NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300033757

3300033757: Leachate microbial community from anaerobic digester in University of Toronto, Ontario, Canada - S62W2 SP



Overview

Basic Information
IMG/M Taxon OID3300033757 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0130338 | Gp0401315 | Ga0373404
Sample NameLeachate microbial community from anaerobic digester in University of Toronto, Ontario, Canada - S62W2 SP
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size738469035
Sequencing Scaffolds24
Novel Protein Genes25
Associated Families24

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota1
All Organisms → cellular organisms → Bacteria3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Dysgonomonadaceae → Proteiniphilum1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus flavefaciens1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → SAR324 cluster → SAR324 cluster bacterium2
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → unclassified Methanoregulaceae → Methanoregulaceae archaeon PtaU1.Bin0661
All Organisms → Viruses → Predicted Viral1
Not Available4
All Organisms → cellular organisms → Bacteria → PVC group1
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Micrarchaeota → Candidatus Micrarchaeia → Candidatus Micrarchaeales → Candidatus Micrarchaeaceae → Candidatus Micrarchaeum → Candidatus Micrarchaeum acidiphilum → Candidatus Micrarchaeum acidiphilum ARMAN-21
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA0121
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → unclassified Veillonellaceae → Veillonellaceae bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMetagenomes From Anaerobic Digester Of Solid Waste
TypeEngineered
TaxonomyEngineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Digester Leachate → Metagenomes From Anaerobic Digester Of Solid Waste

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationUniversity of Toronto, Ontario, Canada
CoordinatesLat. (o)43.6629Long. (o)-79.3957Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000388Metagenome / Metatranscriptome1201Y
F015738Metagenome / Metatranscriptome252Y
F030405Metagenome / Metatranscriptome185Y
F039153Metagenome / Metatranscriptome164Y
F045540Metagenome152Y
F050940Metagenome144Y
F051554Metagenome144Y
F053745Metagenome140Y
F058971Metagenome / Metatranscriptome134N
F063339Metagenome129Y
F066219Metagenome / Metatranscriptome127Y
F070158Metagenome / Metatranscriptome123N
F071272Metagenome / Metatranscriptome122N
F072819Metagenome121N
F078673Metagenome / Metatranscriptome116Y
F080092Metagenome / Metatranscriptome115Y
F085739Metagenome / Metatranscriptome111N
F086799Metagenome / Metatranscriptome110Y
F088079Metagenome / Metatranscriptome109N
F089856Metagenome108Y
F093744Metagenome / Metatranscriptome106Y
F098660Metagenome / Metatranscriptome103Y
F103106Metagenome101Y
F103990Metagenome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0373404_0004023All Organisms → cellular organisms → Archaea → Euryarchaeota11855Open in IMG/M
Ga0373404_0005013All Organisms → cellular organisms → Bacteria9718Open in IMG/M
Ga0373404_0007576All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Dysgonomonadaceae → Proteiniphilum6811Open in IMG/M
Ga0373404_0017289All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes3516Open in IMG/M
Ga0373404_0029097All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus flavefaciens2418Open in IMG/M
Ga0373404_0030590All Organisms → cellular organisms → Bacteria2331Open in IMG/M
Ga0373404_0038495All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → SAR324 cluster → SAR324 cluster bacterium1982Open in IMG/M
Ga0373404_0048379All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → unclassified Methanoregulaceae → Methanoregulaceae archaeon PtaU1.Bin0661692Open in IMG/M
Ga0373404_0072049All Organisms → Viruses → Predicted Viral1281Open in IMG/M
Ga0373404_0081452All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → SAR324 cluster → SAR324 cluster bacterium1172Open in IMG/M
Ga0373404_0086784Not Available1121Open in IMG/M
Ga0373404_0098220All Organisms → cellular organisms → Bacteria → PVC group1024Open in IMG/M
Ga0373404_0110078All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Micrarchaeota → Candidatus Micrarchaeia → Candidatus Micrarchaeales → Candidatus Micrarchaeaceae → Candidatus Micrarchaeum → Candidatus Micrarchaeum acidiphilum → Candidatus Micrarchaeum acidiphilum ARMAN-2945Open in IMG/M
Ga0373404_0114907Not Available916Open in IMG/M
Ga0373404_0120800All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia884Open in IMG/M
Ga0373404_0124252Not Available866Open in IMG/M
Ga0373404_0137518All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales805Open in IMG/M
Ga0373404_0153250All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus745Open in IMG/M
Ga0373404_0195729All Organisms → cellular organisms → Bacteria626Open in IMG/M
Ga0373404_0208020All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA012600Open in IMG/M
Ga0373404_0239183All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → unclassified Veillonellaceae → Veillonellaceae bacterium545Open in IMG/M
Ga0373404_0243584All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria538Open in IMG/M
Ga0373404_0247087All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon533Open in IMG/M
Ga0373404_0256105Not Available520Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0373404_0004023Ga0373404_0004023_8004_8297F015738MWSRVDRDLYPEIEKAIGEVFPGESDRVRLAAVEVWGVVMNRVPESGHIEGVSWCRHFDRPIDHHLVKEDRPACIEERNGCGNCPESTYRVHRVTDR
Ga0373404_0005013Ga0373404_0005013_5658_6050F103990MNQKLNDDINEVVRLITIEKRLGKTSIAKEDATFVRTLADKKRYPRAEYVLARMYLCGYQVEQDKALGLKYLSRSSRHASYSLQLKIAYIYHLLGDFYLITKCLKRAIDDCTWHKPPNSTLRKSHRKNDN
Ga0373404_0006414Ga0373404_0006414_5576_6040F066219MKVFLVFLILCIGCLIHANIVEFFESIPPVLRYAVGTVITVYALSWAYSWFFDPIIVVADTKYGAFNFGPFIVVEPCIWYSNDVEWRNTVLNHEYTHYVQHAVYGPILSVTYPILALYSNIKSGNQWDDNYWEIQAMQAPDTAPSWKPLAVWVW
Ga0373404_0007576Ga0373404_0007576_1_246F088079MLTEKAIWLENVPFRSIDGAIGGQNCSVYFVESMFVGQSCTFCTSILGNLAPNPYRMLTRLDVFIHICEIYKVDITFFKSNV
Ga0373404_0017289Ga0373404_0017289_355_648F086799MKAKKVIYSRLISKGNYENAKIEIELEVEENESAGYVFQCAKEWVENRIAIEKVSDYKVEQARKVMDDKRNHTLAQIEEAEEILAKSKNIQDEGLPF
Ga0373404_0029097Ga0373404_0029097_4_159F098660MDLTMAEKRELIERITELAKIDVLKKEDRDDFYRVCLVACDREMAKMRKEK
Ga0373404_0030590Ga0373404_0030590_2071_2271F063339MNATQNTVGTTDQFHQTWQVLMQQLERVLSLAHQRRPNRTETRESVSIAKHLLGKVGDQIDAAIQE
Ga0373404_0038495Ga0373404_0038495_128_496F050940MGVIPGNCYYKRFDGGLCNNNYQFYVGLNTLREGEVFASDERITCSYPGFHFASKSWCAAYYAHRPLEALIRIPLDAQINEPWATDGKASADKIEILQVWDTKTGEDVTDLYRRQDNKEASK
Ga0373404_0048379Ga0373404_0048379_395_763F085739MREIPIAGETCCANCVHDATCSHRSALPGIALICDHFVNRTFPPEVQDAIQAGACCHICAAPALIGGGGRVTCGNCLLAQAAAKAKIGDKIIKEWRGTVTTPPAPMFEAGADPDEVEEEGGV
Ga0373404_0072049Ga0373404_0072049_2_682F070158MEAQKMADATYYQEGAAGLGKPDASSEKPSTEALSPNDAAPEANGTEVVTKAELQRIKAEIEESVLRKTQSMTDKLGSKLDVRIKTAQDEAEKAIRMLKASGVALTPEQERSISQTAVNEALTVKEVSEAAQHQEAQSKPIDFVNGEVRKIMKRTGVYIEPDEANALIGEVDSPFDYVRKFEEICQSRSTRPPEESRIPTMSPSNGKATSVDSLRAQYDKEISDIVH
Ga0373404_0081452Ga0373404_0081452_30_452F071272VFDKIISGEMKITDMDDWEIITRTAFSEWLRGLETAAKTRVYKAAVDHIADTMAAGAWQDGPAPKDGSWILGLFYGLPYVVCYDSWEISEEGGPKETEEGWCLAGQDMHPMDQDEPEKWARIIHPNRHMPASWDGPGDQR
Ga0373404_0086784Ga0373404_0086784_491_1120F080092MKYIAAVFTSLLFLLLICSLPSHAVVSSTVFSNGGSIIINTDESWETSNNLMRFGTVNDSYEYGGKSQTIVSLGRTGIMKSDSTRVETLGMLNAFDSAGMFSTQTNIPESMCDQSNFIAGYGNQSSSRYPETQTVEGLWGLMGSGPGTTYESQVEVNGKVVGVSVKGTTPSGYLYEDVKGSLKSGLDKNSSLMQYSYSRHDHGVLNSDTN
Ga0373404_0098220Ga0373404_0098220_1_573F089856VLAAALLFSAGCANFGAPRNATAAIPCTYRFKMLSRPTDQERVERAIRAVAAGPVAKSGTVAYPEYRFHVARLADLDRLHPELLFDNPDALLAANRRQTLNLRAAGVDFTFDSTDVSASAAITVTFHVKPGSRLYYKHPGGVESDITAKVDKQGKVTLPTSIKEGQKFIYARAVKDNVNRYIRINIFNNDV
Ga0373404_0110078Ga0373404_0110078_198_356F000388MKVIKVTKEYFQTEDEKVYFFEPLEKEISVEDMQKIMDANEKLVKELKDGSK
Ga0373404_0114907Ga0373404_0114907_87_245F000388MKIIKVTKEYFETEDEKVFFFDPLDKSISIEDMQKIVDANEKLVKELKDGSK
Ga0373404_0120800Ga0373404_0120800_208_759F039153MKYNVITSEATKQYNTAVQFFNNSNESRNVNFTPFHKEIKQWAKHQGYSAKLYLRSAAIECINPVLPKEPECLLVDLIQVIANGRTYLIAIDILGPYENNLHYILKEHARLRKAIYVEAESLDDVICEIQENECNRNGLPCVPDIKFRTSFLGDYSSLFAPENLIWKTTRHEPSKHRRNEASK
Ga0373404_0124252Ga0373404_0124252_562_816F093744MVNNIVINVLISIGMINIGGYNMGFKIGDRVEVNYPIDDFQGHIGIVKKIITDTELIPGKTVVICYWAFLDKEIAFYESSLDLI
Ga0373404_0137518Ga0373404_0137518_648_803F103106IEGLDLIEIVVPSYKYARRKGLTDDDAEATVNWALKQAIIILEQLIGATDE
Ga0373404_0153250Ga0373404_0153250_374_745F072819MAMCHGIGACIRRRDQTGDRVSIRVGITTRRGIVNVTLIHGEDMLQDQEKADKASFKAALLENENTVNELIYFCRNNLNDLTVQCFTHKRFMGVQAFIDALRLAYQELGVEGEKGNVSDFVLFV
Ga0373404_0195729Ga0373404_0195729_2_349F045540MLKYIYTLATLLDSKSKIRKHYSPETVISDLFDEDLDEIDFIKSLSELELIYGFEIPEDLYDKTDLTLGEFADELSHIPVIPDELYPEFFDIKFTSMKLTKRYIELENKTDANSVR
Ga0373404_0208020Ga0373404_0208020_43_207F078673MKIDVGIQCIITRENGEQIVVDEVSSIAVVIEFMGQKFHIFKTMDGLVLNGGWK
Ga0373404_0239183Ga0373404_0239183_266_373F030405MQGYDDDLFILALAKTVTPGGSPRREPGQAAPLTT
Ga0373404_0243584Ga0373404_0243584_269_526F058971MSLDIEPITMMWNGQAISLPGTYELVPDNEIKHLHKRVVAVALHERRRVPLYGRVVGKARYGKHSVWLIEDDNGNLVKAQKPMEI
Ga0373404_0247087Ga0373404_0247087_57_533F051554MTFQLKYYVPFKAAEGVNADLALKEGILPIEGTAIDTSVNANKWQVPAEDLDFFTASLKGAQLRIDHAESVLSIVGKVPEAIRSGNQVFFQAEVGDPSIIPKILRGYVNHVSVQVDSDDTQCSVCGKQTRIEGILTHLCAGAWEIVHKPHVRELSIVAS
Ga0373404_0256105Ga0373404_0256105_217_519F053745MATQVKVTHDPEGSLIKKPSYLIELENKWKRWTGIEDKEAFEALKDLSGDLWSELRKLEALLCKETENRQFPDDFKEFQKARIRDAWRDIIGHQKIGLDKL
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