| Basic Information | |
|---|---|
| Taxon OID | 3300034151 Open in IMG/M |
| Scaffold ID | Ga0364935_0104498 Open in IMG/M |
| Source Dataset Name | Sediment microbial communities from East River floodplain, Colorado, United States - 2_s17 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 873 |
| Total Scaffold Genes | 2 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment → Sediment Microbial Communities From Colorado River Basin Floodplains, Colorado, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Colorado | |||||||
| Coordinates | Lat. (o) | 38.9229 | Long. (o) | -106.9499 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006511 | Metagenome / Metatranscriptome | 371 | Y |
| F082909 | Metagenome / Metatranscriptome | 113 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0364935_0104498_558_791 | F082909 | GAGG | MPRCPLCRSALVTITFGLYPTAICTSCSARWIQDGHQQRAINQVQEPSLMGQGPSLMAQGSLLASSPTSTLTLAHRG |
| Ga0364935_0104498_99_530 | F006511 | GGAGG | MVLHDRPARLRSNSDQPTAITDVLVATSGSSSRTGDIPLGTPTCSARTRQGRWALYPNGDQVVVVWPGGALAGPPAEVARELDRLGDGHDDLDRAAVWAIRQFLTDPAAQDSAVWSSTRARTWSTPAIGYWLSLDPPFADFVE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |