R27 | Not Available | 510 | Open in IMG/M |
| GXP7IEG01ADU43 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 519 | Open in IMG/M |
| GXP7IEG01BG562 | Not Available | 505 | Open in IMG/M |
| GXP7IEG01BGP80 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica | 516 | Open in IMG/M |
| GXP7IEG01BRLZP | Not Available | 509 | Open in IMG/M |
| GXP7IEG01BYZC6 | Not Available | 512 | Open in IMG/M |
| GXP7IEG01CNM4M | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 517 | Open in IMG/M |
| GXP7IEG01CPELI | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 519 | Open in IMG/M |
| GXP7IEG01DE955 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 522 | Open in IMG/M |
| GXP7IEG01DLDJ8 | All Organisms → cellular organisms → Bacteria | 515 | Open in IMG/M |
| GXP7IEG01DTAFF | Not Available | 511 | Open in IMG/M |
| GXP7IEG01DXU2C | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 516 | Open in IMG/M |
| GXP7IEG01ETSX6 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 507 | Open in IMG/M |
| LBLPB2_contig00014 | All Organisms → Viruses → Predicted Viral | 3244 | Open in IMG/M |
| LBLPB2_contig00015 | All Organisms → Viruses → Predicted Viral | 3106 | Open in IMG/M |
| LBLPB2_contig00035 | All Organisms → Viruses → Predicted Viral | 1906 | Open in IMG/M |
| LBLPB2_contig00040 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1864 | Open in IMG/M |
| LBLPB2_contig00048 | All Organisms → Viruses → Predicted Viral | 1763 | Open in IMG/M |
| LBLPB2_contig00061 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1615 | Open in IMG/M |
| LBLPB2_contig00070 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin234 | 1566 | Open in IMG/M |
| LBLPB2_contig00114 | All Organisms → Viruses → Predicted Viral | 1347 | Open in IMG/M |
| LBLPB2_contig00155 | Not Available | 1201 | Open in IMG/M |
| LBLPB2_contig00200 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1091 | Open in IMG/M |
| LBLPB2_contig00206 | All Organisms → Viruses → Predicted Viral | 1078 | Open in IMG/M |
| LBLPB2_contig00311 | Not Available | 933 | Open in IMG/M |
| LBLPB2_contig00326 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 916 | Open in IMG/M |
| LBLPB2_contig00379 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 869 | Open in IMG/M |
| LBLPB2_contig00382 | Not Available | 867 | Open in IMG/M |
| LBLPB2_contig00419 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 837 | Open in IMG/M |
| LBLPB2_contig00451 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 817 | Open in IMG/M |
| LBLPB2_contig00640 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 729 | Open in IMG/M |
| LBLPB2_contig00682 | Not Available | 711 | Open in IMG/M |
| LBLPB2_contig00813 | Not Available | 663 | Open in IMG/M |
| LBLPB2_contig01587 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 525 | Open in IMG/M |
| LBLPB2_contig01640 | Not Available | 521 | Open in IMG/M |
| LBLPB2_contig01795 | All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage | 506 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| GXP7IEG01A1IB0 | LBLPB2_01973860 | F091069 | MYLENFAGMLWFHTDVHKWSSKVKTKYLEDLNLLQHLVNIPIIALVEEDNKKLAKFGEVTGWKVIDQMNLNNGKVGLVYTRSL |
| GXP7IEG01A5FGV | LBLPB2_00984310 | F040599 | MAKGTIYEHREPTETELAWITGIWEGEGSWSYKKGRTRTFANGKTYTEKDYLSMSMSMTDQDIMERVATIMDGRKITYTDGGPVHKAAGQKPTYCINLQGEAATRWTELMKPYLGKSRREKYDM |
| GXP7IEG01A9R27 | LBLPB2_00289210 | F057919 | MFLSTTHNPYLGFYFLIIANQLLSGVMLSFSLIPESMIIPLVRDEEDLEDLYTDDFF |
| GXP7IEG01ADU43 | LBLPB2_01839950 | F086796 | MSDYSENYLKIQRLLKQYHNATIKWEYEKATKIAHELADETIKLEIASIRALKDKWLNN |
| GXP7IEG01AI5W4 | LBLPB2_02333520 | F090069 | TSELAIMTGKLGKTVQEIHTMLAEIKESTTNISVKFDGGGF |
| GXP7IEG01BG562 | LBLPB2_03823960 | F063629 | MTAFEKLMAEFGSIKNLCKAIEVKYVTAYAWKMRNGIPAKWHKKIIEASEGRLTEQDLG |
| GXP7IEG01BGP80 | LBLPB2_03875830 | F067655 | MFLNVPLIADWQSIARLREHHVNENLRRANRKRYQFDYAPGQQVLKKVHDPTKLGVRTDGPYTIERVHVNGNLTIILRPGVTEHINIRRVLPYR |
| GXP7IEG01BRLZP | LBLPB2_00900410 | F033403 | MTEIEKFLNEQFTQVITEDKMGIKCLYKHKEGLIDDGVVFFEFAKKKWSKKPIMNKRQFVIVDADMSDVLQFLNQYYNLSEQDYSNIRHYIINTSIKKVEEFFGGISLWFQVLVSDE |
| GXP7IEG01BYZC6 | LBLPB2_01815960 | F032333 | MAQYRYYEKVVFVMFDLESKILALMDNFGLALLMEQNDVSEYVVLQFLIDNGYIDLDDYFNLDAELEEWKRTEE |
| GXP7IEG01CNM4M | LBLPB2_02566360 | F003329 | MAYSGTVGTTVISVQNLIDDSARACGKLSEELTVEQVVSAKRNLFYLLSSLINKGIQYWAINETVIGLKADQYTYELPLGAVDTLNVLYRTMDRPSGNYATSAGGTVFNAFDGEIDTFCQQTSANGNIS |
| GXP7IEG01CPELI | LBLPB2_03444530 | F062566 | MAYSGTIGETVINVQTLIDHGARRCGKLAEELTSEQQLSARQ |
| GXP7IEG01DE955 | LBLPB2_00828110 | F065715 | MYKAQFKRNSPYESWTTIGHYGSEQAAMAAAISYKNKGMIMARVIDKNGAVVYSG |
| GXP7IEG01DLDJ8 | LBLPB2_01317110 | F009825 | MTPRLLADENTSHRLIAACRQLDSGFPLVHVANWENGAFLSAKDPMLLMTLREHGMILVGFDRASMPFHATTLTRQGLGHAGIILFQRVVPLVAYGQQARLLVDFWADAQDWEWADRIQYLPQVT |
| GXP7IEG01DTAFF | LBLPB2_02343040 | F003268 | MSANNLPTHLPSVEKLIQRVASAEKSQQKDIRITIQEARDLTSELAVMTSKLGRTVQEIHAMLAEIRESTTKIDVKFDGGTF |
| GXP7IEG01DXU2C | LBLPB2_04467340 | F002098 | MAYKSGADGITKQGKTKGKNLGDSGPSVGIQKGKGSKGSGGGKRNIDMKTMGRGLAKVAAQKRG |
| GXP7IEG01ETSX6 | LBLPB2_01026630 | F053130 | KDDRGKYEVMESPAQIVEELQRIGKEMEKGANALYDAEVKLADAEAAYDKAVSLSFLNSSGTVADRQAVAKLQAVDEKLKADLARAEFNRVKTKMKLLSDTATMTAVISRNVELQWRS |
| LBLPB2_contig00014 | LBLPB2_00222610 | F069853 | MDVMITESIQNWLDTLELNLEQKVLSGLCLRLAQSFDQQANTSTAAELRKTVLELQRSLGASNVDADPLEKLLTR |
| LBLPB2_contig00015 | LBLPB2_00275320 | F029288 | MSVVYAKIISMLGKRNEARRKAEAKALFSSMLKAPHLVEQPKKYKGSRQSNKARAIKESE |
| LBLPB2_contig00035 | LBLPB2_01330990 | F030940 | MWLDIARRTLAVIILKVTGIFVGGAAIGLEVTQAIAMAAFAGVIDVSQELSRSYLADGKLDPEEINKSFGKLAAQKDEKKK |
| LBLPB2_contig00040 | LBLPB2_01596550 | F074591 | MHNWNWTPRAKMIGTVLQAIAFIGITYILFVGTWYALGGN |
| LBLPB2_contig00048 | LBLPB2_02016620 | F057778 | VDEQAEEIKADLRDYYNSPERYTFQDFEDIFQDRDPFEFL |
| LBLPB2_contig00061 | LBLPB2_02703410 | F030940 | MWLDIARRTLAVIILKVTGIFVGGAVIGLEVIQAVAMAAFAGVIDVAQELSRAYLADGKIDPDELNKSFGKIADKSGPSSKP |
| LBLPB2_contig00070 | LBLPB2_03178790 | F005529 | VLVGSLPNYGINATNKKIEMPKKVPPVKTDYSLEIRFKESSGEWSKWLNKGKGAFQSIEIVQSQIRILASEHQGKEKEVRFEWNGWLCDLAGLPTGEVIALK |
| LBLPB2_contig00114 | LBLPB2_00087340 | F042328 | MDSKPKVRLGNGKKRSASWLTATICMTEAKNHVYTYNGKEYFNINININDQPNEFGKDVNITLNDYKKEGNDSPQVNKSESDLPF |
| LBLPB2_contig00155 | LBLPB2_00303300 | F029443 | MTLVDLVKKLKAIQEAHPMLRTFGEGDIYDYVDNGGEIQYPVLWTLVRPSVYNGTTFRYDLVLLFADLLTEDKSNRLQIQSDQLLVALDVLAKLKLDNDYTFNTAPNAAVEFFQERFDDFTAGVSIAIQITAPMPLNFCQIPTES |
| LBLPB2_contig00155 | LBLPB2_00303310 | F091646 | MNLLQKDEIGVPSTLVAVLANVFQAIGIDFLNVVLTMMISLLSIVWLVYKIKNEKAIFDSRKDEERK |
| LBLPB2_contig00200 | LBLPB2_00548100 | F053130 | MEIITPGHIVEELQRLTREMDKGANALYDSECKLADAEAAYDRAVSLAFINNSGTVADRQAVAKLQSVDEKLKADLARAEYNRVKTKMRALSDQATMMAVISKNVELQWRNA |
| LBLPB2_contig00206 | LBLPB2_00576460 | F034898 | MSESVKTLTKEQIVRELQHRSTQKYLTYLALQEIMLDNYEDCTFLKDYDYYITTKHKNIVTDLKRNATKAFRFLEGYDEGQKTIRQFHHFVKIFEGLHESIDLGGSTFHECLQAIEAILERNAQAES |
| LBLPB2_contig00311 | LBLPB2_01130290 | F004345 | MIEQLIVAATGIGYAIVGVLQWYKGEASNGMIWCGYAFAQIGLYLNLK |
| LBLPB2_contig00326 | LBLPB2_01206380 | F053903 | MAIIKVKGAITRVFYEGKGIEVTESYETKIGDTINKRYTVWLKQPTTLEAGDTVQVEGLYSSEIDNWTNKEGEAKQSIKVSINNPLVVPAEPLNIVKGIFEPTHSEPSPF |
| LBLPB2_contig00379 | LBLPB2_01482130 | F053903 | MAIIKVKGSITRVFYEGKGIEVTESYETKTGDTINKRYTVWLKQPTTLDIGDTVQVEGLYSSEIDNWTNKEGEAKQSIKVSINNPQVVPVEPVAIIKGIFEPTHSEPSPF |
| LBLPB2_contig00382 | LBLPB2_01501440 | F049637 | MNILKSDELGVPSTFMAIFANVTAMAGLQFVNVVFTSVISILSIVYLGYKIKHEIKRNKENGKG |
| LBLPB2_contig00382 | LBLPB2_01501450 | F029443 | MTLSNLIEKLKTIQEEHPMIRTFGEGDIYDYTDNGGEIVYPVFWAVVRPSQYSNMTMRYRLVLLFADLLTEDKSNRLQVQSDQLLVALDVLAKLKLDNDYNFNTQPQASVEFFQERFDDFTAGVSIDIEITSPMPLNLCQVPTT |
| LBLPB2_contig00419 | LBLPB2_01696340 | F030940 | IARRTLAVIILKVTGIFVGGAVIGLEVIQAVAMAAFAGIIDVAQELSRAYLADGKIDPDELNKSFGKIADKSGPSSK |
| LBLPB2_contig00451 | LBLPB2_01868060 | F065775 | SPKKVVSITLDEEEGIFQLAYLFKKLLDDAGIANKLEEKEVEAVEATEEPSN |
| LBLPB2_contig00640 | LBLPB2_02864940 | F055533 | MATQNEIKNAILKAAGNPTVGVIADIADDLAKAVWELDNTNSYNPAKEARVVDIKETR |
| LBLPB2_contig00682 | LBLPB2_03083010 | F036704 | MWIEIDVMLNGSTMDWEALGLEVKHEFSKRMVRVKDIAYVQELVHDIQVIFFYDQSSCLIRGTYAEIRDELIHLDQEDDFE |
| LBLPB2_contig00813 | LBLPB2_03775650 | F030017 | MQKVKQLYLEGLTRKKIAKRLGIDDQKVGYLLYTKMKLHEIYPRKLMEENIFQLLTDHQVSRILTLATYGYNIREIVEDQQIEYRKVKKLLDVANYRNMIEKKFRFFFIY |
| LBLPB2_contig01587 | LBLPB2_02579780 | F057131 | MRNKDLFEQKLERFEAEVKKMGYHIHRNELDVAFNKVAELLEKIGDLRTLLNTESQD |
| LBLPB2_contig01640 | LBLPB2_02864970 | F061852 | GAPVVKKDAHADAIGAILKMTESEIESLTKANKTALEKIFSALANSKPI |
| LBLPB2_contig01795 | LBLPB2_03676390 | F030442 | AAATMNSGAYPMDRQSDDNSYAGVIGPKISSKTVAVGTIEVSSALRRTEIEDIKANTGMDIVQKMESILVNELSQTISKQIVAKIFEMGTLNAATAPASPVVGVGTIFDLDTAYATSSLGGETTHAVQRKLITKIAHASNYIATEGRVGPAQYLITNGGLAAALQDIA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |