| Basic Information | |
|---|---|
| Taxon OID | 3300034013 Open in IMG/M |
| Scaffold ID | Ga0334991_0002365 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 15429 |
| Total Scaffold Genes | 32 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (28.12%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (14.29%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000922 | Metagenome | 833 | Y |
| F001964 | Metagenome | 610 | Y |
| F002227 | Metagenome | 580 | Y |
| F005388 | Metagenome / Metatranscriptome | 402 | N |
| F038648 | Metagenome / Metatranscriptome | 165 | N |
| F071018 | Metagenome | 122 | N |
| F082227 | Metagenome / Metatranscriptome | 113 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334991_0002365_10178_10438 | F001964 | GGAGG | MSRNLFAKPVYKVQLSGAIGWSDMKEKVVSYRTVEFSSRKDAERAARELNPGEYTQGRIRVVPVELSEDYDIYPVVERISEKPKSI |
| Ga0334991_0002365_10808_11401 | F071018 | N/A | MKVSLGDVDNIETKSEFKVRMSYLENGSTHRSLFRLMPPLHHDADPNRSQVLAYIGENLACDIGRSIRAFNSMRHPKSKVVVFDQVHRMWKGCDWLPSDENSKDAMILVEHRALERRVIAMDGELRKALKEIKRLNKQMADLYSDAKTMGESGGDENQKTLVEEFNEIFGKKSEKPSKTKHQPPVNTIESMVAAAWK |
| Ga0334991_0002365_2246_2530 | F038648 | N/A | MPSFTIPKGVEIPENLAEGEAFQTMATIVLGKNGKAEVIEIDGVAIPGYEKKSKGKKLAERGEEEEMEVEESTTPGGGGFIAEVMQRGAGPMAR |
| Ga0334991_0002365_3414_4661 | F005388 | N/A | MACPNVFNAFAVATESLAQDVYKRASYRSMWLNMIERGEYPQGTGLTQTSYNTTSIEPTAAEEWSAITLASGNPGDNGGACDVTYSEVPVGFNSVTWSPERFALKGPLLCKDDLTYDHRVEAFLRVYLEKLSIRAQRSWETRYQNTFAKFAIKAVADSSFTQVETIPSGVNEFPWIQTGSAGQALNQSTSELTQEMLDVAAATLIRNGATNPDSSGFISYSSDGPVFPLYIGLEASQRIAQNNPAFRDDLRFADQGSGAGAELLKRIGANRVIKNYRHVPNLFPPRFTYAGGKYTLVQPFTSASGTKGTVFSVNSSWTTAPYEAAFIVTPYVFKSHIVRPVNRVGDLAWMPTNYMGEWQWVTGAYKFNTDCEDPLEKKGQHYAEFVHASEPIFTNQGMTIIFRRCTGSLTQIICS |
| Ga0334991_0002365_3_167 | F082227 | N/A | MIVPVNIVAVQCNQNNSLFVTTGIDYDNSGSIVGSEITSQYTLVPGDDLTGQPVE |
| Ga0334991_0002365_5576_6049 | F000922 | N/A | LDTWHALWDKVSVNKEKWEQAKSLYLAGMEWKAIANDLQLSQATLQTRASREGITKLKAQMQTICTEKKTQSLESLSAIVRSKLAEDAAATIERVNGYELDGIKDESTREQILGSVAKRSALVFGWSEGNESTSVSINLLGSMPDKLFHVEQSVNPV |
| Ga0334991_0002365_9685_9918 | F002227 | N/A | MKLTIQSKQNAQTIVDLFNAILTGEEAENGATPLSIYDDNKHICSLIAKDGTQILELIIEREDGDKLCPGTPDLETL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |