NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335029_0000773

Scaffold Ga0335029_0000773


Overview

Basic Information
Taxon OID3300034102 Open in IMG/M
Scaffold IDGa0335029_0000773 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25526
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (40.54%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058094Metagenome / Metatranscriptome135Y
F105022Metagenome100N
F105025Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0335029_0000773_15832_16098F058094N/AMSQVFFNPFSGAAQNIALPQLDSAGQISGSMIPDDFDDVQAFPTLEDFPNPGTVARIYFPADTNIPHRWDPDTLSYKPISSDTDGGEF
Ga0335029_0000773_20078_20269F105025N/AMDTHQAAASFTGLVATATGLTVSLLPEIEAWLRIASLLIGCAVGLASFAVIVRNWTKNHHPHE
Ga0335029_0000773_9393_9677F105022N/AMFNLKKPTTRYILPDRLDDDDMTTALCMPGTKPLVVQAVLQVLRDHIDDSVELVGSIKLATEHGQLAHCAGALDALRGLESDLLQRIDEASKKM
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