| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2043231003 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0045617 | Gp0051646 | Ga0010906 |
| Sample Name | Sediment 1 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Soedertoern University |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 39942571 |
| Sequencing Scaffolds | 2 |
| Novel Protein Genes | 2 |
| Associated Families | 2 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 2 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Microbial Communities From The Landsort Deep, Baltic Sea |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Landsort Deep, Baltic Sea |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine water body → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Sweden | |||||||
| Coordinates | Lat. (o) | 58.58333333 | Long. (o) | 18.23333333 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009954 | Metagenome / Metatranscriptome | 310 | Y |
| F079994 | Metagenome | 115 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| sed1_GCH9ZVC02FNKC6 | Not Available | 503 | Open in IMG/M |
| sed1_GCH9ZVC02HJUWV | Not Available | 521 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| sed1_GCH9ZVC02FNKC6 | sed1_868770 | F079994 | MEHLQQRLDALKQQEANLLMQLDEVRVLVSAYENTLKENDKGVG |
| sed1_GCH9ZVC02HJUWV | sed1_1227470 | F009954 | MDGLKVKVKTSDGQEGTYSLRPKTLVAFENKYNKGFAKLLTEEQRLEHIYFLAWAAMKDSGKVVKPFGDGFLDTLDSVELETDPNSESTETA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |