| Basic Information | |
|---|---|
| Taxon OID | 3300033757 Open in IMG/M |
| Scaffold ID | Ga0373404_0110078 Open in IMG/M |
| Source Dataset Name | Leachate microbial community from anaerobic digester in University of Toronto, Ontario, Canada - S62W2 SP |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Beijing Genomics Institute (BGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 945 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Novel Protein Genes | 1 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Micrarchaeota → Candidatus Micrarchaeia → Candidatus Micrarchaeales → Candidatus Micrarchaeaceae → Candidatus Micrarchaeum → Candidatus Micrarchaeum acidiphilum → Candidatus Micrarchaeum acidiphilum ARMAN-2 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Digester Leachate → Metagenomes From Anaerobic Digester Of Solid Waste |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | University of Toronto, Ontario, Canada | |||||||
| Coordinates | Lat. (o) | 43.6629 | Long. (o) | -79.3957 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000388 | Metagenome / Metatranscriptome | 1201 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0373404_0110078_198_356 | F000388 | AGGAG | MKVIKVTKEYFQTEDEKVYFFEPLEKEISVEDMQKIMDANEKLVKELKDGSK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |