| Basic Information | |
|---|---|
| Taxon OID | 3300034101 Open in IMG/M |
| Scaffold ID | Ga0335027_0007256 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9700 |
| Total Scaffold Genes | 22 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (9.09%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (14.29%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000710 | Metagenome / Metatranscriptome | 925 | Y |
| F002287 | Metagenome / Metatranscriptome | 574 | Y |
| F003659 | Metagenome / Metatranscriptome | 474 | Y |
| F004838 | Metagenome / Metatranscriptome | 421 | Y |
| F011474 | Metagenome / Metatranscriptome | 290 | N |
| F026828 | Metagenome | 196 | Y |
| F042709 | Metagenome / Metatranscriptome | 157 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335027_0007256_1488_1895 | F000710 | N/A | MANSVNMISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGIIFSSSTSAAPAVLVNALQLRVSLTINNDVVIDDVVAHELGASVASGITTGFPAFIPFPRALTGQDTILLRVTNSSGASQLLNATVYYKNEI |
| Ga0335027_0007256_1898_2485 | F002287 | N/A | MSQVSKLSYVDGKLGAPTSGQQTTRVLFNTIEAPGTTSSLTFFRSFQGLSNGQTNLTQNRLDSMESMVIKTIWLAEYTTAGLLQTFGANAQQTLSIIVGNQTVVKNLPIQFNQGVNGQAYDRLHENAGALNQVIAESATIQAVQPCEIRLLTDIVIPPQVAFEVRIESNNVAYGTGAVVCALAGYGKIFSAGNSF |
| Ga0335027_0007256_2488_3093 | F004838 | N/A | MITAQDKILHVASKLGLTSLKDMQASTGAVYDVDTELSGTIFSQATRHANPGVTNINENQFEVNEALLVETIAFYVKDEAGDVLNFQNIYGSNAVIMFDLVIGNKRVMKETPVFAAGSPYTFANVANVTKAAGENQLQSFNPRHQIFMEGAGILIPPQVQWYVSYTIFNVVSGAIIAPTTNTAIGCYLFGTKVLLNFNTSI |
| Ga0335027_0007256_3627_4124 | F042709 | GAGG | MNPFLIAGAVALFFLLRKKPPVVDNTTPAVVPFTSANVNAYKNENTKSLFDRRLASSARRVTPDGTGKAIVDGSYKCFAPGNQTRRNAIIKVYEDLDRLQTRINNSTGERRQDARRDKIEKDNERAILVAEHYMICEAFFEELKKKSQTPTQTTVTTAQQERGTL |
| Ga0335027_0007256_6745_6858 | F026828 | N/A | MTEELIANAIAFLAGWVLKRPDFVQKILSKLFAKKDK |
| Ga0335027_0007256_7962_8336 | F003659 | N/A | MPQTAADAIGRYLIAREDVPVYDLPNGTRIGTINKGNSTAEVYSYVQRPGQVWFMFDYTIPGQTPGAYYVLAKDGRFSLSSAPGNVIVSPSSLPGVDVFPKGSQIKTFALYGIIGVLALLLLKK |
| Ga0335027_0007256_9305_9598 | F011474 | N/A | LNNPQTAFIMKEKIDHLTHFDIVVKEELASCGSADEMLDVLAKNYDLRKPLGGLTKAAFTIGLRTAVGMLRPEVKADANYKTKELKDTRFPHLKIFS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |