NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334821_049904

Scaffold Ga0334821_049904


Overview

Basic Information
Taxon OID3300033798 Open in IMG/M
Scaffold IDGa0334821_049904 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 713 E-3-S
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)833
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3533Long. (o)19.0467Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006594Metagenome / Metatranscriptome369Y
F033738Metagenome / Metatranscriptome176Y
F104334Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0334821_049904_1_354F033738N/AYRKDDRIYVRYAIQNNGQSAYVPGTPGVFMLRSPRSSCSLYTLSQSQLIGDGIRITSEGQTPFKVLNGEVHANAVAPGGTTWGLVAFEWPPRANGPAVVRFAFAPDGAGEVSAVLVL
Ga0334821_049904_417_680F006594N/AMIPEIPQEATGIQSTSAARIVETFRARFAKACDAGLWKRLSNAVLEPANPFDIKARRRLRQEAVVLGTLVFAALGLAVYFNLNAMAR
Ga0334821_049904_687_833F104334GAGGMARNREALNRILRRGEDACLLVSTAALMLVEVGYVAWLERLPALPSPAH
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