NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310127_002618

Scaffold Ga0310127_002618


Overview

Basic Information
Taxon OID3300034072 Open in IMG/M
Scaffold IDGa0310127_002618 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18270
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (47.06%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007030Metagenome / Metatranscriptome359Y
F012771Metagenome / Metatranscriptome277Y
F102858Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0310127_002618_17685_17843F012771GGAGGVSTKAKRPAEKVFIVSADTHRRLKEYATKKDYKLQFVADEAVSEYLKRKETK
Ga0310127_002618_3311_3553F102858GGAMKLTDEQLSEALSVSEEHPVLKALGQLIDDTLRDEVLNALLPSLSAEDRAYNAGRAAAIKDLIAQISALRNERELTSGQF
Ga0310127_002618_8119_8937F007030AGGAMTTTKAESPQMEDPFIYAPQPTSKVQAVTQAGTRPSIHVSLYAYGGISAACMMSWVDLTATFARSDRQTDLRTIREDALISRSRCRATKWFLDSGKDVWIQLDHDIEFTAADVIRMAELAHEHQATVCIPYSCRSLPARPALRPKVEHLQALKHQVNDAECAAELVPVTMFASGCLAIPRKCLLATLDALEGSGVQNPYRIDWCEDVRVERFPTLWMPLAMESMSGKLEYLSEDYAAAVRMTLAGVKHLSMKPRKQLNHWGEFPFSFAPYAG
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