NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334979_0000196

Scaffold Ga0334979_0000196


Overview

Basic Information
Taxon OID3300033996 Open in IMG/M
Scaffold IDGa0334979_0000196 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)48301
Total Scaffold Genes61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (77.05%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012854Metagenome / Metatranscriptome276Y
F034897Metagenome / Metatranscriptome173Y
F076851Metagenome117Y
F088773Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0334979_0000196_12111_12329F012854GGAGMISAIYKLYPQVKYTIDNVAYDANDNEVAYDLAAVTAQAEADVQAAKNAKISALAKLTALGLSEDEVKALIG
Ga0334979_0000196_18646_19173F076851GAGGMGFFDSLVPTEQYQAQTLAKQSGGQGTPIPMAPMQPPVPQQFAKGGLAAANNQIQQTQVMKVIANYFKNKGLPVEPAMEGVKKEIENGLKLIPFESSVMGFKSLGNDVAQIHFFTVGTMQDLANDMQYFYKYLKDKGIKTVYDSIPAPITTQIFDRLGATIVKSDKPDFKFKATI
Ga0334979_0000196_39342_39485F088773AGGAGMKKLIAVAIVALISTGVYAQTKCVPDGRGGMCCWDVQTQGPFKPIGC
Ga0334979_0000196_5989_6168F034897AGGAGMFKKGADGIEKKGKTDVKIYPNDGPKVIDNGPKSSKSSLNKNMKAMGRNLARCSNQRGR
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